CX294374

Overview
NameCX294374
Unique NameCX294374
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length568
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14223 contig Ccv1_Contig14223:18..586. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294374 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 9.537e-35
Identity = 87/168 (51.79%), Postives = 110/168 (65.48%), Query Frame = 2
Query:  107 SVVAARVTGIR-KSGVYQFSSVK--YLPGTLQRNVSLSVRCMAKNEQQKDQ-----------STQPP-----KLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWMG 553
            S+++  +T I  +S V QF+++   Y+P TL+RNVSL VR MA+ E ++             ST  P     + P++STKFSD+ AFSGPAPERINGRLAMIGFVAA+ VE++KGQ +  QLS GGVAWFLGT          P F+GVSVESKS   M+SDAE W G
Sbjct:    8 SIMSNSMTNISSRSRVNQFTNIPSVYIP-TLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNG 174          
BLAST of CX294374 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.603e-24
Identity = 61/135 (45.19%), Postives = 86/135 (63.70%), Query Frame = 2
Query:  188 LQRNVSLSVRCMAKN------EQQKDQSTQP------PKLPRISTKFS-DVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWMG 553
            ++RN   +VR M ++      +QQK Q T        P    ++TK + D+F+F G APERINGR AMIGFVAA+ VEL+ G+DVF+Q+ +GGV WFL T          P+++G+S E+K++GF  SDAE+W G
Sbjct:   41 MRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNG 175          
BLAST of CX294374 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.259e-22
Identity = 57/134 (42.54%), Postives = 74/134 (55.22%), Query Frame = 2
Query:  158 FSSVKYLP-GTLQRNVSLSVRCMAKNEQQKDQSTQPPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG-GVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWMG 553
            F+    LP G+ +   +L  R +    Q +  +  PP  P+ ST   D  AFSGPAPERINGRLAM+GFV ALAVE  +G  + +QL  G G AWF  T          PL +G S E ++   M ++AELW G
Sbjct:   10 FAGAAVLPRGSARSLPALGRRTLVVRAQTEGPNAPPPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNG 143          
BLAST of CX294374 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.209e-21
Identity = 64/163 (39.26%), Postives = 84/163 (51.53%), Query Frame = 2
Query:   68 MAASLATQSMLGSSVVAARVTGIRKSGVYQFSSVKYLPGTLQRNVSLSVRCMAKNEQQKDQSTQPPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG-GVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWMG 553
            MA  ++  S  G++VV        +S    F + + LP       +L  R +    Q +  S  PP  P+ ST   D  AFSGPAPERINGRLAM+GFV ALAVE  +G  + +QL  G G AWF  T          PL +G S E ++   M ++AELW G
Sbjct:    1 MATMMSMSSFAGAAVVP-------RSSASSFGA-RSLP-------ALGRRALVVRAQTEGPSAPPPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNG 148          
BLAST of CX294374 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.132e-19
Identity = 54/107 (50.47%), Postives = 66/107 (61.68%), Query Frame = 2
Query:  254 TQPPKLPRISTKFS-----DVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLS--DGGVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWMG 553
            T  P  P+  TK +     D  AFSGPAPERINGRLAM+GFVAAL+VE ++G  +  Q+     G+AWFL T          PL +G SVESKS G  ++DAELW G
Sbjct:  101 TTIPAAPKPVTKKANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNG 207          
The following BLAST results are available for this feature:
BLAST of CX294374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ELI_PEA9.537e-3551.79Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL2.603e-2445.19Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI6_HORVU9.259e-2242.54Low molecular mass early light-inducible protein H... [more]
ELI9_HORVU1.209e-2139.26Low molecular mass early light-inducible protein H... [more]
ELI5_HORVU1.132e-1950.47High molecular mass early light-inducible protein ... [more]
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Properties
Property NameValue
Genbank descriptionC05015H10SK FlavSen1 Citrus clementina cDNA clone C05015H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294374 ID=CX294374; Name=CX294374; organism=Citrus clementina; type=EST; length=568bp
GTAAGGAGCCCATTAACCTAAAAACTCCCAGTTGCTAAATTATTCCTCCG
TTGCATAATCTACAAAAATGGCTGCTTCACTCGCCACTCAATCTATGCTT
GGAAGCTCTGTCGTCGCAGCTCGTGTTACCGGCATCAGGAAATCTGGGGT
GTACCAATTTTCCTCTGTTAAGTACTTACCTGGTACTCTGCAGAGAAATG
TTAGCTTATCAGTGCGCTGCATGGCTAAGAATGAGCAGCAGAAGGATCAA
TCAACTCAGCCACCAAAGCTACCGCGTATAAGCACGAAGTTCTCTGACGT
GTTTGCGTTCAGCGGGCCGGCACCGGAGAGGATAAACGGGAGGCTTGCGA
TGATTGGGTTCGTGGCTGCATTGGCGGTGGAGCTATCCAAGGGTCAGGAT
GTGTTTGCCCAGTTATCAGACGGTGGAGTTGCCTGGTTCTTGGGGACCAG
TGTTCTGCTTTCGGTTGCGTCCCTGGTTCCTTTGTTTAAAGGTGTCAGCG
TGGAGTCTAAATCGGATGGGTTCATGACTTCGGATGCTGAGTTGTGGATG
GGAGGTTCGCTATGATGG
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