CX294567

Overview
NameCX294567
Unique NameCX294567
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294567_ssr255 microsatellite CX294567_ssr255:255..274. BLAST: Citrus ESTs to Prunus persica proteins V1
CX294567_ssr275 microsatellite CX294567_ssr275:275..286. BLAST: Citrus ESTs to Prunus persica proteins V1
CX294567_ssr226 microsatellite CX294567_ssr226:226..237. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig562 contig Ccv1_Contig562:1..508. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294567 vs. ExPASy Swiss-Prot
Match: GDL79_ARATH (GDSL esterase/lipase At5g33370 OS=Arabidopsis thaliana GN=At5g33370 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.599e-29
Identity = 54/74 (72.97%), Postives = 64/74 (86.49%), Query Frame = 3
Query:    3 TSKVACCGQGPYNGLGLCTPASNLCPNRAVYAFWDPFHPSERANGFIVQEFMTGSTEYMYPMNLSTIMALDSRT 224
            TSKVACCGQGPYNG+GLCTP SNLCPNR ++AFWDPFHPSE+A+  I Q+ + GS EYM+PMNLSTI+ +DS T
Sbjct:  293 TSKVACCGQGPYNGIGLCTPLSNLCPNRDLFAFWDPFHPSEKASRIIAQQILNGSPEYMHPMNLSTILTVDSMT 366          
BLAST of CX294567 vs. ExPASy Swiss-Prot
Match: LTL1_ARATH (GDSL esterase/lipase LTL1 OS=Arabidopsis thaliana GN=LTL1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 5.789e-29
Identity = 54/72 (75.00%), Postives = 63/72 (87.50%), Query Frame = 3
Query:    3 TSKVACCGQGPYNGLGLCTPASNLCPNRAVYAFWDPFHPSERANGFIVQEFMTGSTEYMYPMNLSTIMALDS 218
            TSKVACCGQGPYNG+GLCTP SNLCPNR +YAFWD FHP+E+AN  IV + +TGS++YM+PMNLST M LDS
Sbjct:  292 TSKVACCGQGPYNGIGLCTPVSNLCPNRDLYAFWDAFHPTEKANRIIVNQILTGSSKYMHPMNLSTAMLLDS 363          
BLAST of CX294567 vs. ExPASy Swiss-Prot
Match: GDL67_ARATH (GDSL esterase/lipase At4g28780 OS=Arabidopsis thaliana GN=At4g28780 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.426e-27
Identity = 55/73 (75.34%), Postives = 60/73 (82.19%), Query Frame = 3
Query:    3 TSKVACCGQGPYNGLGLCTPASNLCPNRAVYAFWDPFHPSERANGFIVQEFMTGSTEYMYPMNLSTIMALDSR 221
            TSKVACCGQG YNG G+CTP S LC +R  YAFWDPFHP+E+A   IVQ+ MTGS EYM PMNLSTIMALDSR
Sbjct:  294 TSKVACCGQGAYNGQGVCTPLSTLCSDRNAYAFWDPFHPTEKATRLIVQQIMTGSVEYMNPMNLSTIMALDSR 366          
BLAST of CX294567 vs. ExPASy Swiss-Prot
Match: GDL77_ARATH (GDSL esterase/lipase At5g18430 OS=Arabidopsis thaliana GN=At5g18430 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.335e-25
Identity = 49/70 (70.00%), Postives = 59/70 (84.29%), Query Frame = 3
Query:    3 TSKVACCGQGPYNGLGLCTPASNLCPNRAVYAFWDPFHPSERANGFIVQEFMTGSTEYMYPMNLSTIMAL 212
            TSKVACCGQGPYNG+GLCT  SNLCPNR +Y FWD FHP+E+AN  IV+  +TG+T+YM PMNLS+ +AL
Sbjct:  293 TSKVACCGQGPYNGMGLCTVLSNLCPNRELYVFWDAFHPTEKANRMIVRHILTGTTKYMNPMNLSSALAL 362          
BLAST of CX294567 vs. ExPASy Swiss-Prot
Match: GDL38_ARATH (GDSL esterase/lipase At2g23540 OS=Arabidopsis thaliana GN=At2g23540 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.191e-11
Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 3
Query:   15 ACCGQG-PYNGLGLCTPASNLCPNRAVYAFWDPFHPSERANGFIVQEFMTGSTEYMYPMNLSTI 203
            ACCG G  Y G+  C P S+LC  R  Y FWDP+HPSE AN  I ++ + G  + + P+NLS +
Sbjct:  321 ACCGNGGQYAGIIPCGPTSSLCEERDKYVFWDPYHPSEAANVIIAKQLLYGDVKVISPVNLSKL 384          
The following BLAST results are available for this feature:
BLAST of CX294567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GDL79_ARATH2.599e-2972.97GDSL esterase/lipase At5g33370 OS=Arabidopsis thal... [more]
LTL1_ARATH5.789e-2975.00GDSL esterase/lipase LTL1 OS=Arabidopsis thaliana ... [more]
GDL67_ARATH1.426e-2775.34GDSL esterase/lipase At4g28780 OS=Arabidopsis thal... [more]
GDL77_ARATH1.335e-2570.00GDSL esterase/lipase At5g18430 OS=Arabidopsis thal... [more]
GDL38_ARATH3.191e-1146.88GDSL esterase/lipase At2g23540 OS=Arabidopsis thal... [more]
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Properties
Property NameValue
Genbank descriptionC05054D03SK FlavRip1 Citrus clementina cDNA clone C05054D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294567 ID=CX294567; Name=CX294567; organism=Citrus clementina; type=EST; length=502bp
CAACATCAAAGGTAGCATGTTGCGGGCAAGGACCATACAATGGCCTAGGA
TTGTGCACTCCGGCATCCAACTTATGCCCAAATAGAGCTGTGTATGCATT
TTGGGATCCATTTCATCCATCTGAAAGAGCAAATGGATTTATTGTTCAAG
AATTCATGACTGGTTCGACTGAGTACATGTATCCCATGAATCTCAGCACC
ATCATGGCCTTGGATTCAAGGACATAATCAATCAATCACCTTTGTTACAT
ATACATATATATATATATATATATACACACACACACAGAGCTAATATATA
TCGGCCTATTTCAAGGCAATTAGGGCCATTAATGCTCCGTGTGTCTGTTT
TGAGAATAATATGTATCTTCAAACCCGTACTACTGTTTGTTGCCTTTTGT
GATTTTTCGTTGCTGTAGTAACTTATGATATTGGCCAATTGTATGCGTAA
TATTCAATGAAATCTTATTTCTGTTTCCTTCTAAAAAAAAAAAAAAAAAA
AA
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