CX294601

Overview
NameCX294601
Unique NameCX294601
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294601_ssr564 microsatellite CX294601_ssr564:564..575. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15267 contig Ccv1_Contig15267:142..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294601 vs. ExPASy Swiss-Prot
Match: PSD12_PONAB (26S proteasome non-ATPase regulatory subunit 12 OS=Pongo abelii GN=PSMD12 PE=2 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 1.157e-43
Identity = 85/192 (44.27%), Postives = 130/192 (67.71%), Query Frame = 1
Query:    1 SKMEGKGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKERK 576
            +K+  +G L+  ++ LL+ EKQ R + D+  T + +  ++++C+EAK+W  LNE I+ LSK+R QLK            Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M K E++ FILEQ+RLCL  +DY+R QI+S+KI+ + F  + +++ K
Sbjct:   32 AKLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLK 223          

HSP 2 Score: 21.1718 bits (43), Expect = 1.157e-43
Identity = 8/16 (50.00%), Postives = 9/16 (56.25%), Query Frame = 2
Query:  650 YYELMIRYYSHNNDYL 697
            YY LMI+   H   YL
Sbjct:  226 YYNLMIQLDQHEGSYL 241          
BLAST of CX294601 vs. ExPASy Swiss-Prot
Match: PSD12_HUMAN (26S proteasome non-ATPase regulatory subunit 12 OS=Homo sapiens GN=PSMD12 PE=1 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 1.157e-43
Identity = 85/192 (44.27%), Postives = 130/192 (67.71%), Query Frame = 1
Query:    1 SKMEGKGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKERK 576
            +K+  +G L+  ++ LL+ EKQ R + D+  T + +  ++++C+EAK+W  LNE I+ LSK+R QLK            Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M K E++ FILEQ+RLCL  +DY+R QI+S+KI+ + F  + +++ K
Sbjct:   32 AKLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLK 223          

HSP 2 Score: 21.1718 bits (43), Expect = 1.157e-43
Identity = 8/16 (50.00%), Postives = 9/16 (56.25%), Query Frame = 2
Query:  650 YYELMIRYYSHNNDYL 697
            YY LMI+   H   YL
Sbjct:  226 YYNLMIQLDQHEGSYL 241          
BLAST of CX294601 vs. ExPASy Swiss-Prot
Match: PSD12_BOVIN (26S proteasome non-ATPase regulatory subunit 12 OS=Bos taurus GN=PSMD12 PE=2 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 1.157e-43
Identity = 86/191 (45.03%), Postives = 129/191 (67.54%), Query Frame = 1
Query:    4 KMEGKGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKERK 576
            K+  +G L+  ++ LL+ EKQ R + D+  T + +  I+++C+EAK+W  LNE I+ LSK+R QLK            Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M K E++ FILEQ+RLCL  +DY+R QI+S+KI+ + F  + +++ K
Sbjct:   33 KLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAIVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLK 223          

HSP 2 Score: 21.1718 bits (43), Expect = 1.157e-43
Identity = 8/16 (50.00%), Postives = 9/16 (56.25%), Query Frame = 2
Query:  650 YYELMIRYYSHNNDYL 697
            YY LMI+   H   YL
Sbjct:  226 YYNLMIQLDQHEGSYL 241          
BLAST of CX294601 vs. ExPASy Swiss-Prot
Match: PSD12_MOUSE (26S proteasome non-ATPase regulatory subunit 12 OS=Mus musculus GN=Psmd12 PE=2 SV=3)

HSP 1 Score: 169.474 bits (428), Expect = 6.134e-42
Identity = 83/191 (43.46%), Postives = 126/191 (65.97%), Query Frame = 1
Query:    4 KMEGKGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKERK 576
            K+  +G L+  ++ LL+ EKQ R + D+  T + +  ++++C+EAK+W   NE I+ LSK+R QLK            Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M K E++ FILEQ+RLCL  +DY+R QI+S+KI+ +    + ++  K
Sbjct:   33 KLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLHNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPVKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFSQEENTENMK 223          

HSP 2 Score: 21.1718 bits (43), Expect = 6.134e-42
Identity = 8/16 (50.00%), Postives = 9/16 (56.25%), Query Frame = 2
Query:  650 YYELMIRYYSHNNDYL 697
            YY LMI+   H   YL
Sbjct:  226 YYNLMIQLDQHEGSYL 241          
BLAST of CX294601 vs. ExPASy Swiss-Prot
Match: PSD12_DICDI (26S proteasome non-ATPase regulatory subunit 12 OS=Dictyostelium discoideum GN=psmD12 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 5.098e-41
Identity = 80/186 (43.01%), Postives = 123/186 (66.13%), Query Frame = 1
Query:   19 GNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKERK 576
            G L   ++ LL TEKQ R + D   T K   EI++LC+EA     +NE++V LSK+RGQL+            Y+DQ  D+  ++ELI TL ++S GKI+VE ERARL K L+KIKE++G IA AA ++Q++ VET+G M K EKI F ++Q+R+C++ +D++RAQ++  K++ +    D +++ K
Sbjct:   39 GKLIEAIENLLITEKQCRQAEDSPSTSKIAAEIIKLCYEAGRLDLVNEKLVLLSKRRGQLRPAIKAIVQESMVYVDQITDMKQKLELIDTLRTISDGKIFVENERARLTKTLSKIKEDEGDIASAAKILQDLQVETYGTMEKREKITFFIDQMRICMNNKDFIRAQLIGNKVNRKTLAEDENQDLK 224          

HSP 2 Score: 25.409 bits (54), Expect = 5.098e-41
Identity = 8/16 (50.00%), Postives = 14/16 (87.50%), Query Frame = 2
Query:  650 YYELMIRYYSHNNDYL 697
            Y++ MIRY+SH+ +Y+
Sbjct:  227 YFKQMIRYFSHSANYI 242          
BLAST of CX294601 vs. ExPASy Swiss-Prot
Match: RPN5_YEAST (26S proteasome regulatory subunit RPN5 OS=Saccharomyces cerevisiae GN=RPN5 PE=1 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 1.936e-33
Identity = 77/180 (42.78%), Postives = 115/180 (63.89%), Query Frame = 1
Query:   16 KGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTP--DLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVF 549
            + +  + +DQLL  EK+ R + D+A +K+ + +I+ L      W  LNEQ+  LSKK GQLK            Y+  +   DL+TRI +I+T+  V+  KI+VE+ERAR+ K L +IK+E+G I EAAD++ E+ VET+G+M  +EKI FILEQ+ L + + DY +A +LSRKI  + F
Sbjct:   29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTF 208          

HSP 2 Score: 20.4014 bits (41), Expect = 1.936e-33
Identity = 6/16 (37.50%), Postives = 10/16 (62.50%), Query Frame = 2
Query:  650 YYELMIRYYSHNNDYL 697
            YY L+++   H  +YL
Sbjct:  220 YYNLLVKISLHKREYL 235          
BLAST of CX294601 vs. ExPASy Swiss-Prot
Match: RPN5_SCHPO (26S proteasome regulatory subunit rpn5 OS=Schizosaccharomyces pombe GN=rpn5a PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.524e-33
Identity = 78/185 (42.16%), Postives = 116/185 (62.70%), Query Frame = 1
Query:   22 NLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKERK 576
            +++A +++LL  EKQ+R + D +   K +  I  L F A D++ LNEQ+V+L KK GQLK            Y+    DL T+I LI+TL +++ GKIYVE+ERARL + L++IKEEQG I  A +++    VET+G+    EK+AFIL+QVRL L R DY  A   ++KI+ + F+ +  +  K
Sbjct:   27 DIDANLEKLLIFEKQVRQASDTSTNTKVLIYIADLLFRAGDFQGLNEQLVSLFKKHGQLKQSMTSLVQHVMTYLPGIDDLKTKINLIETLRTITDGKIYVEVERARLTQLLSQIKEEQGDIKSAQEILCNEPVETYGSFDLKEKVAFILDQVRLFLLRSDYYMASTYTKKINVKFFEKEDVQSLK 211          
The following BLAST results are available for this feature:
BLAST of CX294601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PSD12_PONAB1.157e-4344.2726S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_HUMAN1.157e-4344.2726S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_BOVIN1.157e-4345.0326S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_MOUSE6.134e-4243.4626S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_DICDI5.098e-4143.0126S proteasome non-ATPase regulatory subunit 12 OS... [more]
RPN5_YEAST1.936e-3342.7826S proteasome regulatory subunit RPN5 OS=Saccharo... [more]
RPN5_SCHPO3.524e-3342.1626S proteasome regulatory subunit rpn5 OS=Schizosa... [more]
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Properties
Property NameValue
Genbank descriptionC05055A02SK FlavSen1 Citrus clementina cDNA clone C05055A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294601 ID=CX294601; Name=CX294601; organism=Citrus clementina; type=EST; length=701bp
TCGAAGATGGAGGGTAAAGGCAATTTGGAGGCGCAAGTAGATCAGCTTTT
GAATACCGAGAAGCAGATGAGATTATCCGGTGACGTGGCCGGCACCAAGA
AGGCGGTGACGGAAATTTTGCAGCTTTGCTTTGAAGCTAAAGACTGGAAG
ACTCTCAATGAACAGATTGTTAATCTTTCCAAGAAACGCGGTCAACTCAA
GCAGGCTGTAACTGCAATGGTCCAGCAAGCAATGCAGTACATCGATCAGA
CGCCAGATCTTGATACTCGTATAGAGCTCATCAAAACACTAAATAGTGTC
TCTGCAGGGAAGATATATGTTGAAATTGAGAGGGCAAGGTTGATTAAAAA
ACTTGCAAAGATTAAGGAAGAACAAGGGCTTATAGCGGAAGCTGCAGATC
TGATGCAAGAAGTGGCTGTGGAGACATTTGGTGCTATGGCAAAAACTGAG
AAAATCGCCTTCATTCTTGAACAAGTCCGTCTGTGCCTAGACCGCCAAGA
TTATGTCCGTGCACAAATTCTTTCAAGGAAGATTAGTCCAAGAGTTTTTG
ATGCTGATCCTTCGAAAGAAAGAAAAAGCCAAAAGAAGGTGANCATGTTG
TTGAAGAGGCTCCTGCTGATATACCATCATTATTGGAATTGAAAGAATCT
ATTATGAACTAATGATTAGGTATTACTCACACAACAATGATTACCTTTGA
A
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