CX294586

Overview
NameCX294586
Unique NameCX294586
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length651
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294586_ssr338 microsatellite CX294586_ssr338:338..349. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig565 contig Ccv1_Contig565:1..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294586 vs. ExPASy Swiss-Prot
Match: GLR36_ARATH (Glutamate receptor 3.6 OS=Arabidopsis thaliana GN=GLR3.6 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.515e-48
Identity = 99/179 (55.31%), Postives = 124/179 (69.27%), Query Frame = 2
Query:    2 YEKALTDGPKNGGVSAVIDERAYMEVFLSTRCEFSIIGQEFTRIGWGFAFPRDSPLAVDMSIAILELSENGDLQRIHDKWLTRSACSSQGAKQEADRLHLKSFWXXXXXXXXXXXXXXXIYLIQIVRQFARHYLDLQELESAGPSSQSSRLQTFISFAGEKEVVIK-NLSKKRKLERAS 535
            Y+KAL DGP  GGV+AV+DERAY+E+FLS RCEF I+GQEFT+ GWGFAFPR+SPLAVD+S AIL+LSENGD+QRI DKWL R ACS QGA+ E DRL LKSFW               +Y + ++RQF +   +  E      SS S+R+ +F+SF  EKE   K   S++R+LE  S
Sbjct:  717 YDKALRDGPGKGGVAAVVDERAYIELFLSNRCEFGIVGQEFTKNGWGFAFPRNSPLAVDVSAAILQLSENGDMQRIRDKWLLRKACSLQGAEIEVDRLELKSFWGLFVVCGVACVLALAVYTVLMIRQFGQQCPEEAEGSIRRRSSPSARIHSFLSFVKEKEEDAKARSSRERQLEDIS 895          
BLAST of CX294586 vs. ExPASy Swiss-Prot
Match: GLR33_ARATH (Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=GLR3.3 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.584e-48
Identity = 100/205 (48.78%), Postives = 131/205 (63.90%), Query Frame = 2
Query:    2 YEKALTDGPKNGGVSAVIDERAYMEVFLSTRCEFSIIGQEFTRIGWGFAFPRDSPLAVDMSIAILELSENGDLQRIHDKWLTRSACSSQGAKQEADRLHLKSFWXXXXXXXXXXXXXXXIYLIQIVRQFARHYLD-----LQELESAGPSSQSSRLQTFISFAGEKEVVIKNLSKKRKLERASTGDIDKDKSTDGDLNGSVNPGN 601
            Y KAL DGP  GGV+A++DER Y+E+FLS+ C + I+GQEFT+ GWGFAFPRDSPLA+D+S AILEL+ENGDLQRIHDKWL ++AC+ + A+ E+DRLHLKSFW               +Y +QI+RQ  +   D      Q+      S +S+RLQ F+S   EKE   K+ SKKRK++ +        +S   D   S N  N
Sbjct:  727 YAKALKDGPSKGGVAAIVDERPYVELFLSSNCAYRIVGQEFTKSGWGFAFPRDSPLAIDLSTAILELAENGDLQRIHDKWLMKNACTLENAELESDRLHLKSFWGLFLICGVACLLALFLYFVQIIRQLYKKPTDDAIARDQQQNHDSSSMRSTRLQRFLSLMDEKE-ESKHESKKRKIDGSMNDTSGSTRSRGFDRERSFNSVN 930          
BLAST of CX294586 vs. ExPASy Swiss-Prot
Match: GLR32_ARATH (Glutamate receptor 3.2 OS=Arabidopsis thaliana GN=GLR3.2 PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 3.501e-37
Identity = 82/168 (48.81%), Postives = 110/168 (65.48%), Query Frame = 2
Query:   29 KNGGVSAVIDERAYMEVFLSTRCEFSIIGQEFTRIGWGFAFPRDSPLAVDMSIAILELSENGDLQRIHDKWLTRSACSSQG---AKQEADRLHLKSFWXXXXXXXXXXXXXXXIYLIQIVRQFARHYLDLQELESAGP-SSQSSRLQTFISFAGEKEVVIKNLSKKRK 520
            +NG V+A++DER Y+++FLS  C F+I GQEFTR GWGFAFPRDSPLA+DMS AIL LSE G LQ+IHDKWL+RS CS+     + +++++L L+SFW               IY  +IVR F RH    +E     P SS+S  LQTF+++  EKE   K   K+++
Sbjct:  733 QNGTVAAIVDERPYVDLFLSEFCGFAIRGQEFTRSGWGFAFPRDSPLAIDMSTAILGLSETGQLQKIHDKWLSRSNCSNLNGSVSDEDSEQLKLRSFWGLFLVCGISCFIALFIYFFKIVRDFFRHGKYDEEATVPSPESSRSKSLQTFLAYFDEKEDESKRRMKRKR 900          
BLAST of CX294586 vs. ExPASy Swiss-Prot
Match: GLR31_ARATH (Glutamate receptor 3.1 OS=Arabidopsis thaliana GN=GLR3.1 PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 5.972e-37
Identity = 82/169 (48.52%), Postives = 112/169 (66.27%), Query Frame = 2
Query:   29 KNGGVSAVIDERAYMEVFLSTRCEFSIIGQEFTRIGWGFAFPRDSPLAVDMSIAILELSENGDLQRIHDKWLTRSACSSQGAKQEAD--RLHLKSFWXXXXXXXXXXXXXXXIYLIQIVRQFARHYLDLQELESAGPSSQSSR---LQTFISFAGEKEVVIKNLSKKRK 520
            +NG V+A++DER Y+++FLS  C+F+I GQEFTR GWGFAFPRDSPLAVDMS AIL LSE G+LQ+IHD+WL++S CSS    Q  D  +L++ SFW               I+  +I+R F +   ++  +E A PS +SSR   LQTF++F  EKE   K   K+++
Sbjct:  733 QNGTVAAIVDERPYIDLFLSDYCKFAIRGQEFTRCGWGFAFPRDSPLAVDMSTAILGLSETGELQKIHDRWLSKSNCSSPHGSQSGDSEQLNVHSFWGMFLVVGIACLVALFIHFFKIIRDFCKDTPEV-VVEEAIPSPKSSRLTKLQTFLAFVDEKEEETKRRLKRKR 900          
BLAST of CX294586 vs. ExPASy Swiss-Prot
Match: GLR31_ORYSJ (Glutamate receptor 3.1 OS=Oryza sativa subsp. japonica GN=GLR3.1 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.602e-36
Identity = 84/182 (46.15%), Postives = 112/182 (61.54%), Query Frame = 2
Query:    2 YEKALTDGPKNGGVSAVIDERAYMEVFLSTRCEFSIIGQEFTRIGWGFAFPRDSPLAVDMSIAILELSENGDLQRIHDKWLTRSACSSQGAK---QEADRLHLKSFWXXXXXXXXXXXXXXXIYLIQIVRQFARHYLD-----LQELESAGPSSQS--SRLQTFISFAGEKEVVIKNLSKKR 517
            Y+KAL  GP  GGV+A++DER Y+E+FL    +F+++G EFT+ GWGFAFPRDSPL+VD+S AILELSENGDLQRIHDKWL     S   A    Q+ DRL + SF                I+   +  Q++RH  +     LQ   S G  S S  S+LQ+F+SFA  +E  I+  +K++
Sbjct:  729 YKKALDLGPSKGGVAAIVDERPYIELFLYQNPKFAVVGSEFTKSGWGFAFPRDSPLSVDLSTAILELSENGDLQRIHDKWLASDMSSMSQASELDQDPDRLDVYSFSALFLICGLACIFALAIHACNLFYQYSRHAAEEDPAALQPSASDGSRSLSRRSKLQSFLSFADRREADIRRAAKEK 910          
BLAST of CX294586 vs. ExPASy Swiss-Prot
Match: GLR34_ARATH (Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=GLR3.4 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 4.896e-31
Identity = 80/190 (42.11%), Postives = 106/190 (55.79%), Query Frame = 2
Query:    2 YEKALTDGPKNGGVSAVIDERAYMEVFLS-TRCEFSIIGQEFTRIGWGFAFPRDSPLAVDMSIAILELSENGDLQRIHDKWLT-RSACSSQGAKQEADRLHLKSFWXXXXXXXXXXXXXXXIYLIQIVRQFARHYLDLQELESAGPSSQSSRLQTFISFAGEKEVVIKNLSKKRKLERASTGDIDKDKST 565
            Y  AL  GP  GGV+A++DE  Y+EV L+ + C+F  +GQEFTR GWGFAF RDSPLAVDMS AIL+LSE G+L++IH KWL  +  CS Q +  E  +L LKSFW               ++  ++  Q+ R   +  + E AG  S+ SR     S  G +    K L K      A   +I K KS+
Sbjct:  754 YLSALQRGPNAGGVAAIVDELPYIEVLLTNSNCKFRTVGQEFTRTGWGFAFQRDSPLAVDMSTAILQLSEEGELEKIHRKWLNYKHECSMQISNSEDSQLSLKSFWGLFLICGITCFMALTVFFWRVFWQYQRLLPESADEERAGEVSEPSR-----SGRGSRAPSFKELIKVVDKREAEIKEILKQKSS 938          
BLAST of CX294586 vs. ExPASy Swiss-Prot
Match: GLR37_ARATH (Glutamate receptor 3.7 OS=Arabidopsis thaliana GN=GLR3.7 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 5.986e-29
Identity = 75/181 (41.44%), Postives = 107/181 (59.12%), Query Frame = 2
Query:    2 YEKALTDGPKN-GGVSAVIDERAYMEVFLSTRCEFSIIGQEFTRIGWGFAFPRDSPLAVDMSIAILELSENGDLQRIHDKWLTRSACSSQGA-KQEADRLHLKSFWXXXXXXXXXXXXXXXIYLIQIVRQFARHYLDLQELESAGPSSQSS----RLQ----TFISFAGEKEVVIKNLSKK 514
            YEKAL  GP N GGV+A++DE  Y+E+FL+ R  F I+G+ F   GWGFAF RDSPLA+DMS AIL+LSE   LQ I  KWL ++ C+ +     E ++LHLKSF                +++++++RQF R Y  ++   S   +S S+    RL+     F+ F  EKE  IK + ++
Sbjct:  719 YEKALKLGPTNWGGVAAIVDELPYIELFLAERTGFKIVGEPFMHRGWGFAFKRDSPLAIDMSTAILKLSETRKLQEIRKKWLCKTNCAGKSNWNPEPNQLHLKSFKGLYLVCIAITVSAFLVFVLRMIRQFVR-YRRMERTSSMPRASWSASPTLRLRELVFDFVEFVDEKEEAIKRMFRR 898          
BLAST of CX294586 vs. ExPASy Swiss-Prot
Match: GLR35_ARATH (Glutamate receptor 3.5 OS=Arabidopsis thaliana GN=GLR3.5 PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.248e-26
Identity = 70/202 (34.65%), Postives = 108/202 (53.47%), Query Frame = 2
Query:    2 YEKALTDGPKNGGVSAVIDERAYMEVFLS-TRCEFSIIGQEFTRIGWGFAFPRDSPLAVDMSIAILELSENGDLQRIHDKWLTRS-ACSSQGAKQEADRLHLKSFWXXXXXXXXXXXXXXXIYLIQIVRQFAR-HYLDLQELESAGPSSQSSR--------LQTFISFAGEKEVVIKNLSKKRKLERASTGDIDKDKSTDGD 574
            Y  AL  GP+ GGV+A++DE  Y++  LS + C+F  +GQEFTR GWGFAF RDSPLAVDMS AIL+L+E G L++I  KWLT    C+ Q +  E  ++ ++SFW               ++  ++  Q+ R    +  E+++    + SSR         +  I    ++E  IK + K++  ++   G    + S   D
Sbjct:  747 YLSALQRGPRGGGVAAIVDELPYIKALLSNSNCKFRTVGQEFTRTGWGFAFQRDSPLAVDMSTAILQLAEEGKLEKIRKKWLTYDHECTMQISDTENYQISVQSFWGLFLICGVVWFIALTLFCWKVFWQYQRLRPEESDEVQARSEEAGSSRGKSLRAVSFKDLIKVVDKREAEIKEMLKEKSSKKLKDGQSSAENSQSKD 948          
BLAST of CX294586 vs. ExPASy Swiss-Prot
Match: GLR28_ARATH (Glutamate receptor 2.8 OS=Arabidopsis thaliana GN=GLR2.8 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.189e-14
Identity = 39/96 (40.62%), Postives = 60/96 (62.50%), Query Frame = 2
Query:   32 NGGVSAVIDERAYMEVFLSTRC-EFSIIGQEFTRIGWGFAFPRDSPLAVDMSIAILELSENGDLQRIHDKW-LTRSACSSQGAKQEADRLHLKSFW 313
            NG +SA  DE AY+   LS  C +++I+   F   G+GFAFPR+SPL  D+S AIL +++  ++Q I +KW + ++ C        ++RL L+SFW
Sbjct:  723 NGSISAAFDEVAYLRAILSQYCSKYAIVEPTFKTAGFGFAFPRNSPLTGDVSKAILNVTQGDEMQHIENKWFMKQNDCPDPKTALSSNRLSLRSFW 818          
BLAST of CX294586 vs. ExPASy Swiss-Prot
Match: GLR29_ARATH (Glutamate receptor 2.9 OS=Arabidopsis thaliana GN=GLR2.9 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.628e-11
Identity = 36/96 (37.50%), Postives = 58/96 (60.42%), Query Frame = 2
Query:   29 KNGGVSAVIDERAYMEVFLSTRC-EFSIIGQEFTRIGWGFAFPRDSPLAVDMSIAILELSENGDLQRIHDKWL-TRSACSSQGAKQEADRLHLKSF 310
            K+ G++A  DE AY++  LS  C ++ ++   F   G+GFAFP++SPL  + S AIL L++N   Q+I D+W   ++ C        ++RL+L SF
Sbjct:  714 KSKGIAAAFDEVAYLKAILSQSCSKYVMVEPTFKTGGFGFAFPKNSPLTGEFSRAILNLTQNNVTQQIEDRWFPKKNDCPDPMTALSSNRLNLSSF 809          
The following BLAST results are available for this feature:
BLAST of CX294586 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
GLR36_ARATH1.515e-4855.31Glutamate receptor 3.6 OS=Arabidopsis thaliana GN=... [more]
GLR33_ARATH2.584e-4848.78Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=... [more]
GLR32_ARATH3.501e-3748.81Glutamate receptor 3.2 OS=Arabidopsis thaliana GN=... [more]
GLR31_ARATH5.972e-3748.52Glutamate receptor 3.1 OS=Arabidopsis thaliana GN=... [more]
GLR31_ORYSJ6.602e-3646.15Glutamate receptor 3.1 OS=Oryza sativa subsp. japo... [more]
GLR34_ARATH4.896e-3142.11Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=... [more]
GLR37_ARATH5.986e-2941.44Glutamate receptor 3.7 OS=Arabidopsis thaliana GN=... [more]
GLR35_ARATH1.248e-2634.65Glutamate receptor 3.5 OS=Arabidopsis thaliana GN=... [more]
GLR28_ARATH3.189e-1440.63Glutamate receptor 2.8 OS=Arabidopsis thaliana GN=... [more]
GLR29_ARATH5.628e-1137.50Glutamate receptor 2.9 OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionC05054F12SK FlavRip1 Citrus clementina cDNA clone C05054F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294586 ID=CX294586; Name=CX294586; organism=Citrus clementina; type=EST; length=651bp
ATATGAGAAAGCCTTAACTGATGGTCCCAAAAACGGTGGTGTTTCAGCAG
TAATCGATGAACGTGCGTACATGGAGGTCTTCCTCTCTACACGTTGTGAA
TTCAGCATCATAGGCCAAGAATTTACCAGAATTGGGTGGGGATTTGCATT
TCCAAGGGACTCACCTCTTGCAGTTGACATGTCAATTGCCATCCTGGAAC
TATCAGAGAATGGAGATCTGCAAAGAATTCATGACAAGTGGCTCACAAGA
AGCGCTTGCAGTTCACAAGGCGCAAAGCAAGAAGCAGACCGGCTTCATCT
TAAAAGCTTTTGGGGCCTCTTTGTTTTGTGTGGTGTAGCTTGCTTGCTTG
CTCTCTTAATATATCTCATACAGATTGTACGCCAGTTTGCCAGGCATTAT
CTGGACTTGCAAGAGCTTGAGTCTGCAGGTCCAAGCTCACAAAGTTCACG
TCTTCAAACATTTATTTCATTTGCCGGCGAGAAGGAAGTCGTAATAAAAA
ATCTCTCCAAGAAAAGAAAATTGGAGAGGGCGTCAACTGGAGACATAGAT
AAAGATAAATCCACGGACGGGGACTTAAATGGGAGTGTTAATCCTGGTAA
TGAAGCCAAATTAGTTGCATTTGAGGTCTTTGGTCATAATTCGCATTTTT
A
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