CX294591
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX294591 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 4.147e-43 Identity = 93/158 (58.86%), Postives = 115/158 (72.78%), Query Frame = -3 Query: 171 RAITELGPHFGAEGLLKGQVTDLDSEGK-DVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSKAAPLYHLAKYIVSRQN 641 RA+ EL GAEGL+ GQV D++SEG +V L +LE+IH+HKTAKLLE + +E++R YAR IGLLFQVVDDILDVTKSS LGKTAGKDLV+DK TYPKL+GIE +++FAE+L +A ++LA F+ KAAPL LA YI RQN Sbjct: 213 RAVGELAKAIGAEGLVAGQVVDINSEGSSEVDLEKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSREFAEKLNKEAQEQLAGFDPEKAAPLIALANYIAHRQN 370
BLAST of CX294591 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 4.585e-42 Identity = 92/160 (57.50%), Postives = 112/160 (70.00%), Query Frame = -3 Query: 171 RAITELGPHFGAEGLLKGQVTDLDSEGKD---VSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSKAAPLYHLAKYIVSRQN 641 RA+ EL G EGL+ GQV D+ SEG D V L L++IH+HKTA LLEAS IER+R +ARCIGLLFQVVDDILDVTKSS LGKTAGKDL++DK TYPKLMG+E +++FAE+L ++A +L F+ K APL LA YI +RQN Sbjct: 207 RAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLIADKLTYPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANRQN 366
BLAST of CX294591 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2) HSP 1 Score: 170.629 bits (431), Expect = 5.988e-42 Identity = 92/160 (57.50%), Postives = 110/160 (68.75%), Query Frame = -3 Query: 171 RAITELGPHFGAEGLLKGQVTDLDSEG---KDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSKAAPLYHLAKYIVSRQN 641 RA+ EL G EGL+ GQV D+ SEG DV L LE+IH+HKTA LLEAS IER+R +ARCIGLLFQVVDDILDVTKSS LGKTAGKDL++DK TYPK+MG+E +++FAE+L +A +L F+ K APL LA YI RQN Sbjct: 212 RAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAALLEASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDILDVTKSSKELGKTAGKDLIADKLTYPKIMGLEKSREFAEKLNREARDQLLGFDSDKVAPLLALANYIAYRQN 371
BLAST of CX294591 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 8.646e-41 Identity = 90/158 (56.96%), Postives = 110/158 (69.62%), Query Frame = -3 Query: 171 RAITELGPHFGAEGLLKGQVTDLDSEG-KDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSKAAPLYHLAKYIVSRQN 641 R + EL G+EGL+ GQV D+ SEG DV L LE+IH+HKTA LLE S I ++R +ARCIGLLFQVVDDILDVTKSS LGKTAGKDLV+DK TYPKL+GI+ +++FAE+L +A ++LA F+ KAAPL LA YI R N Sbjct: 200 RVVGELAKCIGSEGLVAGQVVDVCSEGIADVGLEHLEFIHIHKTAALLEGSVVLGAIVGGANDEQISKLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIDKSREFAEKLNREAQEQLAEFDPEKAAPLIALANYIAYRDN 357
BLAST of CX294591 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 5.604e-40 Identity = 90/157 (57.32%), Postives = 106/157 (67.52%), Query Frame = -3 Query: 171 AITELGPHFGAEGLLKGQVTDLDSEGK-DVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSKAAPLYHLAKYIVSRQN 638 A+ EL G EGL+ GQV D+ G VSL LE+IHVHKTA LLE+S +E++R +ARCIGLLFQVVDDILDVTKSS LGKTAGKDLV DK TYPKL+G+E AK+FA EL +A ++L F+ KAAPL LA YI R N Sbjct: 213 AVAELAKSIGTEGLVAGQVADIKCTGNASVSLETLEFIHVHKTAALLESSVVLGAILGGGTNVEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLVVDKTTYPKLLGLEKAKEFAAELNREAKQQLEGFDSRKAAPLIALADYIAYRDN 369
BLAST of CX294591 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 1.526e-37 Identity = 85/160 (53.12%), Postives = 103/160 (64.38%), Query Frame = -3 Query: 171 RAITELGPHFGAEGLLKGQVTDLDSEG---KDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSKAAPLYHLAKYIVSRQN 641 RA+ EL G +GL+ GQ DL SEG DV L +LEYIHVHKT LLEAS IE+VRN+ARCIGLLFQVVDDILD TKSS LGKTAGKD V+ K TYPK++G+E +K+F E+L A + L F+ K PL L +I +R + Sbjct: 213 RAVKELAKSIGTKGLVAGQAKDLSSEGLEQNDVGLEDLEYIHVHKTGSLLEASAVIGAVIGGGTEKEIEKVRNFARCIGLLFQVVDDILDETKSSEELGKTAGKDKVAGKLTYPKVIGVEKSKEFVEKLKRDAREHLQGFDSDKVKPLIALTNFIANRNH 372
BLAST of CX294591 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 7.574e-37 Identity = 85/160 (53.12%), Postives = 108/160 (67.50%), Query Frame = -3 Query: 171 RAITELGPHFGAEGLLKGQVTDLDSEGKD---VSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSKAAPLYHLAKYIVSRQN 641 RA+ EL G GL+ GQ+ DL SE + V L LE+IH+HKTA LLEA+ IE++R YARCIGLLFQVVDDILDVTKS+ LGKTAGKD+++ K TYP+L+G+E +K+ AE+L +A ++L F+ SKAAPL LA YI R N Sbjct: 201 RAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAAAVLGVIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTYPRLIGLERSKEVAEKLRREAEEQLLGFDPSKAAPLVALASYIACRHN 360
BLAST of CX294591 vs. ExPASy Swiss-Prot
Match: GGPP6_ARATH (Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2) HSP 1 Score: 148.673 bits (374), Expect = 2.437e-35 Identity = 79/162 (48.77%), Postives = 105/162 (64.81%), Query Frame = -3 Query: 171 RAITELGPHFGAEGLLKGQVTDLDSE-----GKDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSKAAPLYHLAKYIVSRQN 641 RA+ E+ G EGL+ GQ DL E +D L LE +HVHKTA L+EA+ IER+++YARC+GL+FQV+DD+LD TKSS LGKTAGKDL++ K TYPK+MG++NA+++A+ L +A + L F+ K PL LA YIV RQN Sbjct: 175 RAVQEMARAVGTEGLVAGQAADLAGERMSFKNEDDELRYLELMHVHKTAVLVEAAAVVGAIMGGGSDEEIERLKSYARCVGLMFQVMDDVLDETKSSEELGKTAGKDLITGKLTYPKVMGVDNAREYAKRLNREAQEHLQGFDSDKVVPLLSLADYIVKRQN 336
BLAST of CX294591 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2) HSP 1 Score: 142.895 bits (359), Expect = 1.337e-33 Identity = 80/157 (50.96%), Postives = 96/157 (61.15%), Query Frame = -3 Query: 177 AITELGPHFGAEGLLKGQVTDLDSEGKD---VSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSKAAPLYHLAKYIVSR 638 A+ EL G GL+ GQ D+ SEG D V L LE+IHVHKTA LLE + IE VR +ARCIGLLFQVVDDILD TKSS LGKTAGKD ++ K TYPKL+G+E +K+F + L A + L F K APL L +I +R Sbjct: 218 AVRELARSIGTRGLVAGQAMDISSEGLDLNEVGLEHLEFIHVHKTAVLLETAAVLGAIIGGGSDEEIESVRKFARCIGLLFQVVDDILDETKSSEELGKTAGKDQLAGKLTYPKLIGLEKSKEFVKRLTKDARQHLQGFSSEKVAPLVALTTFIANR 374
BLAST of CX294591 vs. ExPASy Swiss-Prot
Match: CRTE_CYAPA (Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 1.870e-27 Identity = 66/158 (41.77%), Postives = 94/158 (59.49%), Query Frame = -3 Query: 171 RAITELGPHFGAEGLLKGQVTDLDSEGK-DVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSKAAPLYHLAKYIVSRQN 641 + I ++ GL+ GQ+ DL SEGK D +L L +IH+HKT LLEA+ + R YA+ IGL FQ++DD+LD+ + LGK+ GKDL + KATYP G+E + K AE L +A +E+ YF+ +KA PL +A +IV+R N Sbjct: 144 KVIAQVAHSVTTSGLVGGQIIDLSSEGKSDTTLETLNFIHIHKTGALLEAAVLSGALLAGAKEKDMNRFLRYAQNIGLAFQIIDDVLDIISTEEKLGKSIGKDLKTQKATYPSFWGVEESIKQAELLVEEAKEEILYFD-NKAIPLIAIADFIVNRNN 300 The following BLAST results are available for this feature:
BLAST of CX294591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >CX294591 ID=CX294591; Name=CX294591; organism=Citrus clementina; type=EST; length=643bpback to top |