CX294547

Overview
NameCX294547
Unique NameCX294547
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length599
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4226 contig Ccv1_Contig4226:588..1186. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: PEX7_DICDI (Peroxisomal targeting signal 2 receptor OS=Dictyostelium discoideum GN=pex7 PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 4.568e-54
Identity = 93/182 (51.10%), Postives = 128/182 (70.33%), Query Frame = 2
Query:    2 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE-DALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQG 544
            +K+W      S++TF+EH YC+Y+A W+PR++ +F S SGD TL+IWD R+  S   I AH+ EIL CDWNKY+D  + + SVDK+I+IWD+R    P  +L GH YAVR++K SPH  ++LASCSYDM+V +WD   E D ++ R DHHTEF VG+D ++ ++G +AS  WDE V VW  G
Sbjct:  129 IKIWNPRMDRSLKTFREHRYCIYSAIWSPRNAHLFASVSGDRTLKIWDSRDNRSLNTIKAHDHEILTCDWNKYNDKEVVTGSVDKTIRIWDIRYPDRPTTILRGHTYAVRRIKCSPHSESMLASCSYDMSVIVWDRAREQDPIIARMDHHTEFVVGLDWNMFIDGQMASCSWDEQVCVWNLG 310          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: PEX7_HUMAN (Peroxisomal targeting signal 2 receptor OS=Homo sapiens GN=PEX7 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.128e-44
Identity = 83/178 (46.63%), Postives = 116/178 (65.17%), Query Frame = 2
Query:    2 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 535
            VKLW      S+ TF+ H   +Y+  W+P     F SASGD TLRIWDV+  G  ++IPAH+ EIL+CDW KY++ L+ + +VD S++ WD+RN R P+  L GH YA+R+VKFSP   ++LASCSYD TV  W+F   D+L+   +HHTEF  G+D S+     +A   WDE + ++
Sbjct:  137 VKLWDPTVGKSLCTFRGHESIIYSTIWSPHIPGCFASASGDQTLRIWDVKAAGVRIVIPAHQAEILSCDWCKYNENLLVTGAVDCSLRGWDLRNVRQPVFELLGHTYAIRRVKFSPFHASVLASCSYDFTVRFWNFSKPDSLLETVEHHTEFTCGLDFSLQSPTQVADCSWDETIKIY 314          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: PEX7_MOUSE (Peroxisomal targeting signal 2 receptor OS=Mus musculus GN=Pex7 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.473e-44
Identity = 82/178 (46.07%), Postives = 116/178 (65.17%), Query Frame = 2
Query:    2 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 535
            VK+W      S+ TF+ H   +Y+  W+P     F SASGD TLRIWDV+  G  ++IPAH+ EIL+CDW KY++ L+ + +VD S++ WD+RN R P+  L GH YA+R+VKFSP   ++LASCSYD TV  W+F   D L+   +HHTEF  G+D+S+     +A   WDE + ++
Sbjct:  132 VKVWDPTVGNSLCTFRGHESVIYSTIWSPHIPGCFASASGDQTLRIWDVKTTGVRIVIPAHQTEILSCDWCKYNENLVVTGAVDCSLRGWDLRNVRQPVFELLGHTYAIRRVKFSPFHASVLASCSYDFTVRFWNFSKPDPLLETVEHHTEFTCGLDLSLQSPTQVADCSWDETIKIY 309          

HSP 2 Score: 68.1662 bits (165), Expect = 3.662e-11
Identity = 47/179 (26.26%), Postives = 81/179 (45.25%), Query Frame = 2
Query:   65 VYNATWNPRHSDVFCSASGDCTLRIWD-VREMGSTMIIPAHEFEILACDWNK-YDDCLIASASVDKSIKIWD--VRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDPRAV*YLLGRDFS 589
            +++ TW+  +  V  + SGD +L++WD  +  G   +   H  E+ + DW++   + L+ S S D+++K+WD  V N    +    GH   +    +SPH     AS S D T+ +WD       +    H TE  +  D     E L+ +   D  +  W      + V  LLG  ++
Sbjct:   65 LFDVTWSENNEHVLVTCSGDGSLQLWDTAKATGPLQVYKEHTQEVYSVDWSQTRGEQLVVSGSWDQTVKVWDPTVGN---SLCTFRGHESVIYSTIWSPHIPGCFASASGDQTLRIWDVKTTGVRIVIPAHQTEI-LSCDWCKYNENLVVTGAVDCSLRGWDLRNVRQPVFELLGHTYA 239          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: PEX7_CRIGR (Peroxisomal targeting signal 2 receptor OS=Cricetulus griseus GN=PEX7 PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.924e-44
Identity = 82/178 (46.07%), Postives = 116/178 (65.17%), Query Frame = 2
Query:    2 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 535
            VK+W      S+ TF+ H   +Y+  W+P     F SASGD TLRIWDV+  G  ++IPAH+ EIL+CDW KY++ L+ + +VD S++ WD+RN R P+  L GH YA+R+VKFSP   ++LASCSYD TV  W+F   D L+   +HHTEF  G+D+S+     +A   WDE + ++
Sbjct:  132 VKVWDPTVGNSLCTFRGHESVIYSTIWSPHIPGCFASASGDQTLRIWDVKTAGVRIVIPAHQTEILSCDWCKYNENLVVTGAVDCSLRGWDLRNVRQPVFELLGHTYAIRRVKFSPFHASVLASCSYDFTVRFWNFSKPDPLLETVEHHTEFTCGLDLSLQSPTEVADCSWDETIKIY 309          

HSP 2 Score: 67.3958 bits (163), Expect = 6.246e-11
Identity = 47/179 (26.26%), Postives = 81/179 (45.25%), Query Frame = 2
Query:   65 VYNATWNPRHSDVFCSASGDCTLRIWD-VREMGSTMIIPAHEFEILACDWNK-YDDCLIASASVDKSIKIWD--VRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDPRAV*YLLGRDFS 589
            +++ TW+  +  V  + SGD +L++WD  +  G   +   H  E+ + DW++   + L+ S S D+++K+WD  V N    +    GH   +    +SPH     AS S D T+ +WD       +    H TE  +  D     E L+ +   D  +  W      + V  LLG  ++
Sbjct:   65 LFDVTWSEDNEHVLVTCSGDGSLQLWDTAKATGPLQVYKEHTQEVYSVDWSQTRGEQLVVSGSWDQTVKVWDPTVGN---SLCTFRGHESVIYSTIWSPHIPGCFASASGDQTLRIWDVKTAGVRIVIPAHQTEI-LSCDWCKYNENLVVTGAVDCSLRGWDLRNVRQPVFELLGHTYA 239          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: PEX7_PICPA (Peroxisomal targeting signal 2 receptor OS=Pichia pastoris GN=PEX7 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.772e-24
Identity = 71/185 (38.38%), Postives = 98/185 (52.97%), Query Frame = 2
Query:   62 CVYNATWNPRHSDVFCSASGDCTLRIWDVREMGST-MIIPAHE-FEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV-----PIAVLN---GHGYAVRKVKFSPHRRNLLASCSYDMTVCLW-DFMVEDALVGRYD---------------HHTEFAVGVDMSVLVE-GLLASTGWDELVYVW 535
            CVY+A ++    ++  S + D  L++WD R      M   AH   E L+CD+N+Y   ++ASA VDK  K+WD R  +      P   LN   GH +A+RK+ +SPH    L +CSYDMTV +W D     + VG  D                HTEF +G D S+  E G + +TGWDE+VYVW
Sbjct:  186 CVYDAKFSFHDPNIIMSCNSDSHLQLWDTRLPNPLFMDFVAHNGLEALSCDFNRYRPFVVASAGVDKLAKVWDTRMIQPNVHSRPPRALNKFMGHEFAIRKLAWSPHGPTQLLTCSYDMTVRVWNDSPSPTSRVGLLDGASQPHAPPCSKIFSAHTEFVMGCDWSLWGEPGWVVTTGWDEMVYVW 370          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: PEX7_YEAST (Peroxisomal targeting signal 2 receptor OS=Saccharomyces cerevisiae GN=PEX7 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.937e-20
Identity = 60/196 (30.61%), Postives = 90/196 (45.92%), Query Frame = 2
Query:   62 CVYNATWNPRHSDVFCSASGDCTLRIWDVR---EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVR-------------------NYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL---------------VGRYDHHTEFAVGVDMSVLVE-GLLASTGWDELVYVW 535
            CVY A ++P   ++  S SG+    ++D+R          +     E L CD+NKY   ++A+  VD +I+IWD+R                   N      + N HG A+RKV +SPH  N+L S SYDMT  +W  +  D                 +  +  H+EF  G D S+  + G +AST WD  ++VW
Sbjct:  176 CVYQAQFSPHDQNLVLSCSGNSYASLFDIRLPSGKNQNNFLVHSGLEALTCDFNKYRPYVVATGGVDNAIRIWDIRMLNKNESATIKRTVPGQLHNSSCINEIPNAHGLAIRKVTWSPHHSNILMSASYDMTCRIWRDLSNDGAKETYKTNSTDATKGSIFNFTQHSEFVFGADWSLWGKPGYVASTAWDGNLFVW 371          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: PEX7_SCHPO (Peroxisomal targeting signal 2 receptor OS=Schizosaccharomyces pombe GN=pex7 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.368e-18
Identity = 55/180 (30.56%), Postives = 93/180 (51.67%), Query Frame = 2
Query:    2 VKLWTVDRPTSVRTFKEHAYC-VYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEG-LLASTGWDELVYVW 535
            +KLW  + P SV+T    +   +     +    ++    S D   + WD R     M I     +I   +W+K +  ++ +A  +  +  +D+ N + P++VL+GH  AVR +K S    +LLA+ SYDMT  ++D   + + + + D H+EF   VD S   +G  +AS GWDE +Y+W
Sbjct:  128 IKLWLGNLPNSVQTLNNGSNSRILTVATHYSSPNLLGYTSSDGLCKFWDFRSSDKFMSIEIPN-QITCMNWSKSNHRMVYTADNNNLVYCYDIANLKTPLSVLSGHQLAVRSIKSSNSAHDLLATASYDMTSRIFD-PEQHSCIRKVDLHSEFVRDVDWSDFGDGSWIASVGWDESLYIW 305          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: HAT2_SCHPO (Histone acetyltransferase type B subunit 2 OS=Schizosaccharomyces pombe GN=mis16 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.005e-17
Identity = 47/127 (37.01%), Postives = 71/127 (55.91%), Query Frame = 2
Query:   35 VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR---EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 406
            +  +  H   V +  ++P+H  +  S S DCTL+I D R   E  +  +I AH   I A   N ++D L+A+AS DK++ +WD+RN    +  L GH   V  +++SPH   +LAS S D  VC+WD
Sbjct:  228 IAKYHRHTDIVNDVQFHPQHEALLASVSDDCTLQIHDTRLNPEEEAPKVIQAHSKAINAVAINPFNDYLLATASADKTVALWDLRNPYQRLHTLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIWD 354          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: HAT2_USTMA (Histone acetyltransferase type B subunit 2 OS=Ustilago maydis GN=HAT2 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.466e-17
Identity = 56/181 (30.94%), Postives = 84/181 (46.41%), Query Frame = 2
Query:   41 TFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGST--MIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFM----------VEDA---LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 538
            T+  H   V +  W+  H  +F S   D  L IWD+RE  S     + AH  E+ A  ++  ++ ++ + S DKS+ +WD+RN +V +  L  H   +  V +SPH   +LAS S D  V LWD             ED    L+  +  HT     +  S  +E  L S   D +V VW+
Sbjct:  286 TYTGHTAIVEDVAWHNHHESLFGSVGDDRQLLIWDIREPASAPKYRVEAHTGEVNALAFSPENENILVTGSSDKSVGVWDLRNLKVKLHSLESHTDEILSVCWSPHHATVLASASADRRVNLWDLSKIGQEQTPDDAEDGPPELIFVHGGHTSRPTDLAWSPHMEWALTSAAEDNIVMVWR 466          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: LIN53_CAEEL (Probable histone-binding protein lin-53 OS=Caenorhabditis elegans GN=lin-53 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 7.617e-17
Identity = 53/178 (29.78%), Postives = 81/178 (45.51%), Query Frame = 2
Query:   44 FKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF-------MVEDA------LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 538
            FK H   V +  W+  H  VF S   D  L IWDVR       I AH  E+    +N Y + ++A+ S DK++ +WD+RN R+ +     H   + +V++SPH   +LAS   D  + +WD          EDA      L+  +  HT        +     ++ S   D ++ VWQ
Sbjct:  218 FKGHESVVEDVAWHVLHDGVFGSVGDDKKLLIWDVRTSTPGHCIDAHSAEVNCLAFNPYSEFILATGSADKTVALWDLRNLRMKLHSFESHRDEIFQVQWSPHNETILASSGTDKRLHVWDLSKIGEDQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVVCSVSEDNILQVWQ 395          

HSP 2 Score: 80.8777 bits (198), Expect = 5.459e-15
Identity = 51/170 (30.00%), Postives = 78/170 (45.88%), Query Frame = 2
Query:   47 KEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR-------EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 535
            K H    Y  +WNP    +  SAS D T+  WD+        E+ +  +   HE  +    W+   D +  S   DK + IWDVR    P   ++ H   V  + F+P+   +LA+ S D TV LWD       +  ++ H +    V  S   E +LAS+G D+ ++VW
Sbjct:  169 KGHTKEGYGLSWNPNKEGLILSASDDQTVCHWDINANQNVAGELQAKDVFKGHESVVEDVAWHVLHDGVFGSVGDDKKLLIWDVRT-STPGHCIDAHSAEVNCLAFNPYSEFILATGSADKTVALWDLRNLRMKLHSFESHRDEIFQVQWSPHNETILASSGTDKRLHVW 337          
The following BLAST results are available for this feature:
BLAST of CX294547 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
PEX7_DICDI4.568e-5451.10Peroxisomal targeting signal 2 receptor OS=Dictyos... [more]
PEX7_HUMAN1.128e-4446.63Peroxisomal targeting signal 2 receptor OS=Homo sa... [more]
PEX7_MOUSE1.473e-4446.07Peroxisomal targeting signal 2 receptor OS=Mus mus... [more]
PEX7_CRIGR1.924e-4446.07Peroxisomal targeting signal 2 receptor OS=Cricetu... [more]
PEX7_PICPA3.772e-2438.38Peroxisomal targeting signal 2 receptor OS=Pichia ... [more]
PEX7_YEAST1.937e-2030.61Peroxisomal targeting signal 2 receptor OS=Sacchar... [more]
PEX7_SCHPO2.368e-1830.56Peroxisomal targeting signal 2 receptor OS=Schizos... [more]
HAT2_SCHPO2.005e-1737.01Histone acetyltransferase type B subunit 2 OS=Schi... [more]
HAT2_USTMA4.466e-1730.94Histone acetyltransferase type B subunit 2 OS=Usti... [more]
LIN53_CAEEL7.617e-1729.78Probable histone-binding protein lin-53 OS=Caenorh... [more]

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Properties
Property NameValue
Genbank descriptionC05054A08SK FlavRip1 Citrus clementina cDNA clone C05054A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294547 ID=CX294547; Name=CX294547; organism=Citrus clementina; type=EST; length=599bp
GGTTAAACTCTGGACCGTTGACCGGCCTACCAGTGTGCGAACATTTAAAG
AACACGCGTATTGCGTGTACAACGCCACGTGGAACCCGCGTCACAGCGAC
GTGTTCTGTTCCGCGAGTGGGGACTGCACTCTTCGAATTTGGGATGTGAG
AGAGATGGGCAGCACGATGATAATTCCGGCCCACGAGTTTGAAATTTTAG
CTTGTGATTGGAACAAGTACGATGACTGTTTAATTGCGAGTGCTTCAGTT
GATAAGAGTATTAAAATTTGGGATGTGAGGAACTATAGAGTTCCAATTGC
TGTATTAAATGGACATGGCTATGCCGTGAGGAAAGTGAAATTTTCACCGC
ACAGGAGGAATTTGTTAGCGTCTTGTTCGTATGACATGACTGTGTGCTTA
TGGGATTTCATGGTGGAGGATGCTTTGGTTGGGAGGTATGATCATCACAC
TGAGTTTGCCGTTGGGGTTGATATGAGTGTACTTGTTGAGGGATTGTTGG
CCAGTACTGGATGGGATGAGCTTGTCTATGTGTGGCAGCAAGGAATGGAT
CCCAGAGCGGTTTGATACTTGTTAGGAAGGGATTTTTCTTTTCTTCTTT
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