CX294554

Overview
NameCX294554
Unique NameCX294554
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6568 contig Ccv1_Contig6568:860..1552. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294554 vs. ExPASy Swiss-Prot
Match: PSMD4_ARATH (26S proteasome non-ATPase regulatory subunit 4 OS=Arabidopsis thaliana GN=MBP1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.955e-18
Identity = 48/96 (50.00%), Postives = 70/96 (72.92%), Query Frame = 2
Query:   95 PMDEEKSLLERAFAMSMGTSVSDTSMADADTSKATDEDKELALALQMSMQDDTKDPSNQSDMSKVLEDQSFVSSILTSLPGVDPNDPSVKDLIASL 382
            PMDE+ +LL++A AMS+G         D + S+A DED++LALALQMSM  +    +  +  + +L +Q+F+SS+L+SLPGVDPNDP+VK+L+ASL
Sbjct:  279 PMDEDSALLDQAIAMSVG---------DVNMSEAADEDQDLALALQMSMSGEESSEATGAG-NNLLGNQAFISSVLSSLPGVDPNDPAVKELLASL 364          
The following BLAST results are available for this feature:
BLAST of CX294554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PSMD4_ARATH6.955e-1850.0026S proteasome non-ATPase regulatory subunit 4 OS=... [more]
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Properties
Property NameValue
Genbank descriptionC05054B06SK FlavRip1 Citrus clementina cDNA clone C05054B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294554 ID=CX294554; Name=CX294554; organism=Citrus clementina; type=EST; length=692bp
GAAAGAGGAGGAGCCATCATCCAACTCACAGGATGCAACGATGACTGACA
ATACTAACAATACAGCAGCAGAAACAACTGAGAAAACTGCTGATCCAATG
GATGAAGAGAAATCTTTGCTAGAGAGGGCTTTTGCAATGTCCATGGGTAC
TTCTGTATCTGATACTTCCATGGCTGATGCTGATACGTCAAAAGCGACTG
ATGAGGATAAGGAGTTGGCCTTGGCTCTCCAAATGTCCATGCAGGATGAT
ACAAAAGATCCATCAAACCAATCAGATATGAGCAAGGTGCTAGAGGATCA
GTCATTTGTGTCATCCATCCTTACATCACTTCCAGGAGTTGACCCAAATG
ATCCATCGGTGAAAGATCTGATTGCATCTCTTCAAGGTCAACCTGAGTCA
TCTGAACAGAAGAAGAAAGAAGATGAACCCCCAAAGGATGATAAGTGAAG
TTGGCATTAGTGATACTGCTGAATCTTCAAGCCAAGGCTTTAACTTCAGA
ATCCAGCTCTTCCTGCTACTTAGTTGCTTTGTATCCAGGAAACTCTCATG
TTTCTCTTGAGTGGTCAAAACAAGAAGAGATGTAAAAGGAGCCTTGGGAG
GTTCCAGTTGAACCTTGATGAAAATATCGTTGCTTTCTGTTCTAAGTACA
GTTGCAGGTCTCGAAGGTTGAATTCATGACTATATCGCGTAT
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