CX294548

Overview
NameCX294548
Unique NameCX294548
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length523
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig561 contig Ccv1_Contig561:1..523. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CX294548 vs. ExPASy Swiss-Prot
Match: ATP9_ARATH (ATP synthase subunit 9, mitochondrial OS=Arabidopsis thaliana GN=ATP9 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 4.277e-17
Identity = 47/68 (69.12%), Postives = 49/68 (72.06%), Query Frame = 3
Query:   75 MKKRDENSQPEMLEGAKLMXXXXXXXXXXXXXXXXXNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 278
            M KR+ NSQPEMLEGAKL+                 NVFSSLIHSVARNPSLAKQLFGYAILGFALTE
Sbjct:    1 MTKREYNSQPEMLEGAKLIGAGAATIALAGAAIGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 68          
BLAST of CX294548 vs. ExPASy Swiss-Prot
Match: ATP9_TOBAC (ATP synthase subunit 9, mitochondrial OS=Nicotiana tabacum GN=ATP9 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.347e-13
Identity = 40/57 (70.18%), Postives = 40/57 (70.18%), Query Frame = 3
Query:  108 MLEGAKLMXXXXXXXXXXXXXXXXXNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 278
            MLEGAKLM                 NVFSSLIHSVARNPSLAKQLFGYAILGFALTE
Sbjct:    1 MLEGAKLMGAGAATIALAGAAIGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 57          
BLAST of CX294548 vs. ExPASy Swiss-Prot
Match: ATP9_SOLTU (ATP synthase subunit 9, mitochondrial OS=Solanum tuberosum GN=ATP9 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.347e-13
Identity = 40/57 (70.18%), Postives = 40/57 (70.18%), Query Frame = 3
Query:  108 MLEGAKLMXXXXXXXXXXXXXXXXXNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 278
            MLEGAKLM                 NVFSSLIHSVARNPSLAKQLFGYAILGFALTE
Sbjct:    1 MLEGAKLMGAGAATIALAGAAIGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 57          
BLAST of CX294548 vs. ExPASy Swiss-Prot
Match: ATP9_SOLLC (ATP synthase subunit 9, mitochondrial OS=Solanum lycopersicum GN=ATP9 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.347e-13
Identity = 40/57 (70.18%), Postives = 40/57 (70.18%), Query Frame = 3
Query:  108 MLEGAKLMXXXXXXXXXXXXXXXXXNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 278
            MLEGAKLM                 NVFSSLIHSVARNPSLAKQLFGYAILGFALTE
Sbjct:    1 MLEGAKLMGAGAATIALAGAAIGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 57          
BLAST of CX294548 vs. ExPASy Swiss-Prot
Match: ATP9_PETHY (ATP synthase subunit 9, mitochondrial OS=Petunia hybrida GN=ATP9 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.347e-13
Identity = 40/57 (70.18%), Postives = 40/57 (70.18%), Query Frame = 3
Query:  108 MLEGAKLMXXXXXXXXXXXXXXXXXNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 278
            MLEGAKLM                 NVFSSLIHSVARNPSLAKQLFGYAILGFALTE
Sbjct:    1 MLEGAKLMGAGAATIALAGAAIGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 57          
BLAST of CX294548 vs. ExPASy Swiss-Prot
Match: ATP9_OENBI (ATP synthase subunit 9, mitochondrial OS=Oenothera biennis GN=ATP9 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.347e-13
Identity = 40/57 (70.18%), Postives = 40/57 (70.18%), Query Frame = 3
Query:  108 MLEGAKLMXXXXXXXXXXXXXXXXXNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 278
            MLEGAKLM                 NVFSSLIHSVARNPSLAKQLFGYAILGFALTE
Sbjct:    1 MLEGAKLMGAGAATIALAGAAIGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 57          
BLAST of CX294548 vs. ExPASy Swiss-Prot
Match: ATP9_WHEAT (ATP synthase subunit 9, mitochondrial OS=Triticum aestivum GN=ATP9 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 2.429e-12
Identity = 39/57 (68.42%), Postives = 40/57 (70.18%), Query Frame = 3
Query:  108 MLEGAKLMXXXXXXXXXXXXXXXXXNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 278
            MLEGAKL+                 NVFSSLIHSVARNPSLAKQLFGYAILGFALTE
Sbjct:    1 MLEGAKLIGAGAATIALAGAAVGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 57          
BLAST of CX294548 vs. ExPASy Swiss-Prot
Match: ATP9_ORYSJ (ATP synthase subunit 9, mitochondrial OS=Oryza sativa subsp. japonica GN=ATP9 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.429e-12
Identity = 39/57 (68.42%), Postives = 40/57 (70.18%), Query Frame = 3
Query:  108 MLEGAKLMXXXXXXXXXXXXXXXXXNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 278
            MLEGAKL+                 NVFSSLIHSVARNPSLAKQLFGYAILGFALTE
Sbjct:    1 MLEGAKLIGAGAATIALAGAAVGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 57          
BLAST of CX294548 vs. ExPASy Swiss-Prot
Match: ATP9_ORYSI (ATP synthase subunit 9, mitochondrial OS=Oryza sativa subsp. indica GN=ATP9 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.429e-12
Identity = 39/57 (68.42%), Postives = 40/57 (70.18%), Query Frame = 3
Query:  108 MLEGAKLMXXXXXXXXXXXXXXXXXNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 278
            MLEGAKL+                 NVFSSLIHSVARNPSLAKQLFGYAILGFALTE
Sbjct:    1 MLEGAKLIGAGAATIALAGAAVGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 57          
BLAST of CX294548 vs. ExPASy Swiss-Prot
Match: ATP9_MAIZE (ATP synthase subunit 9, mitochondrial OS=Zea mays GN=ATP9 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.429e-12
Identity = 39/57 (68.42%), Postives = 40/57 (70.18%), Query Frame = 3
Query:  108 MLEGAKLMXXXXXXXXXXXXXXXXXNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 278
            MLEGAKL+                 NVFSSLIHSVARNPSLAKQLFGYAILGFALTE
Sbjct:    1 MLEGAKLIGAGAATIALAGAAVGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 57          
The following BLAST results are available for this feature:
BLAST of CX294548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
ATP9_ARATH4.277e-1769.12ATP synthase subunit 9, mitochondrial OS=Arabidops... [more]
ATP9_TOBAC8.347e-1370.18ATP synthase subunit 9, mitochondrial OS=Nicotiana... [more]
ATP9_SOLTU8.347e-1370.18ATP synthase subunit 9, mitochondrial OS=Solanum t... [more]
ATP9_SOLLC8.347e-1370.18ATP synthase subunit 9, mitochondrial OS=Solanum l... [more]
ATP9_PETHY8.347e-1370.18ATP synthase subunit 9, mitochondrial OS=Petunia h... [more]
ATP9_OENBI8.347e-1370.18ATP synthase subunit 9, mitochondrial OS=Oenothera... [more]
ATP9_WHEAT2.429e-1268.42ATP synthase subunit 9, mitochondrial OS=Triticum ... [more]
ATP9_ORYSJ2.429e-1268.42ATP synthase subunit 9, mitochondrial OS=Oryza sat... [more]
ATP9_ORYSI2.429e-1268.42ATP synthase subunit 9, mitochondrial OS=Oryza sat... [more]
ATP9_MAIZE2.429e-1268.42ATP synthase subunit 9, mitochondrial OS=Zea mays ... [more]

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Properties
Property NameValue
Genbank descriptionC05054A09SK FlavRip1 Citrus clementina cDNA clone C05054A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294548 ID=CX294548; Name=CX294548; organism=Citrus clementina; type=EST; length=523bp
AAACCAAGTACGATGCCCAAGAGAAAAGGAACGAGGGGAAGAATCGACGA
GAAATCCATAACAAAAAATCGTGAATGAAAAAGCGTGACGAGAATTCTCA
ACCCGAGATGTTAGAAGGTGCAAAATTAATGGGTGCCGGAGCTGCTACAA
TTGCTTTAGCGGGAGCTGCTGTCGGTATTGGAAACGTGTTCAGTTCTTTG
ATCCATTCCGTGGCACGAAATCCATCATTGGCTAAACAATTATTTGGTTA
TGCCATTTTGGGCTTTGCTCTAACCGAAGCTATTGCATTGTTTGCCCTAA
TGATGGCCTTTTTGATCTTATTCGTCTTCTGATCTAAGAAAGAAAAGAAG
GTTTCAGTCTCATAAAGCAAGACCTCTTTCACATAAGAAAGTGGAGGCGG
GCTTGGGTACGATCTAAAACGATTCCACATGAAAGAGGACTTCCCTCTTG
AGTAATGGGAAGCGGGCTAGTCCCCGAAAATGCTCGTTCCGAAGTCGTTG
GGGCTTAAAAAAAAAAAAAAAAA
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