CX294580

Overview
NameCX294580
Unique NameCX294580
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length621
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294580 vs. ExPASy Swiss-Prot
Match: WRN_HUMAN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.868e-13
Identity = 40/114 (35.09%), Postives = 69/114 (60.53%), Query Frame = 3
Query:   75 VVGFDIEWKPTFRKGVLPRKAAVMQICRDSNHCYVMQIIHSGI-PPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKACEDLSYLAKHKIGGDSQKWGLASLTEMLVCKEV 413
            VVGFD+EW P + +G L  K A++Q+C   + CY+  +    + P  L++LLE+  + K GVGI  D  K+ RD+++ +K   +L+ +A  K+   ++ W L SL + L+ K++
Sbjct:   78 VVGFDMEWPPLYNRGKLG-KVALIQLCVSESKCYLFHVSSMSVFPQGLKMLLENKAVKKAGVGIEGDQWKLLRDFDIKLKNFVELTDVANKKL-KCTETWSLNSLVKHLLGKQL 189          
BLAST of CX294580 vs. ExPASy Swiss-Prot
Match: WRN_XENLA (Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis GN=wrn PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.440e-13
Identity = 43/109 (39.45%), Postives = 61/109 (55.96%), Query Frame = 3
Query:   75 VVGFDIEWKPTFRKGVLPRKAAVMQICRDSNHCYVMQIIH-SGIPPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKACEDLSYLAKHKIGGDSQKWGLASLTEML 398
            V+GFDIEW P + KG    K A++Q+C     CY+  I   +G P  L+ LLED ++ KVGVGI  D  K+  DY + +K   +LS +A  K+    +KW    L + L
Sbjct:   72 VLGFDIEWPPVYTKGKTG-KVALIQVCVSEKKCYLFHISPMAGFPKGLKRLLEDESVRKVGVGIEGDQWKLMSDYELKLKGFIELSEMANQKL-RCKEKWTFNGLIKHL 178          
BLAST of CX294580 vs. ExPASy Swiss-Prot
Match: WRN_MOUSE (Werner syndrome ATP-dependent helicase homolog OS=Mus musculus GN=Wrn PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.440e-13
Identity = 41/114 (35.96%), Postives = 69/114 (60.53%), Query Frame = 3
Query:   75 VVGFDIEWKPTFRKGVLPRKAAVMQICRDSNHCYVMQIIHSGI-PPSLQLLLEDSTILKVGVGIGSDAGKVYRDYNVSVKACEDLSYLAKHKIGGDSQKWGLASLTEMLVCKEV 413
            VVGFD+EW P ++ G   R  AV+Q+C   N CY+  I    + P  L++LLE+ +I K GVGI  D  K+ RD++V +++  +L+ +A  K+   ++ W L  L + ++ K++
Sbjct:   72 VVGFDMEWPPIYKPGKRSR-VAVIQLCVSENKCYLFHISSMSVFPQGLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKL-KCAETWSLNGLVKHVLGKQL 183          
The following BLAST results are available for this feature:
BLAST of CX294580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
WRN_HUMAN1.868e-1335.09Werner syndrome ATP-dependent helicase OS=Homo sap... [more]
WRN_XENLA2.440e-1339.45Werner syndrome ATP-dependent helicase homolog OS=... [more]
WRN_MOUSE2.440e-1335.96Werner syndrome ATP-dependent helicase homolog OS=... [more]
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Properties
Property NameValue
Genbank descriptionC05054F05SK FlavRip1 Citrus clementina cDNA clone C05054F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294580 ID=CX294580; Name=CX294580; organism=Citrus clementina; type=EST; length=621bp
GGCACGAGGTAGAGATGGCCGCAATAGAGCTTCGACGGATTCTTGAAGCT
AATAAAAGTGAAGCAGGTCAGGTCGTTGTTGGATTTGACATTGAGTGGAA
GCCCACTTTCAGAAAAGGTGTTTTACCAAGAAAAGCTGCAGTTATGCAGA
TATGCAGAGACAGCAACCATTGTTATGTCATGCAAATTATTCATTCAGGA
ATCCCTCCGAGCCTGCAACTGCTGCTTGAAGATTCCACAATTTTAAAAGT
TGGAGTTGGGATAGGCAGTGATGCTGGTAAAGTTTACAGAGACTATAATG
TATCTGTCAAAGCTTGTGAGGATCTTTCCTATCTAGCAAAACATAAGATT
GGCGGAGATAGTCAAAAATGGGGTCTTGCATCACTGACCGAGATGCTTGT
TTGCAAGGAGGTATCTATCCTAGTCTGCTGGATAAAACTTTATGGAAATT
CCCAGAAGGGCAGTCCTGAATCTGTAAAATGATGCCTTTCTGCAACTGCA
TTATCTTGTGCATTTCTCTAAATATAGACGAATTGTTATTTTGCTATCTC
ACGTTCCTAGCTCCTAACTGCATATAGTTTCCTTTGTTTTGGCAATCTAG
ATCAGTTTTTGAACTCCTTTT
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