CX294599

Overview
NameCX294599
Unique NameCX294599
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length384
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1879 contig Ccv1_Contig1879:518..901. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294599 vs. ExPASy Swiss-Prot
Match: GL19_ARATH (Putative germin-like protein subfamily 1 member 9 OS=Arabidopsis thaliana GN=At5g38910 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.736e-18
Identity = 42/63 (66.67%), Postives = 50/63 (79.37%), Query Frame = 2
Query:    2 IHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFI 190
            IHFQ N+GK  A A++ L+SQ PG +TIADTVFG+NP I+P FL  AFQ+DPKIV DLQ KFI
Sbjct:  158 IHFQVNVGKYPAVAFAGLSSQNPGVITIADTVFGSNPQIDPSFLASAFQVDPKIVMDLQTKFI 220          
BLAST of CX294599 vs. ExPASy Swiss-Prot
Match: GL110_ARATH (Germin-like protein subfamily 1 member 10 OS=Arabidopsis thaliana GN=At5g38930 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.736e-18
Identity = 42/62 (67.74%), Postives = 51/62 (82.26%), Query Frame = 2
Query:    2 IHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 187
            IHFQ NIGK  A A++AL+SQ PG +TIA TVFGANP+INP+ L KAFQ+DP++V DLQ KF
Sbjct:  160 IHFQANIGKAPAVAFAALSSQNPGVITIAPTVFGANPAINPNILAKAFQVDPRVVMDLQTKF 221          
BLAST of CX294599 vs. ExPASy Swiss-Prot
Match: GL111_ARATH (Germin-like protein subfamily 1 member 11 OS=Arabidopsis thaliana GN=At5g38940 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.373e-18
Identity = 42/62 (67.74%), Postives = 51/62 (82.26%), Query Frame = 2
Query:    2 IHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 187
            IHFQ NIGK  A A++AL+SQ PG +TIA+TVFGANP+INP  L KAFQL+P++V DLQ KF
Sbjct:  160 IHFQANIGKAPAVAFAALSSQNPGVITIANTVFGANPAINPTILAKAFQLNPRVVMDLQTKF 221          
BLAST of CX294599 vs. ExPASy Swiss-Prot
Match: GL113_ARATH (Germin-like protein subfamily 1 member 13 OS=Arabidopsis thaliana GN=GLP6 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.203e-17
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 2
Query:    2 IHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFIN 193
            IHFQ NIGKT A A++ L+SQ  G +TIADTVFG+ P INPD L +AFQLD  IVKDL+ KF N
Sbjct:  159 IHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNIVKDLEAKFRN 222          
BLAST of CX294599 vs. ExPASy Swiss-Prot
Match: GL117_ARATH (Germin-like protein subfamily 1 member 17 OS=Arabidopsis thaliana GN=At5g39150 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.202e-16
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 2
Query:    2 IHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFIN 193
            IHFQ NIGKT A A++ L+SQ  G +TIADTVFG+ P INPD L +AFQLD  +VKDL+ KF N
Sbjct:  158 IHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNVVKDLEAKFKN 221          
BLAST of CX294599 vs. ExPASy Swiss-Prot
Match: GL115_ARATH (Germin-like protein subfamily 1 member 15 OS=Arabidopsis thaliana GN=At5g39120 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.202e-16
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 2
Query:    2 IHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFIN 193
            IHFQ NIGKT A A++ L+SQ  G +TIADTVFG+ P INPD L +AFQLD  +VKDL+ KF N
Sbjct:  158 IHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNVVKDLEAKFKN 221          
BLAST of CX294599 vs. ExPASy Swiss-Prot
Match: GL114_ARATH (Germin-like protein subfamily 1 member 14 OS=Arabidopsis thaliana GN=At5g39110 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.202e-16
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 2
Query:    2 IHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFIN 193
            IHFQ NIGKT A A++ L+SQ  G +TIADTVFG+ P INPD L +AFQLD  +VKDL+ KF N
Sbjct:  159 IHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNVVKDLEAKFKN 222          
BLAST of CX294599 vs. ExPASy Swiss-Prot
Match: GL119_ARATH (Germin-like protein subfamily 1 member 19 OS=Arabidopsis thaliana GN=At5g39180 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.965e-16
Identity = 40/64 (62.50%), Postives = 48/64 (75.00%), Query Frame = 2
Query:    2 IHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFIN 193
            IHFQ NIGKT A A++ L+SQ  G +TIAD VFG+ P INPD L +AFQLD  +VKDL+ KF N
Sbjct:  158 IHFQVNIGKTPAVAFAGLSSQNAGVITIADIVFGSTPPINPDILAQAFQLDVNVVKDLEAKFKN 221          
BLAST of CX294599 vs. ExPASy Swiss-Prot
Match: GL17_ARATH (Germin-like protein subfamily 1 member 7 OS=Arabidopsis thaliana GN=At3g05950 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.267e-15
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 2
Query:    2 IHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 187
            IHFQ N+G+TNA A++ L SQ PG +TIAD VFG+ PSI P+ L KAFQLD  +VK L+ +F
Sbjct:  160 IHFQVNVGRTNAVAFAGLGSQNPGTITIADAVFGSKPSIMPEILAKAFQLDVNVVKYLEARF 221          
BLAST of CX294599 vs. ExPASy Swiss-Prot
Match: GL116_ARATH (Germin-like protein subfamily 1 member 16 OS=Arabidopsis thaliana GN=At5g39130 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.919e-14
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 2
Query:    2 IHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 187
            IHFQ NIGK  A A++ L+SQ  G +TIA+TVFG+NP I P+ L +AFQLD  +VK+LQ KF
Sbjct:  158 IHFQLNIGKIPAIAFAGLSSQNAGVITIANTVFGSNPPIYPELLARAFQLDANVVKELQAKF 219          
The following BLAST results are available for this feature:
BLAST of CX294599 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
GL19_ARATH3.736e-1866.67Putative germin-like protein subfamily 1 member 9 ... [more]
GL110_ARATH3.736e-1867.74Germin-like protein subfamily 1 member 10 OS=Arabi... [more]
GL111_ARATH6.373e-1867.74Germin-like protein subfamily 1 member 11 OS=Arabi... [more]
GL113_ARATH9.203e-1765.63Germin-like protein subfamily 1 member 13 OS=Arabi... [more]
GL117_ARATH1.202e-1664.06Germin-like protein subfamily 1 member 17 OS=Arabi... [more]
GL115_ARATH1.202e-1664.06Germin-like protein subfamily 1 member 15 OS=Arabi... [more]
GL114_ARATH1.202e-1664.06Germin-like protein subfamily 1 member 14 OS=Arabi... [more]
GL119_ARATH5.965e-1662.50Germin-like protein subfamily 1 member 19 OS=Arabi... [more]
GL17_ARATH2.267e-1559.68Germin-like protein subfamily 1 member 7 OS=Arabid... [more]
GL116_ARATH1.919e-1459.68Germin-like protein subfamily 1 member 16 OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionC05054H10SK FlavRip1 Citrus clementina cDNA clone C05054H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294599 ID=CX294599; Name=CX294599; organism=Citrus clementina; type=EST; length=384bp
GATTCACTTCCAATTCAACATTGGAAAAACAAATGCAGCTGCCTATTCTG
CTCTAAACAGCCAATTCCCGGGTGAAGTTACCATAGCCGACACAGTCTTT
GGAGCCAATCCTTCAATCAATCCCGATTTTCTTGGCAAGGCATTCCAGTT
GGACCCAAAGATAGTGAAAGATCTTCAAAATAAGTTCATTAATGGCAATT
AGGAGAAGGAATTAATGAGCTTTAATATAAATGGCCTCTTCACTAGTGGC
TGTATTACTTTATCTCCAGATTATCATATCTTAATTAATGTAATAAAAGA
GGTCTCTCATGAACCTCTCTCCAGGCTGACTGTGGCCATGTAATAAACAT
AATTGTTATTGTTTTTAAAAAAAAAAAAAAAAAA
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