CX294569

Overview
NameCX294569
Unique NameCX294569
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13388 contig Ccv1_Contig13388:330..1020. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294569 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.435e-23
Identity = 78/217 (35.94%), Postives = 106/217 (48.85%), Query Frame = 3
Query:   60 TTMNLFPVSDNSGQDVSARNMAAPRNWESMNLFPQQAGFAPKNDTPNMIDSSLNK-------PPPQTAQMTIFYGGQVIVFNDFPADKANEIMQLASNGSSLSHG--TAYLPMQLPAQGYNSFAASLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPNFGNNLIPERAQPPSRPCDLPIARRNSLHRFLEKRKDRICCRAPYQVNGSAGAPDKPAD 683
            T MNLFP  + SG D SA       + +   +FP+Q+ F+  + +    D  + K       P  Q+A +TIFYGG+V+VF+DF A+KA E++ LA+ GS+ S    TA +     A      A+S                                       P +  P S  C+LPIARR SLHRFLEKRKDRI  +APYQ++GSA A  KP +
Sbjct:   56 TMMNLFPC-EASGMDSSA----GQEDIKPKTMFPRQSSFSSSSSSGTKEDVQMIKETTKSVKPESQSAPLTIFYGGRVMVFDDFSAEKAKEVIDLANKGSAKSFTCFTAEVNNNHSAYSQKEIASSPNPVCSPAKTAAQE-------------------------PIQPNPASLACELPIARRASLHRFLEKRKDRITSKAPYQIDGSAEASSKPTN 242          
BLAST of CX294569 vs. ExPASy Swiss-Prot
Match: TI10A_ARATH (Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.664e-21
Identity = 82/232 (35.34%), Postives = 105/232 (45.26%), Query Frame = 3
Query:   18 EANGVPEIPRRPAATTMNLFPVS----DNSGQDVSARNMAAPRNWESMNLFPQQAGFA------PKNDTPNMIDSSLN-KPPPQTAQMTIFYGGQVIVFNDFPADKANEIMQLASNGSSLSHGTAYLPMQLPAQGYNSFAASLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPNFGNNLIPERAQPPSRP-CDLPIARRNSLHRFLEKRKDRICCRAPYQVNGSAGAPDKP 677
            + NG     R+P  TTM+LFP      D+  QDV           +  NLFP+Q  F+      PK D   M  ++ + KP  QTA +TIFY GQVIVFNDF A+KA E++ LAS G++                 NS A +                              +P+       E  Q    P  +LPIARR SLHRFLEKRKDR+  +APYQ+   A A   P
Sbjct:   52 DVNGTLGNSRQPT-TTMSLFPCEASNMDSMVQDV-----------KPTNLFPRQPSFSSSSSSLPKEDVLKMTQTTRSVKPESQTAPLTIFYAGQVIVFNDFSAEKAKEVINLASKGTA-----------------NSLAKN----------------QTDIRSNIATIANQVPHPRKTTTQEPIQSSPTPLTELPIARRASLHRFLEKRKDRVTSKAPYQLCDPAKASSNP 238          
The following BLAST results are available for this feature:
BLAST of CX294569 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TI10B_ARATH1.435e-2335.94Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
TI10A_ARATH6.664e-2135.34Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10... [more]
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Properties
Property NameValue
Genbank descriptionC05054D09SK FlavRip1 Citrus clementina cDNA clone C05054D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294569 ID=CX294569; Name=CX294569; organism=Citrus clementina; type=EST; length=691bp
GGATATCAAGCAACATTGAAGCTAATGGGGTACCCGAGATCCCGCGGCGG
CCAGCAGCTACAACTATGAATTTGTTTCCAGTAAGTGACAACTCTGGACA
AGATGTTTCAGCTCGAAACATGGCAGCTCCTCGAAACTGGGAATCAATGA
ATTTGTTCCCTCAACAAGCTGGTTTTGCTCCTAAGAATGATACCCCTAAC
ATGATAGATTCAAGTTTAAACAAGCCCCCTCCGCAAACTGCTCAAATGAC
TATATTTTATGGCGGACAAGTGATTGTGTTCAATGATTTTCCTGCTGATA
AAGCAAATGAAATCATGCAATTAGCAAGCAACGGGAGCTCACTGAGCCAT
GGTACCGCTTATCTTCCTATGCAACTGCCGGCCCAGGGTTACAACTCTTT
TGCTGCTAGTTTACCCAAAAGTCCAGTTGAATCAACTCCCCCGGTTTCTC
CTGGCCCCCCGGTTTCTCCTAGTTGCTCGGTTCCTCCTCGATCAAATAGC
ATTCCTAACTTTGGCAACAATCTAATTCCAGAGCGCGCTCAACCTCCCTC
GAGACCTTGTGATCTACCAATTGCAAGGAGAAATTCACTCCACAGGTTCT
TGGAGAAGAGAAAAGACAGGATTTGTTGCAGAGCACCGTACCAAGTGAAT
GGCTCAGCAGGGGCTCCAGACAAGCCTGCTGATAGTAAGTC
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