CX294590

Overview
NameCX294590
Unique NameCX294590
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length427
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11452 contig Ccv1_Contig11452:295..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294590 vs. ExPASy Swiss-Prot
Match: IDI1_ARATH (Isopentenyl-diphosphate Delta-isomerase I OS=Arabidopsis thaliana GN=IPP1 PE=2 SV=2)

HSP 1 Score: 248.054 bits (632), Expect = 1.113e-65
Identity = 120/139 (86.33%), Postives = 124/139 (89.21%), Query Frame = 2
Query:   11 NDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELVICAEDVPVDEFTPLGRILYMASSDGTWVEHELDYLLFIVRDASFTPN 427
            NDRVVGH+ KYNCHLMEKIE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELIEEN LGVRNAAQRKL DEL I AEDVPVDEFTPLGR+LY A SDG W EHE+DYLLFIVRD    PN
Sbjct:   28 NDRVVGHDTKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQQRSKTKVTFPLVWTNTCCSHPLYRESELIEENVLGVRNAAQRKLFDELGIVAEDVPVDEFTPLGRMLYKAPSDGKWGEHEVDYLLFIVRDVKLQPN 166          
BLAST of CX294590 vs. ExPASy Swiss-Prot
Match: IDI2_ARATH (Isopentenyl-diphosphate Delta-isomerase II OS=Arabidopsis thaliana GN=IPP2 PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 2.479e-65
Identity = 119/138 (86.23%), Postives = 125/138 (90.58%), Query Frame = 2
Query:   14 DRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELVICAEDVPVDEFTPLGRILYMASSDGTWVEHELDYLLFIVRDASFTPN 427
            DRVVGH++KYNCHLME IE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI++NALGVRNAAQRKLLDEL I AEDVPVDEFTPLGR+LY A SDG W EHELDYLLFIVRD    PN
Sbjct:   80 DRVVGHDSKYNCHLMENIEAKNLLHRAFSVFLFNSKYELLLQQRSNTKVTFPLVWTNTCCSHPLYRESELIQDNALGVRNAAQRKLLDELGIVAEDVPVDEFTPLGRMLYKAPSDGKWGEHELDYLLFIVRDVKVQPN 217          
BLAST of CX294590 vs. ExPASy Swiss-Prot
Match: IDI1_CAMAC (Isopentenyl-diphosphate Delta-isomerase I OS=Camptotheca acuminata GN=IPI1 PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 3.237e-65
Identity = 120/139 (86.33%), Postives = 124/139 (89.21%), Query Frame = 2
Query:   11 NDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELVICAEDVPVDEFTPLGRILYMASSDGTWVEHELDYLLFIVRDASFTPN 427
            ND VVGH+ KYNCHLMEKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+ENALG RNAAQRKLLDEL I AEDVPVD+F PLGRILY A SDG W EHELDYLLFIVRD +  PN
Sbjct:   29 NDNVVGHDTKYNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIKENALGARNAAQRKLLDELGIPAEDVPVDQFIPLGRILYKAPSDGKWGEHELDYLLFIVRDVNVNPN 167          
BLAST of CX294590 vs. ExPASy Swiss-Prot
Match: IDI1_CLABR (Isopentenyl-diphosphate Delta-isomerase I OS=Clarkia breweri GN=IPI1 PE=2 SV=2)

HSP 1 Score: 245.358 bits (625), Expect = 7.212e-65
Identity = 118/139 (84.89%), Postives = 125/139 (89.93%), Query Frame = 2
Query:   11 NDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELVICAEDVPVDEFTPLGRILYMASSDGTWVEHELDYLLFIVRDASFTPN 427
            ND+VVGHE+KYNCHLMEKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+EN LGVRNAAQRKLLDEL I AED+PVD+F PL RILY A SDG W EHELDYLLFI+RD +  PN
Sbjct:   82 NDKVVGHESKYNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENCLGVRNAAQRKLLDELGIPAEDLPVDQFIPLSRILYKAPSDGKWGEHELDYLLFIIRDVNLDPN 220          
BLAST of CX294590 vs. ExPASy Swiss-Prot
Match: IDI2_CAMAC (Isopentenyl-diphosphate Delta-isomerase II OS=Camptotheca acuminata GN=IPI2 PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 3.579e-64
Identity = 117/139 (84.17%), Postives = 124/139 (89.21%), Query Frame = 2
Query:   11 NDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELVICAEDVPVDEFTPLGRILYMASSDGTWVEHELDYLLFIVRDASFTPN 427
            ND VVGH+ KYNCHLMEKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHP YRESEL++ENALGVRNAAQRKLLDEL I AEDVPVD+F PLGR+LY A SDG W EHELDYLLFI+RD +  PN
Sbjct:  103 NDHVVGHDTKYNCHLMEKIESDNLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPRYRESELVDENALGVRNAAQRKLLDELGIPAEDVPVDQFIPLGRMLYKAPSDGKWGEHELDYLLFIIRDVNVHPN 241          
BLAST of CX294590 vs. ExPASy Swiss-Prot
Match: IDI2_CLABR (Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia breweri GN=IPI2 PE=3 SV=2)

HSP 1 Score: 240.736 bits (613), Expect = 1.776e-63
Identity = 117/138 (84.78%), Postives = 124/138 (89.86%), Query Frame = 2
Query:   14 DRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELVICAEDVPVDEFTPLGRILYMASSDGTWVEHELDYLLFIVRDASFTPN 427
            DRVVGHE+KYNCH+ EKIES N+LHRAFSVFLFNSK+ELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+EN LGVRNAAQRKLLDEL I AEDVPVDEFTPL R+LY A SDG W EHELDYLLFIVRD +  PN
Sbjct:   82 DRVVGHESKYNCHMWEKIESGNMLHRAFSVFLFNSKFELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENNLGVRNAAQRKLLDELGIPAEDVPVDEFTPLSRMLYKAPSDGKWGEHELDYLLFIVRDVAVHPN 219          
BLAST of CX294590 vs. ExPASy Swiss-Prot
Match: IDI2_CLAXA (Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia xantiana GN=IPI2 PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 4.375e-62
Identity = 115/138 (83.33%), Postives = 122/138 (88.41%), Query Frame = 2
Query:   14 DRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELVICAEDVPVDEFTPLGRILYMASSDGTWVEHELDYLLFIVRDASFTPN 427
            D VVGHE+KYNCHL EKIES N+LHRAF+VFLFNSK+ELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+EN LGVRNAAQRKLLDEL I AEDVPVDEFTP+ R+LY A SDG W EHELDYLLFIVRD    PN
Sbjct:   86 DCVVGHESKYNCHLWEKIESGNMLHRAFTVFLFNSKFELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENNLGVRNAAQRKLLDELGIPAEDVPVDEFTPVSRMLYKAPSDGKWGEHELDYLLFIVRDVGIHPN 223          
BLAST of CX294590 vs. ExPASy Swiss-Prot
Match: IDI1_MACFA (Isopentenyl-diphosphate Delta-isomerase 1 OS=Macaca fascicularis GN=IDI1 PE=2 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 1.159e-38
Identity = 81/139 (58.27%), Postives = 98/139 (70.50%), Query Frame = 2
Query:   11 NDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELVICAEDVPVDEFTPLGRILYMASSDGTWVEHELDYLLFIVRDASFTPN 427
            ND  +G E K NCHL E IE   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TNTCCSHPL    EL E +ALGVR AAQR+L  EL I  E+VP +E   L RI Y A SDG W EHE+DY+LF+ ++ +  P+
Sbjct:   27 NDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPGELEENDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILFVRKNVTLNPD 164          
BLAST of CX294590 vs. ExPASy Swiss-Prot
Match: IDI1_HUMAN (Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo sapiens GN=IDI1 PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 4.406e-38
Identity = 80/139 (57.55%), Postives = 98/139 (70.50%), Query Frame = 2
Query:   11 NDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELVICAEDVPVDEFTPLGRILYMASSDGTWVEHELDYLLFIVRDASFTPN 427
            ND  +G E K NCHL E IE   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TNTCCSHPL   +EL E +ALGVR AAQR+L  EL I  E+VP +E   L RI Y A SDG W EHE+DY+L + ++ +  P+
Sbjct:   27 NDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRKNVTLNPD 164          
BLAST of CX294590 vs. ExPASy Swiss-Prot
Match: IDI1_BOVIN (Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos taurus GN=IDI1 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 5.754e-38
Identity = 80/139 (57.55%), Postives = 98/139 (70.50%), Query Frame = 2
Query:   11 NDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELVICAEDVPVDEFTPLGRILYMASSDGTWVEHELDYLLFIVRDASFTPN 427
            NDR +G E K NCHL E IE   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TNTCCSHPL   SEL E +A+GVR AAQR+L  EL I  E+VP +E   L RI Y A SD  W EHE+DY+L + ++ +  P+
Sbjct:   27 NDRRIGAETKKNCHLNENIER-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPSELEENDAIGVRRAAQRRLKAELGIPMEEVPPEEINYLTRIHYKAQSDSIWGEHEIDYILLVKKNVTLNPD 164          
The following BLAST results are available for this feature:
BLAST of CX294590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
IDI1_ARATH1.113e-6586.33Isopentenyl-diphosphate Delta-isomerase I OS=Arabi... [more]
IDI2_ARATH2.479e-6586.23Isopentenyl-diphosphate Delta-isomerase II OS=Arab... [more]
IDI1_CAMAC3.237e-6586.33Isopentenyl-diphosphate Delta-isomerase I OS=Campt... [more]
IDI1_CLABR7.212e-6584.89Isopentenyl-diphosphate Delta-isomerase I OS=Clark... [more]
IDI2_CAMAC3.579e-6484.17Isopentenyl-diphosphate Delta-isomerase II OS=Camp... [more]
IDI2_CLABR1.776e-6384.78Isopentenyl-diphosphate Delta-isomerase II OS=Clar... [more]
IDI2_CLAXA4.375e-6283.33Isopentenyl-diphosphate Delta-isomerase II OS=Clar... [more]
IDI1_MACFA1.159e-3858.27Isopentenyl-diphosphate Delta-isomerase 1 OS=Macac... [more]
IDI1_HUMAN4.406e-3857.55Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo ... [more]
IDI1_BOVIN5.754e-3857.55Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos t... [more]

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Properties
Property NameValue
Genbank descriptionC05054G09SK FlavRip1 Citrus clementina cDNA clone C05054G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294590 ID=CX294590; Name=CX294590; organism=Citrus clementina; type=EST; length=427bp
GGCACGAGGGAATGATCGCGTTGTTGGTCATGAAAACAAATACAACTGTC
ACTTGATGGAAAAGATTGAGTCTTTGAATTTGCTACACAGAGCCTTCAGC
GTATTTTTGTTTAACTCAAAATATGAGCTACTCCTTCAGCAACGCTCTGG
AACCAAAGTTACCTTCCCTCTTGTGTGGACTAACACCTGCTGCAGCCATC
CTCTGTACCGTGAATCTGAGCTTATTGAGGAGAACGCTCTTGGGGTGAGG
AATGCTGCACAAAGAAAGCTTTTGGATGAGCTGGTCATTTGTGCTGAAGA
TGTGCCAGTTGATGAGTTCACTCCACTGGGTCGCATTCTGTACATGGCCT
CTTCTGATGGCACGTGGGTCGAGCATGAACTTGACTACTTACTTTTCATT
GTCCGAGATGCTAGCTTTACCCCAAAT
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