CX294718

Overview
NameCX294718
Unique NameCX294718
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294718_ssr402 microsatellite CX294718_ssr402:402..413. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13960 contig Ccv1_Contig13960:8..679. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX294718 vs. ExPASy Swiss-Prot
Match: WRK11_ARATH (Probable WRKY transcription factor 11 OS=Arabidopsis thaliana GN=WRKY11 PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 9.951e-35
Identity = 87/181 (48.07%), Postives = 102/181 (56.35%), Query Frame = 3 
Query:  129 MAVELMGFPKRMMEDQTAIQEAATQGIKSMEHLIRLMSHHQSSNH-VDCSDLTDLTVSKFKKVISLLNRTGHARFRRGPVHXXXXXXXXXXXXXXXXGNSPHXXXXXXXXXXXXXXXXXXXXSYVQSQPHSLTLDFTKPSLFSGNVKSTELEXXXXXXXXXXXXXXXXXAITGDGSVSNGK 668
            MAV+LM FPK  ++DQTAIQEAA+QG++SMEHLIR++S+     H VDCS++TD TVSKFK VISLLNRTGHARFRRGPVH                   P                       +   P S+TLDF+KPS+F    KS ELE                 AITGDGSVSNGK
Sbjct:    1 MAVDLMRFPK--IDDQTAIQEAASQGLQSMEHLIRVLSNRPEQQHNVDCSEITDFTVSKFKTVISLLNRTGHARFRRGPVHSTSSAASQKLQSQIVKNTQPE----------APIVRTTTNHPQIVPPPSSVTLDFSKPSIFGTKAKSAELEFSKENFSVSLNSSFMSSAITGDGSVSNGK 169
[Close]
BLAST of CX294718 vs. ExPASy Swiss-Prot
Match: WRK17_ARATH (Probable WRKY transcription factor 17 OS=Arabidopsis thaliana GN=WRKY17 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.877e-33
Identity = 85/180 (47.22%), Postives = 104/180 (57.78%), Query Frame = 3 
Query:  129 MAVELMGFPKRMMEDQTAIQEAATQGIKSMEHLIRLMSHHQSSNHVDCSDLTDLTVSKFKKVISLLNRTGHARFRRGPVHXXXXXXXXXXXXXXXXGNSPHXXXXXXXXXXXXXXXXXXXXSYVQSQPHSLTLDFTKPSLFSGNVKSTE-LEXXXXXXXXXXXXXXXXXAITGDGSVSNG 665
            M V++M  PK  MEDQTAIQEAA+QG+KSMEHLIR++S+     +VDCS++TD TVSKFKKVISLLNR+GHARFRRGPVH                 +S                      S+VQ+   S+TLDFT+PS+F    KS+E +E                 AITGDGSVS G
Sbjct:    1 MTVDIMRLPK--MEDQTAIQEAASQGLKSMEHLIRVLSNRPEERNVDCSEITDFTVSKFKKVISLLNRSGHARFRRGPVHSPP--------------SSSVPPPVKVTTPAPTQISAPAPVSFVQANQQSVTLDFTRPSVFGAKTKSSEVVEFAKESFSVSSNSSFMSSAITGDGSVSKG 164
The following BLAST results are available for this feature:
BLAST of CX294718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
WRK11_ARATH9.951e-3548.07Probable WRKY transcription factor 11 OS=Arabidops... [more]
WRK17_ARATH1.877e-3347.22Probable WRKY transcription factor 17 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionC05055B04SK FlavSen1 Citrus clementina cDNA clone C05055B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294718 ID=CX294718; Name=CX294718; organism=Citrus clementina; type=EST; length=669bp
AGAGAGCCTCCACCCTCGCAGCCTCAGCCTTAAGTTTTACTTTTTCAAAG
GGTTTCGTCGAATGACATCTTGAGGCTTTTCCAAATTGCTCTCCTTTGGT
AGCAGAAACTTTTTCGTTTTTCTAAATCATGGCGGTGGAGCTGATGGGAT
TTCCAAAAAGGATGATGGAAGATCAGACGGCGATACAAGAAGCTGCAACG
CAAGGGATCAAAAGCATGGAGCACCTGATCCGTCTCATGTCTCATCACCA
ATCCTCGAATCACGTTGACTGCTCGGACCTCACCGATCTCACCGTCTCTA
AGTTCAAAAAAGTCATTTCCCTGCTCAACCGAACCGGTCACGCCCGGTTC
AGGCGCGGGCCGGTTCACTCTTCGCCTTCATCTTCATCTGCATCTGCGCC
AGCCGCCGCCGCCTCAGGCAACTCTCCGCACACACAGACCTTAACTCTTA
CTCCGCCTGCTCCTACGATGGCTGTCGCTCCCTCTACGGCGAGTTACGTC
CAGTCACAGCCGCACAGTCTGACTCTTGATTTTACAAAACCTAGTTTGTT
TAGCGGAAACGTCAAGAGCACTGAGCTCGAGTTTTCCAAAGACAGCTTCT
GTGTGTCGTCGAACTCGTCCTTCATGTCCTCTGCTATCACCGGAGACGGC
AGCGTTTCGAACGGGAAGC
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