CX294591

Overview
NameCX294591
Unique NameCX294591
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length643
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10613 contig Ccv1_Contig10613:644..1286. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294591 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.147e-43
Identity = 93/158 (58.86%), Postives = 115/158 (72.78%), Query Frame = -3
Query:  171 RAITELGPHFGAEGLLKGQVTDLDSEGK-DVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSKAAPLYHLAKYIVSRQN 641
            RA+ EL    GAEGL+ GQV D++SEG  +V L +LE+IH+HKTAKLLE +              +E++R YAR IGLLFQVVDDILDVTKSS  LGKTAGKDLV+DK TYPKL+GIE +++FAE+L  +A ++LA F+  KAAPL  LA YI  RQN
Sbjct:  213 RAVGELAKAIGAEGLVAGQVVDINSEGSSEVDLEKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSREFAEKLNKEAQEQLAGFDPEKAAPLIALANYIAHRQN 370          
BLAST of CX294591 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.585e-42
Identity = 92/160 (57.50%), Postives = 112/160 (70.00%), Query Frame = -3
Query:  171 RAITELGPHFGAEGLLKGQVTDLDSEGKD---VSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSKAAPLYHLAKYIVSRQN 641
            RA+ EL    G EGL+ GQV D+ SEG D   V L  L++IH+HKTA LLEAS              IER+R +ARCIGLLFQVVDDILDVTKSS  LGKTAGKDL++DK TYPKLMG+E +++FAE+L ++A  +L  F+  K APL  LA YI +RQN
Sbjct:  207 RAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLIADKLTYPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANRQN 366          
BLAST of CX294591 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 5.988e-42
Identity = 92/160 (57.50%), Postives = 110/160 (68.75%), Query Frame = -3
Query:  171 RAITELGPHFGAEGLLKGQVTDLDSEG---KDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSKAAPLYHLAKYIVSRQN 641
            RA+ EL    G EGL+ GQV D+ SEG    DV L  LE+IH+HKTA LLEAS              IER+R +ARCIGLLFQVVDDILDVTKSS  LGKTAGKDL++DK TYPK+MG+E +++FAE+L  +A  +L  F+  K APL  LA YI  RQN
Sbjct:  212 RAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAALLEASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDILDVTKSSKELGKTAGKDLIADKLTYPKIMGLEKSREFAEKLNREARDQLLGFDSDKVAPLLALANYIAYRQN 371          
BLAST of CX294591 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 8.646e-41
Identity = 90/158 (56.96%), Postives = 110/158 (69.62%), Query Frame = -3
Query:  171 RAITELGPHFGAEGLLKGQVTDLDSEG-KDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSKAAPLYHLAKYIVSRQN 641
            R + EL    G+EGL+ GQV D+ SEG  DV L  LE+IH+HKTA LLE S              I ++R +ARCIGLLFQVVDDILDVTKSS  LGKTAGKDLV+DK TYPKL+GI+ +++FAE+L  +A ++LA F+  KAAPL  LA YI  R N
Sbjct:  200 RVVGELAKCIGSEGLVAGQVVDVCSEGIADVGLEHLEFIHIHKTAALLEGSVVLGAIVGGANDEQISKLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIDKSREFAEKLNREAQEQLAEFDPEKAAPLIALANYIAYRDN 357          
BLAST of CX294591 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.604e-40
Identity = 90/157 (57.32%), Postives = 106/157 (67.52%), Query Frame = -3
Query:  171 AITELGPHFGAEGLLKGQVTDLDSEGK-DVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSKAAPLYHLAKYIVSRQN 638
            A+ EL    G EGL+ GQV D+   G   VSL  LE+IHVHKTA LLE+S              +E++R +ARCIGLLFQVVDDILDVTKSS  LGKTAGKDLV DK TYPKL+G+E AK+FA EL  +A ++L  F+  KAAPL  LA YI  R N
Sbjct:  213 AVAELAKSIGTEGLVAGQVADIKCTGNASVSLETLEFIHVHKTAALLESSVVLGAILGGGTNVEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLVVDKTTYPKLLGLEKAKEFAAELNREAKQQLEGFDSRKAAPLIALADYIAYRDN 369          
BLAST of CX294591 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.526e-37
Identity = 85/160 (53.12%), Postives = 103/160 (64.38%), Query Frame = -3
Query:  171 RAITELGPHFGAEGLLKGQVTDLDSEG---KDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSKAAPLYHLAKYIVSRQN 641
            RA+ EL    G +GL+ GQ  DL SEG    DV L +LEYIHVHKT  LLEAS              IE+VRN+ARCIGLLFQVVDDILD TKSS  LGKTAGKD V+ K TYPK++G+E +K+F E+L   A + L  F+  K  PL  L  +I +R +
Sbjct:  213 RAVKELAKSIGTKGLVAGQAKDLSSEGLEQNDVGLEDLEYIHVHKTGSLLEASAVIGAVIGGGTEKEIEKVRNFARCIGLLFQVVDDILDETKSSEELGKTAGKDKVAGKLTYPKVIGVEKSKEFVEKLKRDAREHLQGFDSDKVKPLIALTNFIANRNH 372          
BLAST of CX294591 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.574e-37
Identity = 85/160 (53.12%), Postives = 108/160 (67.50%), Query Frame = -3
Query:  171 RAITELGPHFGAEGLLKGQVTDLDSEGKD---VSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSKAAPLYHLAKYIVSRQN 641
            RA+ EL    G  GL+ GQ+ DL SE  +   V L  LE+IH+HKTA LLEA+              IE++R YARCIGLLFQVVDDILDVTKS+  LGKTAGKD+++ K TYP+L+G+E +K+ AE+L  +A ++L  F+ SKAAPL  LA YI  R N
Sbjct:  201 RAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAAAVLGVIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTYPRLIGLERSKEVAEKLRREAEEQLLGFDPSKAAPLVALASYIACRHN 360          
BLAST of CX294591 vs. ExPASy Swiss-Prot
Match: GGPP6_ARATH (Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.437e-35
Identity = 79/162 (48.77%), Postives = 105/162 (64.81%), Query Frame = -3
Query:  171 RAITELGPHFGAEGLLKGQVTDLDSE-----GKDVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSKAAPLYHLAKYIVSRQN 641
            RA+ E+    G EGL+ GQ  DL  E      +D  L  LE +HVHKTA L+EA+              IER+++YARC+GL+FQV+DD+LD TKSS  LGKTAGKDL++ K TYPK+MG++NA+++A+ L  +A + L  F+  K  PL  LA YIV RQN
Sbjct:  175 RAVQEMARAVGTEGLVAGQAADLAGERMSFKNEDDELRYLELMHVHKTAVLVEAAAVVGAIMGGGSDEEIERLKSYARCVGLMFQVMDDVLDETKSSEELGKTAGKDLITGKLTYPKVMGVDNAREYAKRLNREAQEHLQGFDSDKVVPLLSLADYIVKRQN 336          
BLAST of CX294591 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.337e-33
Identity = 80/157 (50.96%), Postives = 96/157 (61.15%), Query Frame = -3
Query:  177 AITELGPHFGAEGLLKGQVTDLDSEGKD---VSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSKAAPLYHLAKYIVSR 638
            A+ EL    G  GL+ GQ  D+ SEG D   V L  LE+IHVHKTA LLE +              IE VR +ARCIGLLFQVVDDILD TKSS  LGKTAGKD ++ K TYPKL+G+E +K+F + L   A + L  F   K APL  L  +I +R
Sbjct:  218 AVRELARSIGTRGLVAGQAMDISSEGLDLNEVGLEHLEFIHVHKTAVLLETAAVLGAIIGGGSDEEIESVRKFARCIGLLFQVVDDILDETKSSEELGKTAGKDQLAGKLTYPKLIGLEKSKEFVKRLTKDARQHLQGFSSEKVAPLVALTTFIANR 374          
BLAST of CX294591 vs. ExPASy Swiss-Prot
Match: CRTE_CYAPA (Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.870e-27
Identity = 66/158 (41.77%), Postives = 94/158 (59.49%), Query Frame = -3
Query:  171 RAITELGPHFGAEGLLKGQVTDLDSEGK-DVSLSELEYIHVHKTAKLLEASXXXXXXXXXXXXXXIERVRNYARCIGLLFQVVDDILDVTKSSTVLGKTAGKDLVSDKATYPKLMGIENAKKFAEELFSQATKELAYFEVSKAAPLYHLAKYIVSRQN 641
            + I ++       GL+ GQ+ DL SEGK D +L  L +IH+HKT  LLEA+              + R   YA+ IGL FQ++DD+LD+  +   LGK+ GKDL + KATYP   G+E + K AE L  +A +E+ YF+ +KA PL  +A +IV+R N
Sbjct:  144 KVIAQVAHSVTTSGLVGGQIIDLSSEGKSDTTLETLNFIHIHKTGALLEAAVLSGALLAGAKEKDMNRFLRYAQNIGLAFQIIDDVLDIISTEEKLGKSIGKDLKTQKATYPSFWGVEESIKQAELLVEEAKEEILYFD-NKAIPLIAIADFIVNRNN 300          
The following BLAST results are available for this feature:
BLAST of CX294591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
GGPPS_HEVBR4.147e-4358.86Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_SINAL4.585e-4257.50Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP1_ARATH5.988e-4257.50Geranylgeranyl pyrophosphate synthetase 1, chlorop... [more]
GGPPS_CATRO8.646e-4156.96Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_CAPAN5.604e-4057.32Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP4_ARATH1.526e-3753.13Geranylgeranyl pyrophosphate synthetase 4 OS=Arabi... [more]
GGPP3_ARATH7.574e-3753.13Geranylgeranyl pyrophosphate synthetase 3, chlorop... [more]
GGPP6_ARATH2.437e-3548.77Geranylgeranyl pyrophosphate synthetase 6, mitocho... [more]
GGPP2_ARATH1.337e-3350.96Geranylgeranyl pyrophosphate synthetase 2 OS=Arabi... [more]
CRTE_CYAPA1.870e-2741.77Geranylgeranyl pyrophosphate synthetase homolog OS... [more]

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Properties
Property NameValue
Genbank descriptionC05054G12SK FlavRip1 Citrus clementina cDNA clone C05054G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294591 ID=CX294591; Name=CX294591; organism=Citrus clementina; type=EST; length=643bp
TTTTTTTTTTTTTTTGGGTTCTCGAGAATTTTTTATTATAATATATTATT
TTACAAATTTATTAAATTATTAATTTAGCACCTTGCCCCAAATCAAATCG
AAACTAATCAAATCTATTGTGAAATCAAAGTTATTAATTTATAAATTTGT
TGAGATTTAACTGTAAATTAGTTCTGTCTACTAACAATATATTTAGCTAA
ATGGTACAATGGGGCAGCCTTTGAAACTTCAAAATAAGCAAGCTCTTTAG
TGGCTTGAGAGAATAACTCCTCTGCAAATTTCTTCGCATTCTCAATACCC
ATCAGCTTTGGATACGTGGCCTTATCACTCACCAAATCTTTTCCTGCCGT
CTTCCCTAACACTGTAGATGACTTAGTCACATCTAAAATATCATCCACCA
CTTGAAATAATAATCCTATACACCTTGCATAATTTCTAACTCTTTCTATT
TCAATCACATTTCCTCCTCCGATTATCACTCCGCAAACAACAGATGCCTC
TAAAAGCTTCGCGGTTTTGTGCACATGAATGTACTCCAATTCACTCAAAC
TCACATCCTTTCCTTCACTGTCAAGGTCAGTAACTTGTCCTTTCAGGAGC
CCTTCTGCTCCAAAGTGCGGACCCAGCTCCGTAATGGCTCGAA
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