CX294609

Overview
NameCX294609
Unique NameCX294609
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length593
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294609_ssr527 microsatellite CX294609_ssr527:527..538. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6814 contig Ccv1_Contig6814:656..1248. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294609 vs. ExPASy Swiss-Prot
Match: WRK33_ARATH (Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 5.673e-33
Identity = 78/161 (48.45%), Postives = 90/161 (55.90%), Query Frame = 3
Query:  135 RESKKSDDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKPXXXXXXXXXXXXXXXXXXXT------QHSNEIQDQSYATHGSGQMDSAATPENSSISVGDDDVXXXXXXXXXXXXXXXXXXXFDED---EPEAKRW 590
            RE +K +DGYNWRKYGQKQVKGSENPRSYYKCTFP+CPTKKKVERSL+GQITEIVYKGSHNHPKP                          Q S++  + + + H S           +S SVGDD+                     +ED   EPEAKRW
Sbjct:  178 REQRKGEDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLEGQITEIVYKGSHNHPKPQSTRRSSSSSSTFHSAVYNASLDHNRQASSDQPNSNNSFHQSDSFGMQQEDNTTSDSVGDDEFEQGSSIVSRD----------EEDCGSEPEAKRW 328          

HSP 2 Score: 80.1073 bits (196), Expect = 9.100e-15
Identity = 37/60 (61.67%), Postives = 41/60 (68.33%), Query Frame = 3
Query:  153 DDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVER-SLDGQITEIVYKGSHNHPKP 329
            DDGY WRKYGQK VKG+ NPRSYYKCT   CP +K VER S D +     Y+G HNH  P
Sbjct:  362 DDGYRWRKYGQKVVKGNPNPRSYYKCTTIGCPVRKHVERASHDMRAVITTYEGKHNHDVP 421          
BLAST of CX294609 vs. ExPASy Swiss-Prot
Match: WRKY4_ARATH (Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 8.478e-29
Identity = 54/73 (73.97%), Postives = 60/73 (82.19%), Query Frame = 3
Query:  111 QHQQSQPIRESKKSDDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKP 329
            +H+  QP+   K +DDGYNWRKYGQKQVKGSE PRSYYKCT P CP KKKVERSLDGQ+TEI+YKG HNH  P
Sbjct:  215 EHRSQQPLNVDKPADDGYNWRKYGQKQVKGSEFPRSYYKCTNPGCPVKKKVERSLDGQVTEIIYKGQHNHEPP 287          

HSP 2 Score: 77.7962 bits (190), Expect = 4.516e-14
Identity = 35/60 (58.33%), Postives = 40/60 (66.67%), Query Frame = 3
Query:  153 DDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVER-SLDGQITEIVYKGSHNHPKP 329
            DDGY WRKYGQK VKG+  PRSYYKCT P C  +K VER + D +     Y+G HNH  P
Sbjct:  409 DDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 468          
BLAST of CX294609 vs. ExPASy Swiss-Prot
Match: WRKY3_ARATH (Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.224e-27
Identity = 54/74 (72.97%), Postives = 62/74 (83.78%), Query Frame = 3
Query:  108 YQHQQSQPIRESKKSDDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKP 329
            ++H+ SQP    K +DDGYNWRKYGQKQVKGS+ PRSYYKCT P+CP KKKVERSLDGQ+TEI+YKG HNH  P
Sbjct:  236 FEHR-SQPQNADKPADDGYNWRKYGQKQVKGSDFPRSYYKCTHPACPVKKKVERSLDGQVTEIIYKGQHNHELP 308          

HSP 2 Score: 77.7962 bits (190), Expect = 4.516e-14
Identity = 35/60 (58.33%), Postives = 40/60 (66.67%), Query Frame = 3
Query:  153 DDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVER-SLDGQITEIVYKGSHNHPKP 329
            DDGY WRKYGQK VKG+  PRSYYKCT P C  +K VER + D +     Y+G HNH  P
Sbjct:  415 DDGYRWRKYGQKVVKGNPYPRSYYKCTTPDCGVRKHVERAATDPKAVVTTYEGKHNHDVP 474          
BLAST of CX294609 vs. ExPASy Swiss-Prot
Match: WRK26_ARATH (Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 3.015e-26
Identity = 54/71 (76.06%), Postives = 62/71 (87.32%), Query Frame = 3
Query:  120 QSQPIRESKKSDDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSL-DGQITEIVYKGSHNHPKP 329
            +S+ +  +K SDDGYNWRKYGQKQVKGSENPRSY+KCT+P+C TKKKVE SL  GQ+ EIVYKGSHNHPKP
Sbjct:  106 KSEIMSSNKTSDDGYNWRKYGQKQVKGSENPRSYFKCTYPNCLTKKKVETSLVKGQMIEIVYKGSHNHPKP 176          

HSP 2 Score: 77.0258 bits (188), Expect = 7.704e-14
Identity = 35/60 (58.33%), Postives = 40/60 (66.67%), Query Frame = 3
Query:  153 DDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSL-DGQITEIVYKGSHNHPKP 329
            DDGY WRKYGQK VKG+ NPRSYYKCTF  C  +K VER+  D +     Y+G H H  P
Sbjct:  234 DDGYRWRKYGQKVVKGNPNPRSYYKCTFTGCFVRKHVERAFQDPKSVITTYEGKHKHQIP 293          
BLAST of CX294609 vs. ExPASy Swiss-Prot
Match: WRK44_ARATH (WRKY transcription factor 44 OS=Arabidopsis thaliana GN=WRKY44 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 9.700e-25
Identity = 49/70 (70.00%), Postives = 57/70 (81.43%), Query Frame = 3
Query:  120 QSQPIRESKKSDDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKP 329
            +S+     + S DGYNWRKYGQKQVKGSE PRSYYKCT P CP KKKVERS++GQ++EIVY+G HNH KP
Sbjct:  154 ESETSTGDRSSVDGYNWRKYGQKQVKGSECPRSYYKCTHPKCPVKKKVERSVEGQVSEIVYQGEHNHSKP 223          

HSP 2 Score: 69.707 bits (169), Expect = 1.230e-11
Identity = 34/67 (50.75%), Postives = 42/67 (62.69%), Query Frame = 3
Query:  123 SQPIRESKKSDDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEI-VYKGSHNH 320
            SQ   ES   +DG+ WRKYGQK V G+  PRSYY+CT  +C  +K VER+ D     I  Y+G HNH
Sbjct:  339 SQGSVESDSLEDGFRWRKYGQKVVGGNAYPRSYYRCTSANCRARKHVERASDDPRAFITTYEGKHNH 405          
BLAST of CX294609 vs. ExPASy Swiss-Prot
Match: WRK25_ARATH (Probable WRKY transcription factor 25 OS=Arabidopsis thaliana GN=WRKY25 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.814e-24
Identity = 49/77 (63.64%), Postives = 58/77 (75.32%), Query Frame = 3
Query:   99 FGNYQHQQSQPIRESKKSDDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKP 329
            FG  +  +      S+ S+DGY WRKYGQKQVK SENPRSY+KCT+P C +KK VE + DGQITEI+YKG HNHPKP
Sbjct:  148 FGTERQIKIPAYMVSRNSNDGYGWRKYGQKQVKKSENPRSYFKCTYPDCVSKKIVETASDGQITEIIYKGGHNHPKP 224          

HSP 2 Score: 78.9518 bits (193), Expect = 2.027e-14
Identity = 36/59 (61.02%), Postives = 41/59 (69.49%), Query Frame = 3
Query:  156 DGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERS-LDGQITEIVYKGSHNHPKP 329
            DG+ WRKYGQK VKG+ NPRSYYKCTF  C  KK+VERS  D +     Y+G HNH  P
Sbjct:  329 DGFRWRKYGQKVVKGNTNPRSYYKCTFQGCGVKKQVERSAADERAVLTTYEGRHNHDIP 387          
BLAST of CX294609 vs. ExPASy Swiss-Prot
Match: WRK19_ARATH (Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.072e-23
Identity = 46/73 (63.01%), Postives = 57/73 (78.08%), Query Frame = 3
Query:  111 QHQQSQPIRESKKSDDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKP 329
            +H   QP+   K+ +DGYNW+KYGQK+VKGS+ P SYYKCT+  CP+K+KVERSLDGQ+ EIVYK  HNH  P
Sbjct:  454 EHMSQQPLNVDKQVNDGYNWQKYGQKKVKGSKFPLSYYKCTYLGCPSKRKVERSLDGQVAEIVYKDRHNHEPP 526          
BLAST of CX294609 vs. ExPASy Swiss-Prot
Match: WRK58_ARATH (Probable WRKY transcription factor 58 OS=Arabidopsis thaliana GN=WRKY58 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.389e-23
Identity = 46/75 (61.33%), Postives = 56/75 (74.67%), Query Frame = 3
Query:  105 NYQHQQSQPIRESKKSDDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKP 329
            N  ++    +   K +DDGYNWRKYGQK +KG E PRSYYKCT  +CP KKKVERS DGQIT+I+YKG H+H +P
Sbjct:  151 NNNNRSYNVVNVDKPADDGYNWRKYGQKPIKGCEYPRSYYKCTHVNCPVKKKVERSSDGQITQIIYKGQHDHERP 225          

HSP 2 Score: 81.2629 bits (199), Expect = 4.085e-15
Identity = 36/60 (60.00%), Postives = 42/60 (70.00%), Query Frame = 3
Query:  153 DDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVER-SLDGQITEIVYKGSHNHPKP 329
            DDGY WRKYGQK VKG+ +PRSYYKCT P+C  +K VER S D +     Y+G HNH  P
Sbjct:  306 DDGYRWRKYGQKVVKGNPHPRSYYKCTTPNCTVRKHVERASTDAKAVITTYEGKHNHDVP 365          
BLAST of CX294609 vs. ExPASy Swiss-Prot
Match: WRK20_ARATH (Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.120e-23
Identity = 46/60 (76.67%), Postives = 52/60 (86.67%), Query Frame = 3
Query:  150 SDDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKP 329
            +DDGYNWRKYGQK VKGSE PRSYYKCT P+C  KK  ERS DGQIT+I+YKG+H+HPKP
Sbjct:  210 ADDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTHDHPKP 269          

HSP 2 Score: 78.5666 bits (192), Expect = 2.648e-14
Identity = 37/69 (53.62%), Postives = 44/69 (63.77%), Query Frame = 3
Query:  126 QPIRESKKSDDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVER-SLDGQITEIVYKGSHNHPKP 329
            Q + E    DDGY WRKYGQK V+G+ NPRSYYKCT   CP +K VER S D +     Y+G H+H  P
Sbjct:  372 QTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTAHGCPVRKHVERASHDPKAVITTYEGKHDHDVP 440          
BLAST of CX294609 vs. ExPASy Swiss-Prot
Match: WRKY2_ARATH (Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.186e-22
Identity = 46/60 (76.67%), Postives = 52/60 (86.67%), Query Frame = 3
Query:  150 SDDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHPKP 329
            ++DGYNWRKYGQK VKGSE PRSYYKCT P+C  KKKVERS +G ITEI+YKG+HNH KP
Sbjct:  272 AEDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCQVKKKVERSREGHITEIIYKGAHNHLKP 331          

HSP 2 Score: 80.1073 bits (196), Expect = 9.100e-15
Identity = 37/60 (61.67%), Postives = 41/60 (68.33%), Query Frame = 3
Query:  153 DDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVER-SLDGQITEIVYKGSHNHPKP 329
            DDGY WRKYGQK VKG+ NPRSYYKCT P C  +K VER S D +     Y+G HNH  P
Sbjct:  487 DDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHNHDVP 546          
The following BLAST results are available for this feature:
BLAST of CX294609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
WRK33_ARATH5.673e-3348.45Probable WRKY transcription factor 33 OS=Arabidops... [more]
WRKY4_ARATH8.478e-2973.97Probable WRKY transcription factor 4 OS=Arabidopsi... [more]
WRKY3_ARATH1.224e-2772.97Probable WRKY transcription factor 3 OS=Arabidopsi... [more]
WRK26_ARATH3.015e-2676.06Probable WRKY transcription factor 26 OS=Arabidops... [more]
WRK44_ARATH9.700e-2570.00WRKY transcription factor 44 OS=Arabidopsis thalia... [more]
WRK25_ARATH4.814e-2463.64Probable WRKY transcription factor 25 OS=Arabidops... [more]
WRK19_ARATH1.072e-2363.01Probable WRKY transcription factor 19 OS=Arabidops... [more]
WRK58_ARATH2.389e-2361.33Probable WRKY transcription factor 58 OS=Arabidops... [more]
WRK20_ARATH3.120e-2376.67Probable WRKY transcription factor 20 OS=Arabidops... [more]
WRKY2_ARATH1.186e-2276.67Probable WRKY transcription factor 2 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionC05055A10SK FlavSen1 Citrus clementina cDNA clone C05055A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294609 ID=CX294609; Name=CX294609; organism=Citrus clementina; type=EST; length=593bp
ATTATCAGGAATCCACAAAGCAAGATGTGAAATTGGCACAGAGTTTTTCA
ACAACTTTGCAAAGTAACAATCAGAGCAACAGTGGGTTCCAATCAGATTT
TGGAAACTACCAACACCAACAATCTCAGCCCATTAGAGAGAGTAAAAAAT
CTGATGATGGATATAATTGGAGAAAATATGGGCAAAAACAAGTCAAAGGA
AGTGAAAATCCAAGAAGTTATTACAAGTGCACATTCCCAAGTTGCCCAAC
AAAGAAGAAAGTTGAAAGGTCATTGGATGGGCAGATAACTGAGATTGTTT
ACAAGGGCAGTCACAATCATCCCAAGCCTCAATCTACAAGGAGATCATCG
TCATCCTCGGTTAATTCTAATGCCATCCAAGCATCTACTCAACATTCAAA
TGAAATACAAGATCAGTCATATGCTACACATGGAAGTGGACAGATGGATT
CAGCTGCAACCCCAGAGAATTCTTCGATATCGGTGGGAGATGATGACGTT
GATCAGGGTTCACAGAAGAGTAAATCAGGAGGAGGAGGAGCTGNAGGAGG
AGATGATTTTGATGAAGATGAACCTGAGGCCAAAAGATGGTAG
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