CX294598

Overview
NameCX294598
Unique NameCX294598
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length623
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: AGD12_ARATH (ADP-ribosylation factor GTPase-activating protein AGD12 OS=Arabidopsis thaliana GN=AGD12 PE=1 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 4.253e-90
Identity = 163/213 (76.53%), Postives = 186/213 (87.32%), Query Frame = 3
Query:    3 DLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRI-----ASGKPSASLQSSFSRKIIDSFRSTNSSQKKDV-GMVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELM 623
            DLL Q DNR+CADCGAPDPKWASANIGVFICLKCCGVHRSLG+H+SKVLSVTLD+WSD+EVD+MIE+GGN+SAN+IYEAFIPEG SKPGPD+SH+ R +FIRSKYE QEFLKPSLRI     +S K  A L SS S+KI+DSFR+ +SSQ+  + GMVEFIGLLKV + KG N+AIRDMMSSDPYVVL LGQQ  Q+T+VKSNLNPVWNEELM
Sbjct:   20 DLLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWSDEEVDSMIEIGGNASANSIYEAFIPEGSSKPGPDASHDQRMRFIRSKYEHQEFLKPSLRITSVRGSSTKTPAFLSSSLSKKIVDSFRTNSSSQQPQLEGMVEFIGLLKVTIKKGTNMAIRDMMSSDPYVVLTLGQQKAQSTVVKSNLNPVWNEELM 232          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: AGD13_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD13 OS=Arabidopsis thaliana GN=AGD13 PE=2 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 8.867e-88
Identity = 160/212 (75.47%), Postives = 183/212 (86.32%), Query Frame = 3
Query:    3 DLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASG----KPSASLQSSFSRKIIDSFRSTNSSQKK-DVGMVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELM 623
            DLL Q DNR+CADCGA DPKWASANIGVFICLKCCGVHRSLGTH+SKVLSVTLD+WSD+EVD+MIE+GGN+SAN+IYEAF+P+  SKPGPD +H+ R +FIR+KYELQEFLKPSLRI SG    K SA L SS SRKI+DSFR+ +SSQ     GMVEFIGLLKV + KG NLAIRDMMSSDPYVVL LG+Q +QTT++ SNLNPVWN+ELM
Sbjct:   20 DLLNQPDNRVCADCGASDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDEWSDEEVDSMIEIGGNASANSIYEAFLPDTCSKPGPDVNHDQRMRFIRAKYELQEFLKPSLRITSGKGSTKSSAFLTSSLSRKIMDSFRTNSSSQTMFQEGMVEFIGLLKVTIKKGTNLAIRDMMSSDPYVVLNLGKQKLQTTVMNSNLNPVWNQELM 231          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: AGD11_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.292e-58
Identity = 113/228 (49.56%), Postives = 154/228 (67.54%), Query Frame = 3
Query:    6 LLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPS----------LRIASGKPS--ASLQSSFSRKIIDSFRSTNSSQKKD----------VGMVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELM 623
            LL Q  N+ CADCG+P+PKW S ++GVFIC+KC GVHRSLG H+SKVLSV LD+W+DD+VD ++  GGN++ N  +EA   +   KP PDS++E R+ FIR KYE  +F+ P            R  +  PS  ++   S   +I  +FR++   ++ D           GMVEF+GL+KV VVKG NLA+RD+M+SDPYV+L LGQQ+V+T ++K+NLNPVWNE LM
Sbjct:   53 LLKQPGNKYCADCGSPEPKWVSLSLGVFICIKCSGVHRSLGVHISKVLSVKLDEWTDDQVDMLVGYGGNTAVNERFEACNIDQSKKPKPDSTNEERNDFIRKKYEQHQFMDPKDGALCTYQQPSRTNTSPPSLCSASHRSTKNRIGHAFRNSWGRRESDHKGPKKSNSMAGMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGQQSVKTRVIKNNLNPVWNETLM 280          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: SMAP2_MOUSE (Stromal membrane-associated protein 2 OS=Mus musculus GN=Smap2 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.031e-27
Identity = 57/117 (48.72%), Postives = 82/117 (70.09%), Query Frame = 3
Query:    3 DLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRI 353
            +LLL+ DN+ CADC +  P+WAS NIGVFIC++C G+HR+LG H+S+V SV LD W+ +++  M E+ GN  AN +YEA++PE   +P  D + E    FIR KYE ++++  SL I
Sbjct:   18 NLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEM-GNGKANRLYEAYLPETFRRPQIDPAVE---GFIRDKYEKKKYMDRSLDI 130          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: SMAP2_HUMAN (Stromal membrane-associated protein 2 OS=Homo sapiens GN=SMAP2 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.031e-27
Identity = 57/117 (48.72%), Postives = 82/117 (70.09%), Query Frame = 3
Query:    3 DLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRI 353
            +LLL+ DN+ CADC +  P+WAS NIGVFIC++C G+HR+LG H+S+V SV LD W+ +++  M E+ GN  AN +YEA++PE   +P  D + E    FIR KYE ++++  SL I
Sbjct:   18 NLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEM-GNGKANRLYEAYLPETFRRPQIDPAVE---GFIRDKYEKKKYMDRSLDI 130          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: SMAP2_BOVIN (Stromal membrane-associated protein 2 OS=Bos taurus GN=SMAP2 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.031e-27
Identity = 57/117 (48.72%), Postives = 82/117 (70.09%), Query Frame = 3
Query:    3 DLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRI 353
            +LLL+ DN+ CADC +  P+WAS NIGVFIC++C G+HR+LG H+S+V SV LD W+ +++  M E+ GN  AN +YEA++PE   +P  D + E    FIR KYE ++++  SL I
Sbjct:   18 NLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEM-GNGKANRLYEAYLPETFRRPQIDHAVE---GFIRDKYEKKKYMDRSLDI 130          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: SMAP2_CHICK (Stromal membrane-associated protein 2 OS=Gallus gallus GN=SMAP2 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.297e-27
Identity = 56/116 (48.28%), Postives = 80/116 (68.97%), Query Frame = 3
Query:    6 LLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRI 353
            LL + +N+ CADC A  P+WAS NIGVFIC++C G+HR+LG H+S+V SV LD W+ +++  M E+ GN  AN +YEAF+PE   +P  D + E    FIR KYE ++++  S+ I
Sbjct:   19 LLSEEENKYCADCQAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEM-GNGKANRLYEAFLPENFRRPQTDQAVE---GFIRDKYEKKKYMDRSIDI 130          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: CEG1A_DROME (Centaurin-gamma-1A OS=Drosophila melanogaster GN=cenG1A PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 3.317e-26
Identity = 56/118 (47.46%), Postives = 81/118 (68.64%), Query Frame = 3
Query:   24 NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGKPSAS 377
            N  C DCGAP+P+WAS N+GV +C++C GVHR+LG+H+SKV S+ LDDW    +  M+ + GNS AN+++E+   + V KP   +S E + +++RSKYE +EFL P    +S  PS S
Sbjct:  714 NGFCVDCGAPNPEWASLNLGVLMCIECSGVHRNLGSHISKVRSLGLDDWPSPHLSVMLAI-GNSLANSVWESNTRQRV-KPTSQASREDKERWVRSKYEAKEFLTPLGNGSSAHPSPS 829          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: SMAP1_HUMAN (Stromal membrane-associated protein 1 OS=Homo sapiens GN=SMAP1 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.646e-25
Identity = 62/157 (39.49%), Postives = 95/157 (60.51%), Query Frame = 3
Query:    6 LLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFL-KPSLRI----ASGKP------SASLQSSFSRKIIDSFRSTNSSQKK 443
            LL + DN+ CADC A  P+WAS NIGVFIC++C G+HR+LG H+S+V SV LD W+ +++  M ++ GN+ A  +YEA +PE   +P  D + E    FIR KYE +++  K ++ I    +S  P      S SLQ++  +  ++  +     +KK
Sbjct:   24 LLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDM-GNTKARLLYEANLPENFRRPQTDQAVEF---FIRDKYEKKKYYDKNAIAITNISSSDAPLQPLVSSPSLQAAVDKNKLEKEKEKKKEEKK 176          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: SMAP1_MOUSE (Stromal membrane-associated protein 1 OS=Mus musculus GN=Smap1 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.667e-25
Identity = 52/109 (47.71%), Postives = 75/109 (68.81%), Query Frame = 3
Query:    6 LLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEF 332
            LL + DN+ CADC A  P+WAS NIGVFIC++C G+HR+LG H+S+V SV LD W+ +++  M ++ GN+ A  +YEA +PE   +P  D + E    FIR KYE +++
Sbjct:   24 LLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTPEQIQCMQDM-GNTKARLLYEANLPENFRRPQTDQAVEF---FIRDKYEKKKY 128          
The following BLAST results are available for this feature:
BLAST of CX294598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
AGD12_ARATH4.253e-9076.53ADP-ribosylation factor GTPase-activating protein ... [more]
AGD13_ARATH8.867e-8875.47Probable ADP-ribosylation factor GTPase-activating... [more]
AGD11_ARATH4.292e-5849.56Probable ADP-ribosylation factor GTPase-activating... [more]
SMAP2_MOUSE1.031e-2748.72Stromal membrane-associated protein 2 OS=Mus muscu... [more]
SMAP2_HUMAN1.031e-2748.72Stromal membrane-associated protein 2 OS=Homo sapi... [more]
SMAP2_BOVIN1.031e-2748.72Stromal membrane-associated protein 2 OS=Bos tauru... [more]
SMAP2_CHICK2.297e-2748.28Stromal membrane-associated protein 2 OS=Gallus ga... [more]
CEG1A_DROME3.317e-2647.46Centaurin-gamma-1A OS=Drosophila melanogaster GN=c... [more]
SMAP1_HUMAN1.646e-2539.49Stromal membrane-associated protein 1 OS=Homo sapi... [more]
SMAP1_MOUSE3.667e-2547.71Stromal membrane-associated protein 1 OS=Mus muscu... [more]

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Properties
Property NameValue
Genbank descriptionC05054H09SK FlavRip1 Citrus clementina cDNA clone C05054H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294598 ID=CX294598; Name=CX294598; organism=Citrus clementina; type=EST; length=623bp
AGGATTTATTGCTTCAACGGGATAATCGCATTTGTGCTGATTGTGGTGCT
CCAGATCCTAAATGGGCGTCAGCAAATATCGGAGTGTTTATATGCTTAAA
ATGTTGTGGCGTGCACAGAAGCCTCGGTACGCATGTCTCGAAGGTTTTGT
CTGTGACATTGGATGACTGGTCTGATGATGAAGTTGATGCCATGATTGAA
GTTGGAGGAAATTCATCTGCTAATGCAATTTATGAGGCTTTTATACCCGA
AGGTGTTTCAAAGCCTGGACCAGATTCCAGTCATGAGATACGTTCGAAGT
TTATCAGGTCTAAGTATGAACTCCAAGAATTTTTGAAACCTAGCTTGCGG
ATTGCATCAGGAAAGCCTTCTGCCTCTCTCCAATCAAGTTTTTCTCGAAA
AATTATAGATAGCTTTCGAAGTACAAACTCATCGCAGAAAAAAGACGTAG
GCATGGTAGAGTTTATCGGCTTATTGAAAGTCAAAGTGGTAAAAGGCATA
AATTTAGCTATCAGAGATATGATGTCAAGTGATCCTTACGTAGTTCTGCG
TCTTGGACAGCAGACCGTGCAAACGACTATAGTAAAGAGCAACTTGAATC
CAGTTTGGAATGAGGAGCTCATG
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