CX294549

Overview
NameCX294549
Unique NameCX294549
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX294549 vs. ExPASy Swiss-Prot
Match: CML50_ARATH (Probable calcium-binding protein CML50 OS=Arabidopsis thaliana GN=CML50 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.793e-23
Identity = 59/127 (46.46%), Postives = 77/127 (60.63%), Query Frame = 3 
Query:    9 FFLTSSCYLDTGPKEFIQVFHSLQNWRVXXXXXXXFLRMHIQDQNRFQYEFFVW*FAILELLQAMFEKVDRDRSGKIDTNELREALMSLGLAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIEYVLMI 389
            +  T+S  +  GPKEF  +F+SLQNWR                                    ++FE+ D+DRSG+ID NELR+AL+SLG +VSPVVLDLLV+KFDK+GGK++AIEYDNFIE  L +
Sbjct:  229 YLFTNSNAMKIGPKEFTALFYSLQNWR------------------------------------SIFERSDKDRSGRIDVNELRDALLSLGFSVSPVVLDLLVSKFDKSGGKNRAIEYDNFIECCLTV 319
[Close]
BLAST of CX294549 vs. ExPASy Swiss-Prot
Match: CML49_ARATH (Probable calcium-binding protein CML49 OS=Arabidopsis thaliana GN=CML49 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.793e-23
Identity = 59/127 (46.46%), Postives = 76/127 (59.84%), Query Frame = 3 
Query:    9 FFLTSSCYLDTGPKEFIQVFHSLQNWRVXXXXXXXFLRMHIQDQNRFQYEFFVW*FAILELLQAMFEKVDRDRSGKIDTNELREALMSLGLAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIEYVLMI 389
            +  T+S     GPKEF  +F SLQNWR                                    ++FE+ D+DRSG+IDTNELR+ALMSLG +VSPV+LDLLV+KFDK+GG+++AIEYDNFIE  L +
Sbjct:  210 YLFTNSNVRKIGPKEFTSLFFSLQNWR------------------------------------SIFERFDKDRSGRIDTNELRDALMSLGFSVSPVILDLLVSKFDKSGGRNRAIEYDNFIECCLTV 300
The following BLAST results are available for this feature:
BLAST of CX294549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CML50_ARATH1.793e-2346.46Probable calcium-binding protein CML50 OS=Arabidop... [more]
CML49_ARATH1.793e-2346.46Probable calcium-binding protein CML49 OS=Arabidop... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05054A10SK FlavRip1 Citrus clementina cDNA clone C05054A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294549 ID=CX294549; Name=CX294549; organism=Citrus clementina; type=EST; length=674bp
GGCGTAAGTTCTTTTTGACTTCTTCTTGCTATTTGGATACAGGGCCTAAG
GAGTTCATCCAAGTGTTTCACAGTCTTCAAAACTGGAGGGTAATTATAAT
TCTGATTTTATAATTTCTTAGGATGCATATACAAGACCAAAACCGTTTTC
AATATGAGTTTTTTGTTTGGTAATTTGCAATTTTGGAATTGCTACAGGCC
ATGTTTGAGAAAGTGGACAGGGACAGGAGTGGAAAGATTGATACGAATGA
GTTGCGGGAGGCTCTTATGAGTCTAGGTCTTGCGGTTTCACCCGTGGTAT
TGGACTTGCTTGTCACTAAGTTTGACAAAACTGGTGGCAAAAGCAAGGCC
ATTGAATATGATAACTTCATCGAGTATGTTCTCATGATAGTACCTCTTGC
GACCTTTTAATCCAATAAATGATTATCTTTGAGTATATTTCTAATCACGT
TTCTATTTTGCCTTTTTCAAATGCAGGTGCTGTCTCACGGTTAAGGTGAG
CTTGAGCTTCTATATATGTTTAACCATCATTTTACTATCATTAAATAAGC
GATCGTTTAATGGGACGATAAAATATGATCATCTTCAAACATTTGCTTAC
ACTGATAACGGATTTGTTAATCAATTATATTGCAGGGGTTGACGGAGAAA
TTTAAGGAGAGGGATACTACGTAC
back to top