CX294745

Overview
NameCX294745
Unique NameCX294745
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14336 contig Ccv1_Contig14336:1152..1760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPA_ARATH (T-complex protein 1 subunit alpha OS=Arabidopsis thaliana GN=CCT1 PE=2 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 7.220e-87
Identity = 170/202 (84.16%), Postives = 179/202 (88.61%), Query Frame = 2
Query:    2 FDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMIKLMKDESQNE 607
            FD + LGS              I+IKGTKT+SAVSLILRGANDYMLDEMERALHDA+C VKRTLESNTVVAGGGAVESALSVYLE+LATTLGSREQLA+AEFA++LLIIPKVLAVNAAKDATELVAKLRAYHH AQTKADKKH SSMGLDL  GTIRNNLEAGVIEPAMSKVKIIQF TEAAITILRIDDMIKL+KDESQ E
Sbjct:  343 FDPAHLGSADEVVEERIADDDVILIKGTKTSSAVSLILRGANDYMLDEMERALHDALCIVKRTLESNTVVAGGGAVESALSVYLEHLATTLGSREQLAIAEFADALLIIPKVLAVNAAKDATELVAKLRAYHHTAQTKADKKHYSSMGLDLVNGTIRNNLEAGVIEPAMSKVKIIQFATEAAITILRIDDMIKLVKDESQGE 544          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPA_DROME (T-complex protein 1 subunit alpha OS=Drosophila melanogaster GN=T-cp1 PE=2 SV=2)

HSP 1 Score: 240.736 bits (613), Expect = 4.263e-63
Identity = 121/202 (59.90%), Postives = 156/202 (77.23%), Query Frame = 2
Query:    2 FDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMIKLMKDESQNE 607
            FD+S++G               I+IKGTK  +A S+ILRG ND+  DEMER++HDA+C VKR LES  VVAGGG VE+ALS+YLE  AT+L SREQLA+AEFA+SLL+IPK L+VNAAKDAT+LVAKLR+YH+++QTK ++  L   GLDL +G +R+N +AGV+EPAMSK+K ++F TEAAITILRIDDMIKL  ++   +
Sbjct:  343 FDASMVGEAAEVAQERICDDELILIKGTKARAAASIILRGPNDFYCDEMERSVHDALCVVKRVLESKKVVAGGGCVEAALSIYLENFATSLASREQLAIAEFAKSLLVIPKTLSVNAAKDATDLVAKLRSYHNSSQTKPERSDLKWTGLDLIEGVVRDNKKAGVLEPAMSKIKSLKFATEAAITILRIDDMIKLNPEDKSGK 544          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPA_CAEEL (T-complex protein 1 subunit alpha OS=Caenorhabditis elegans GN=cct-1 PE=2 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 8.888e-61
Identity = 123/198 (62.12%), Postives = 152/198 (76.77%), Query Frame = 2
Query:    2 FDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMIKLMKDE 595
            FD+SLLG               I+IKG K+ +A S+ILRGAND MLDEMER++HD++C V+R LES  +VAGGGAVE++LS++LE  A TL SREQLA+AEFA +LLIIPKVLA NAA+D+T+LV KLRAYH  AQ     +HL   GLDL +GTIR+N EAG++EPA+SKVK ++F TEAAITILRIDD+IKL K E
Sbjct:  343 FDASLLGHADEIVQERISDDELILIKGPKSRTASSIILRGANDVMLDEMERSVHDSLCVVRRVLESKKLVAGGGAVETSLSLFLETYAQTLSSREQLAVAEFASALLIIPKVLASNAARDSTDLVTKLRAYHSKAQLIPQLQHLKWAGLDLEEGTIRDNKEAGILEPALSKVKSLKFATEAAITILRIDDLIKLDKQE 540          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPA_MONDO (T-complex protein 1 subunit alpha OS=Monodelphis domestica GN=TCP1 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 5.761e-60
Identity = 118/202 (58.42%), Postives = 151/202 (74.75%), Query Frame = 2
Query:    2 FDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMIKLMKDESQNE 607
            F++S+LG               I+IK TK  ++ S+ILRGAND+M DEMER+LHDA+C VKR LES +VV GGGAVE+ALS+YLE  AT++GSREQLA+AEFA SLLIIP  LAVNAA+D+T+LVAKLRA+H+ AQ   ++K+L  +GLDL  G  R+N + GV EP M KVK ++F TEAAITILRIDD+IKL  +   ++
Sbjct:  340 FEASMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLIIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKPRDNRQTGVFEPTMVKVKSLKFATEAAITILRIDDLIKLHPESKDDK 541          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPA_PALPA (T-complex protein 1 subunit alpha OS=Paleosuchus palpebrosus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.283e-59
Identity = 117/202 (57.92%), Postives = 151/202 (74.75%), Query Frame = 2
Query:    2 FDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMIKLMKDESQNE 607
            F++S+LG               I+IK TK  ++ S+ILRGAND+M DEMER++HDA+C VKR LES +VV GGGAVE+ALS+YLE  AT++GSREQLA+AEFA SLLIIP  LAVNAA+DAT+LVAKLRA+H+ AQ   ++K+L  +GLDL  G  R+N +AGV EP + K K ++F TEAAITILRIDD+IKL  +   ++
Sbjct:  343 FEASMLGQAEEVVQERVCDDELILIKNTKARTSASIILRGANDFMCDEMERSIHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLIIPNTLAVNAAQDATDLVAKLRAFHNEAQVNPERKNLKWIGLDLINGKPRDNKQAGVFEPTLVKTKSLKFATEAAITILRIDDLIKLHPESKDDK 544          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPA_MACFA (T-complex protein 1 subunit alpha OS=Macaca fascicularis GN=TCP1 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.283e-59
Identity = 116/202 (57.43%), Postives = 153/202 (75.74%), Query Frame = 2
Query:    2 FDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMIKLMKDESQNE 607
            F++++LG               I+IK TK  ++ S+ILRGAND+M DEMER+LHDA+C VKR LES +VV GGGAVE+ALS+YLE  AT++GSREQLA+AEFA SLL+IP  LAVNAA+D+T+LVAKLRA+H+ AQ   ++K+L  +GLDL+ G  R+N +AGV EP + KVK ++F TEAAITILRIDD+IKL  +   ++
Sbjct:  340 FEAAMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLSNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDDK 541          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPA_HUMAN (T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.283e-59
Identity = 116/202 (57.43%), Postives = 153/202 (75.74%), Query Frame = 2
Query:    2 FDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMIKLMKDESQNE 607
            F++++LG               I+IK TK  ++ S+ILRGAND+M DEMER+LHDA+C VKR LES +VV GGGAVE+ALS+YLE  AT++GSREQLA+AEFA SLL+IP  LAVNAA+D+T+LVAKLRA+H+ AQ   ++K+L  +GLDL+ G  R+N +AGV EP + KVK ++F TEAAITILRIDD+IKL  +   ++
Sbjct:  340 FEAAMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLSNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDDK 541          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPA_DICDI (T-complex protein 1 subunit alpha OS=Dictyostelium discoideum GN=tcp1 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.283e-59
Identity = 119/200 (59.50%), Postives = 152/200 (76.00%), Query Frame = 2
Query:    2 FDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMIKLMKDESQ 601
            FD++ LG               I++K +   SA S+ILRGAN+ MLDEMER++HD++C VKRTLES T+V GGGAVESALS+YL+ +A T+GSR+QLA++EFAESLL++PK LAVNAA DA++LV+KL+AYHHAAQT   KK  +  GLDL    +RNNLEAGV+EPA++K+K I+F TE+AITILRIDD I L   E Q
Sbjct:  341 FDTTALGIADEVVQDRLADDELIIVKNSNKKSA-SIILRGANELMLDEMERSIHDSLCIVKRTLESGTIVPGGGAVESALSIYLDNIAATMGSRKQLAISEFAESLLVVPKQLAVNAALDASDLVSKLKAYHHAAQTDPSKKSYAYSGLDLFNNKVRNNLEAGVLEPAIAKIKCIKFATESAITILRIDDKITLNPREQQ 539          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPA_RAT (T-complex protein 1 subunit alpha OS=Rattus norvegicus GN=Tcp1 PE=1 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.189e-59
Identity = 116/202 (57.43%), Postives = 152/202 (75.25%), Query Frame = 2
Query:    2 FDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMIKLMKDESQNE 607
            F++++LG               I+IK TK  ++ S+ILRGAND+M DEMER+LHDA+C VKR LES +VV GGGAVE+ALS+YLE  AT++GSREQLA+AEFA SLL+IP  LAVNAA+D+T+LVAKLRA+H+ AQ   ++K+L  +GLDL  G  R+N +AGV EP + KVK ++F TEAAITILRIDD+IKL  +   ++
Sbjct:  340 FEATMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVHGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDDK 541          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPA_CRIGR (T-complex protein 1 subunit alpha OS=Cricetulus griseus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.859e-59
Identity = 116/194 (59.79%), Postives = 149/194 (76.80%), Query Frame = 2
Query:    2 FDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSAVSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMIKL 583
            F++++LG               I+IK TK  ++ S+ILRGAND+M DEMER+LHDA+C VKR LES +VV GGGAVE+ALS+YLE  AT++GSREQLA+AEFA SLL+IP  LAVNAA+D+T+LVAKLRA+H+ AQ   ++K+L  +GLDL  G  R+N +AGV EP + KVK ++F TEAAITILRIDD+IKL
Sbjct:  340 FEATMLGQAEEVVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLINGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKL 533          
The following BLAST results are available for this feature:
BLAST of CX294745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
TCPA_ARATH7.220e-8784.16T-complex protein 1 subunit alpha OS=Arabidopsis t... [more]
TCPA_DROME4.263e-6359.90T-complex protein 1 subunit alpha OS=Drosophila me... [more]
TCPA_CAEEL8.888e-6162.12T-complex protein 1 subunit alpha OS=Caenorhabditi... [more]
TCPA_MONDO5.761e-6058.42T-complex protein 1 subunit alpha OS=Monodelphis d... [more]
TCPA_PALPA1.283e-5957.92T-complex protein 1 subunit alpha OS=Paleosuchus p... [more]
TCPA_MACFA1.283e-5957.43T-complex protein 1 subunit alpha OS=Macaca fascic... [more]
TCPA_HUMAN1.283e-5957.43T-complex protein 1 subunit alpha OS=Homo sapiens ... [more]
TCPA_DICDI1.283e-5959.50T-complex protein 1 subunit alpha OS=Dictyostelium... [more]
TCPA_RAT2.189e-5957.43T-complex protein 1 subunit alpha OS=Rattus norveg... [more]
TCPA_CRIGR2.859e-5959.79T-complex protein 1 subunit alpha OS=Cricetulus gr... [more]

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Properties
Property NameValue
Genbank descriptionC05055D11SK FlavSen1 Citrus clementina cDNA clone C05055D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294745 ID=CX294745; Name=CX294745; organism=Citrus clementina; type=EST; length=609bp
ATTTGATTCGTCACTTCTTGGATCTGCTGATGAAGTGGTAGAAGAGCGTG
TTGCCGATGATGATGTGATTATGATAAAGGGGACTAAAACTACAAGTGCG
GTTTCCTTGATACTTAGAGGAGCAAATGACTATATGCTTGATGAGATGGA
GAGAGCCCTGCATGATGCTATATGTACTGTCAAGAGGACCCTTGAATCCA
ACACGGTGGTGGCAGGTGGAGGTGCAGTTGAGTCTGCCTTGTCTGTCTAT
TTGGAATACCTAGCTACAACGCTAGGATCCCGAGAGCAGTTGGCACTTGC
TGAGTTTGCTGAATCTTTATTAATCATACCAAAGGTGCTTGCTGTAAATG
CTGCTAAGGATGCGACTGAGTTGGTTGCAAAACTACGGGCCTACCACCAT
GCTGCACAAACGAAGGCTGATAAAAAACACTTGTCTAGCATGGGACTGGA
TCTTGCAAAGGGGACCATTCGTAACAACTTGGAAGCTGGAGTCATAGAGC
CTGCAATGAGCAAAGTGAAAATTATTCAGTTTGNCACGGAAGCAGCAATC
ACAATTCTTCGTATTGATGATATGATCAAGCTTATGAAAGATGAAAGTCA
GAATGAAGA
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