CX294556

Overview
NameCX294556
Unique NameCX294556
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length362
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10225 contig Ccv1_Contig10225:648..1009. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294556 vs. ExPASy Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.320e-15
Identity = 36/53 (67.92%), Postives = 46/53 (86.79%), Query Frame = 1
Query:    1 VVVPTAAYCSEKYNQTVVSAADKGYKVSSYLPLVPTERIAKVFSNGVVESQPL 159
            V VPTAA+CSEKYN TVV AA+KGY+V+SY+PLVPTERI+K+F+    E++PL
Sbjct:  188 VAVPTAAFCSEKYNDTVVKAAEKGYRVTSYMPLVPTERISKIFAEEKAETEPL 240          
BLAST of CX294556 vs. ExPASy Swiss-Prot
Match: SRP_PHAVU (Stress-related protein OS=Phaseolus vulgaris GN=SRP PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.752e-13
Identity = 32/43 (74.42%), Postives = 41/43 (95.35%), Query Frame = 1
Query:    4 VVPTAAYCSEKYNQTVVSAADKGYKVSSYLPLVPTERIAKVFS 132
            V+P AAYC+EKYN+ +VS+A+KGY+VS+YLPLVPTE+IAKVFS
Sbjct:  123 VLPKAAYCTEKYNEVIVSSAEKGYRVSAYLPLVPTEKIAKVFS 165          
BLAST of CX294556 vs. ExPASy Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.973e-12
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 1
Query:    1 VVVPTAAYCSEKYNQTVVSAADKGYKVSSYLPLVPTERIAKVFSNG 138
            VVVPTAAY SEKYNQ+V   A++GY V+ YLPL+PTERIAKVF +G
Sbjct:  186 VVVPTAAYWSEKYNQSVSYTAERGYTVALYLPLIPTERIAKVFQDG 231          
The following BLAST results are available for this feature:
BLAST of CX294556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y3550_ARATH1.320e-1567.92REF/SRPP-like protein At3g05500 OS=Arabidopsis tha... [more]
SRP_PHAVU2.752e-1374.42Stress-related protein OS=Phaseolus vulgaris GN=SR... [more]
SRP_VITRI3.973e-1271.74Stress-related protein OS=Vitis riparia GN=SRP PE=... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05054B09SK FlavRip1 Citrus clementina cDNA clone C05054B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294556 ID=CX294556; Name=CX294556; organism=Citrus clementina; type=EST; length=362bp
GTTGTTGTGCCAACTGCTGCCTATTGTTCCGAAAAATACAACCAAACAGT
GGTGAGCGCTGCAGATAAGGGGTACAAGGTCTCCTCATATTTGCCTTTGG
TCCCTACTGAGAGGATTGCTAAGGTGTTCAGCAACGGGGTTGTTGAATCG
CAGCCTCTGGCTTCTGCTGGACATGAAGCTGATGTTGTTGTGCATTGATA
GCTGTGTTTTCTGTTTTCTGTTTTCTGGCCTCACAATTTTTCTTGCAAGC
TGTGGAGTGAAAATGTTTCCCTTTCTGGATGTGTATTGGGTTGAAAATGG
AGTGGATTACGATTATTTAATTTTTAAAGACATTGCTTAAAAAAAAAAAA
AAAAAAAACTCG
back to top