CX294727

Overview
NameCX294727
Unique NameCX294727
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length453
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: GOX2_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 OS=Arabidopsis thaliana GN=At3g14420 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 7.761e-50
Identity = 96/113 (84.96%), Postives = 104/113 (92.04%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWDTPGAVARL 341
            GARQLDYVPAT+ ALEEVV+A +GR+PVFLDGGVRRGTDVFKALALGASG+F+GRPV FSLA +GEAGVRKVLQMLRDEFELTMALSGCRSLKEI+RNHI T WDTP   ARL
Sbjct:  255 GARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDTPRPSARL 367          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: GOX1_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 OS=Arabidopsis thaliana GN=At3g14415 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 2.949e-49
Identity = 95/113 (84.07%), Postives = 104/113 (92.04%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWDTPGAVARL 341
            GARQLDYVPAT+ ALEEVV+A +GRVPVFLDGGVRRGTDVFKALALGASG+F+GRPV F+LA +GEAGV+KVLQMLRDEFELTMALSGCRSL EITRNHIVT WDTP  + RL
Sbjct:  255 GARQLDYVPATISALEEVVKATQGRVPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFALAAEGEAGVKKVLQMLRDEFELTMALSGCRSLSEITRNHIVTEWDTPRHLPRL 367          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: GOX_SPIOL (Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 4.259e-48
Identity = 95/115 (82.61%), Postives = 106/115 (92.17%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWDTPG--AVARL 341
            GARQLDYVPAT+MALEEVV+AA+GR+PVFLDGGVRRGTDVFKALALGA+GVF+GRPV FSLA +GEAGV+KVLQM+RDEFELTMALSGCRSLKEI+R+HI   WD P   AVARL
Sbjct:  255 GARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWDGPSSRAVARL 369          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: HAOX1_HUMAN (Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.288e-28
Identity = 61/97 (62.89%), Postives = 78/97 (80.41%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITR 293
            GARQLD VPAT+  L E+V+A +G+V VFLDGGVR+GTDV KALALGA  VFVGRP+ + LA  GE GV+ VL++L++EF L MALSGC+++K I +
Sbjct:  261 GARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDK 357          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: HAOX1_MOUSE (Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.682e-28
Identity = 61/97 (62.89%), Postives = 78/97 (80.41%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITR 293
            GARQLD VPAT+  L E+V+A +G+V VFLDGGVR+GTDV KALALGA  VFVGRP+ + LA  GE GV+ VL++L++EF L MALSGC+++K I +
Sbjct:  261 GARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIIWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDK 357          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: HAOX2_BOVIN (Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.686e-26
Identity = 59/100 (59.00%), Postives = 76/100 (76.00%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 302
            G RQLD VPA++ AL EVV A KG+V V+LDGG+R G DV KALALGA  VFVGRP+ + LA  GE GV++VL +L++EF  +M L+GCRS+ EI ++ I
Sbjct:  249 GGRQLDEVPASIDALTEVVAAVKGKVEVYLDGGIRTGNDVLKALALGAKCVFVGRPILWGLAYKGEHGVKEVLDILKNEFHTSMTLTGCRSVAEINQDLI 348          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: HAOX2_HUMAN (Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.021e-25
Identity = 58/98 (59.18%), Postives = 74/98 (75.51%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRN 296
            G RQLD V A++ AL EVV A KG++ V+LDGGVR G DV KALALGA  +F+GRP+ + LA  GE GV++VL +L +EF  +MAL+GCRS+ EI RN
Sbjct:  247 GGRQLDEVLASIDALTEVVAAVKGKIEVYLDGGVRTGNDVLKALALGAKCIFLGRPILWGLACKGEHGVKEVLNILTNEFHTSMALTGCRSVAEINRN 344          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: HAOX2_MOUSE (Hydroxyacid oxidase 2 OS=Mus musculus GN=Hao2 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 8.641e-25
Identity = 55/96 (57.29%), Postives = 72/96 (75.00%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEIT 290
            G RQLD VPA++ AL EVV A  G++ V++DGGVR G DV KALALGA  +F+GRP+ + LA  GE GV++VL +L++E    MALSGCRS+ EI+
Sbjct:  249 GGRQLDEVPASIDALREVVAAVNGKIEVYMDGGVRTGNDVLKALALGARCIFLGRPIIWGLACKGEDGVKEVLDILKEELHTCMALSGCRSVAEIS 344          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: HAOX2_RAT (Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 3.630e-23
Identity = 54/96 (56.25%), Postives = 70/96 (72.92%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEIT 290
            G RQLD V A++ AL EVV A KG++ V++DGGVR GTDV KALALGA  +F+GRP+ + LA  GE GV++VL +L  E    M LSGC+S+ EI+
Sbjct:  249 GGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEIS 344          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: HAOX_DICDI (Hydroxyacid oxidase OS=Dictyostelium discoideum GN=haox PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.525e-21
Identity = 50/105 (47.62%), Postives = 70/105 (66.67%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWD 317
            G RQLD  P+T+  L  + +  +GRVP+ LDGG+RRGTDV KALA GA+ V +GRP+ + L+  G+ GV KVL +L  E +L MAL+G  ++ +I  + I   WD
Sbjct:  280 GGRQLDTCPSTIEVLPYISKVVRGRVPLILDGGIRRGTDVLKALAFGANAVCIGRPIIWGLSTGGKDGVLKVLNLLNSELQLAMALTGITNISDINNSII---WD 381          
The following BLAST results are available for this feature:
BLAST of CX294727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
GOX2_ARATH7.761e-5084.96Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 ... [more]
GOX1_ARATH2.949e-4984.07Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 ... [more]
GOX_SPIOL4.259e-4882.61Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia... [more]
HAOX1_HUMAN1.288e-2862.89Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1... [more]
HAOX1_MOUSE1.682e-2862.89Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2... [more]
HAOX2_BOVIN2.686e-2659.00Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 S... [more]
HAOX2_HUMAN1.021e-2559.18Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2... [more]
HAOX2_MOUSE8.641e-2557.29Hydroxyacid oxidase 2 OS=Mus musculus GN=Hao2 PE=2... [more]
HAOX2_RAT3.630e-2356.25Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2... [more]
HAOX_DICDI1.525e-2147.62Hydroxyacid oxidase OS=Dictyostelium discoideum GN... [more]

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Properties
Property NameValue
Genbank descriptionC05055C02SK FlavSen1 Citrus clementina cDNA clone C05055C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294727 ID=CX294727; Name=CX294727; organism=Citrus clementina; type=EST; length=453bp
ACGGAGCGCGCCAACTAGATTATGTCCCTGCAACTGTTATGGCTTTGGAA
GAGGTTGTTCAAGCTGCAAAAGGCCGAGTTCCTGTTTTCCTTGATGGTGG
GGTTCGTCGTGGAACCGATGTCTTCAAGGCTTTGGCTCTAGGAGCATCTG
GAGTATTTGTTGGAAGGCCAGTACCATTCTCGCTGGCAGTTGATGGAGAG
GCTGGTGTGAGAAAAGTGCTTCAGATGCTTCGTGATGAGTTTGAGCTAAC
AATGGCATTAAGTGGGTGCCGTTCGCTCAAGGAGATTACACGCAACCACA
TTGTGACTCATTGGGACACTCCAGGAGCTGTAGCCAGATTGTAAGATGGT
CTCCAACATCAACATTAAAACTTTTCATTTTTAAACAACTGTGATTCGAA
TAACCTAATCCCGGATTCAGGGATTAGCATTTTGTTAAGACGACAAGGAT
GTA
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