CX294747

Overview
NameCX294747
Unique NameCX294747
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length641
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294747 vs. ExPASy Swiss-Prot
Match: AB39G_ARATH (ABC transporter G family member 39 OS=Arabidopsis thaliana GN=ABCG39 PE=2 SV=1)

HSP 1 Score: 349.747 bits (896), Expect = 7.201e-96
Identity = 168/212 (79.25%), Postives = 191/212 (90.09%), Query Frame = 2
Query:    5 NAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQVIYAGPLGRQSQKLVEYFEAVPGVPRITNGYNPATWMLEISTPTAEAQLNVDFAEIYVRSSLYQRNEELIKELSTPAPGSSDLYFPTQYSQPFLIQCXACFWKQRQSYWRDPQYNALRFAVT 640
            N++VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FDEL LMKRGGQVIYAG LG  SQKLVEYFEAV GVP+I +GYNPATWML+++TP+ E+Q+++DFA+I+  SSLY+RN+ELIK+LSTP PGS D+YF T+Y+Q F  Q  ACFWKQ  SYWR PQYNA+RF +T
Sbjct:  994 NSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGSLGHHSQKLVEYFEAVEGVPKINDGYNPATWMLDVTTPSMESQMSLDFAQIFSNSSLYRRNQELIKDLSTPPPGSKDVYFKTKYAQSFSTQTKACFWKQYWSYWRHPQYNAIRFLMT 1205          
BLAST of CX294747 vs. ExPASy Swiss-Prot
Match: AB34G_ARATH (ABC transporter G family member 34 OS=Arabidopsis thaliana GN=ABCG34 PE=2 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 4.668e-95
Identity = 168/212 (79.25%), Postives = 191/212 (90.09%), Query Frame = 2
Query:    5 NAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQVIYAGPLGRQSQKLVEYFEAVPGVPRITNGYNPATWMLEISTPTAEAQLNVDFAEIYVRSSLYQRNEELIKELSTPAPGSSDLYFPTQYSQPFLIQCXACFWKQRQSYWRDPQYNALRFAVT 640
            N++VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FDEL LMKRGGQVIYAG LG  SQKLVEYFEA+ GVP+I +GYNPATWML+++TP+ E+Q++VDFA+I+V SS+ +RN+ELIKELSTP PGS+DLYF T+Y+QPF  Q  ACFWK   S WR PQYNA+RF +T
Sbjct:  993 NSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGTLGHHSQKLVEYFEAIEGVPKIKDGYNPATWMLDVTTPSMESQMSVDFAQIFVNSSVNRRNQELIKELSTPPPGSNDLYFRTKYAQPFSTQTKACFWKMYWSNWRYPQYNAIRFLMT 1204          
BLAST of CX294747 vs. ExPASy Swiss-Prot
Match: PDR2_NICPL (Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 7.962e-95
Identity = 170/212 (80.19%), Postives = 185/212 (87.26%), Query Frame = 2
Query:    5 NAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQVIYAGPLGRQSQKLVEYFEAVPGVPRITNGYNPATWMLEISTPTAEAQLNVDFAEIYVRSSLYQRNEELIKELSTPAPGSSDLYFPTQYSQPFLIQCXACFWKQRQSYWRDPQYNALRFAVT 640
            NA+VGLPGVDGLSTEQRKRLT AVELVANPSIIFMDEPTSGLDARAAAIVMRTVR TVDTGRTVVCTIHQPSIDIFEAFDEL LMK GGQVIYAGPLG +S KLVEYFE +PGVP+I    NPATWML++S+ + EAQL VDFAE+Y  S+LYQRN+ LIKELSTPA  S DLYFPTQYSQ F+ QC ACFWKQ  SYWR+ QYNA+RF +T
Sbjct: 1000 NALVGLPGVDGLSTEQRKRLTTAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRKTVDTGRTVVCTIHQPSIDIFEAFDELLLMKIGGQVIYAGPLGHRSHKLVEYFETIPGVPKIRESDNPATWMLDVSSSSMEAQLVVDFAEVYANSNLYQRNQLLIKELSTPATCSKDLYFPTQYSQSFITQCKACFWKQHWSYWRNSQYNAIRFFMT 1211          
BLAST of CX294747 vs. ExPASy Swiss-Prot
Match: PDR5_ORYSJ (Pleiotropic drug resistance protein 5 OS=Oryza sativa subsp. japonica GN=PDR5 PE=2 SV=2)

HSP 1 Score: 338.191 bits (866), Expect = 2.168e-92
Identity = 164/212 (77.36%), Postives = 187/212 (88.21%), Query Frame = 2
Query:    5 NAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQVIYAGPLGRQSQKLVEYFEAVPGVPRITNGYNPATWMLEISTPTAEAQLNVDFAEIYVRSSLYQRNEELIKELSTPAPGSSDLYFPTQYSQPFLIQCXACFWKQRQSYWRDPQYNALRFAVT 640
            +A+VGLPGV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFE+FDEL L+KRGG+VIYAG LG  SQ LVEYFEA+PGVP+IT GYNPATWMLE+S+  AEA+L++DFAE+Y  S+LY+ N+ELIK+LS P PG  DL FPT+YSQ FL QC A  WKQ QSYW+DP YNA+R+ +T
Sbjct:  993 DALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFESFDELLLLKRGGRVIYAGQLGLHSQILVEYFEAIPGVPKITEGYNPATWMLEVSSSLAEARLDIDFAEVYANSALYRSNQELIKQLSVPPPGFQDLSFPTKYSQNFLNQCVANTWKQFQSYWKDPPYNAMRYVMT 1204          
BLAST of CX294747 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSJ (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 2.168e-92
Identity = 164/212 (77.36%), Postives = 185/212 (87.26%), Query Frame = 2
Query:    5 NAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQVIYAGPLGRQSQKLVEYFEAVPGVPRITNGYNPATWMLEISTPTAEAQLNVDFAEIYVRSSLYQRNEELIKELSTPAPGSSDLYFPTQYSQPFLIQCXACFWKQRQSYWRDPQYNALRFAVT 640
            +A+VGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG+ IYAGPLG  S +L++YFE++PGV +I +GYNPATWMLE++T   E  L VDF++IY +S LYQRN+ LIK+LS PAP SSDLYFPTQYSQ  L QC AC WKQ  SYWR+P YNA+RF  T
Sbjct: 1001 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGPLGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFT 1212          
BLAST of CX294747 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSI (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 2.168e-92
Identity = 164/212 (77.36%), Postives = 185/212 (87.26%), Query Frame = 2
Query:    5 NAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQVIYAGPLGRQSQKLVEYFEAVPGVPRITNGYNPATWMLEISTPTAEAQLNVDFAEIYVRSSLYQRNEELIKELSTPAPGSSDLYFPTQYSQPFLIQCXACFWKQRQSYWRDPQYNALRFAVT 640
            +A+VGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG+ IYAGPLG  S +L++YFE++PGV +I +GYNPATWMLE++T   E  L VDF++IY +S LYQRN+ LIK+LS PAP SSDLYFPTQYSQ  L QC AC WKQ  SYWR+P YNA+RF  T
Sbjct: 1001 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGPLGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFT 1212          
BLAST of CX294747 vs. ExPASy Swiss-Prot
Match: PDR1_ORYSJ (Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 4.830e-92
Identity = 162/212 (76.42%), Postives = 185/212 (87.26%), Query Frame = 2
Query:    5 NAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQVIYAGPLGRQSQKLVEYFEAVPGVPRITNGYNPATWMLEISTPTAEAQLNVDFAEIYVRSSLYQRNEELIKELSTPAPGSSDLYFPTQYSQPFLIQCXACFWKQRQSYWRDPQYNALRFAVT 640
            +A+VGLPGV+GLS EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG+ IY GPLG  S +L++YFE + GV +IT+GYNPATWMLE++T + E  L+VDF +IY +S L+QRN+ LI+ELSTP PGSS+LYFPTQYSQ FLIQC AC WKQ  SYWR+P YNA+R   T
Sbjct: 1012 DALVGLPGVNGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHHSSELIKYFEGIQGVSKITDGYNPATWMLEVTTVSQEQALDVDFCDIYRKSELFQRNKALIQELSTPPPGSSELYFPTQYSQSFLIQCLACLWKQHLSYWRNPPYNAIRLFFT 1223          
BLAST of CX294747 vs. ExPASy Swiss-Prot
Match: AB40G_ARATH (ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 4.830e-92
Identity = 163/211 (77.25%), Postives = 180/211 (85.31%), Query Frame = 2
Query:    8 AMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQVIYAGPLGRQSQKLVEYFEAVPGVPRITNGYNPATWMLEISTPTAEAQLNVDFAEIYVRSSLYQRNEELIKELSTPAPGSSDLYFPTQYSQPFLIQCXACFWKQRQSYWRDPQYNALRFAVT 640
            A+VGLPG  GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL+KRGG+ IY GPLG +S  L+ YFE++ G+ +IT GYNPATWMLE+ST + EA L VDFA++Y  S LY+RN+ELIKELS PAPGS DLYFPTQYSQ FL QC A  WKQ  SYWR+P Y A+RF  T
Sbjct:  967 ALVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGHESTHLINYFESIQGINKITEGYNPATWMLEVSTTSQEAALGVDFAQVYKNSELYKRNKELIKELSQPAPGSKDLYFPTQYSQSFLTQCMASLWKQHWSYWRNPPYTAVRFLFT 1177          
BLAST of CX294747 vs. ExPASy Swiss-Prot
Match: PDR4_ORYSJ (Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1)

HSP 1 Score: 333.954 bits (855), Expect = 4.089e-91
Identity = 161/211 (76.30%), Postives = 181/211 (85.78%), Query Frame = 2
Query:    8 AMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQVIYAGPLGRQSQKLVEYFEAVPGVPRITNGYNPATWMLEISTPTAEAQLNVDFAEIYVRSSLYQRNEELIKELSTPAPGSSDLYFPTQYSQPFLIQCXACFWKQRQSYWRDPQYNALRFAVT 640
            A+VGLPGV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG+ IY GP+G+ S KL+EYFE + GV RI +GYNPATWMLE+++   E  L VDF+EIY +S LYQRN+ELI+ELSTP PGS+DL FPTQYS+ F+ QC AC WKQ  SYWR+P Y A+R   T
Sbjct:  994 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPVGQNSSKLIEYFEGIDGVSRIKDGYNPATWMLEVTSSAQEEMLGVDFSEIYRQSELYQRNKELIEELSTPPPGSTDLNFPTQYSRSFITQCLACLWKQNWSYWRNPSYTAVRLLFT 1204          
BLAST of CX294747 vs. ExPASy Swiss-Prot
Match: PDR2_ORYSJ (Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 5.341e-91
Identity = 162/212 (76.42%), Postives = 182/212 (85.85%), Query Frame = 2
Query:    5 NAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQVIYAGPLGRQSQKLVEYFEAVPGVPRITNGYNPATWMLEISTPTAEAQLNVDFAEIYVRSSLYQRNEELIKELSTPAPGSSDLYFPTQYSQPFLIQCXACFWKQRQSYWRDPQYNALRFAVT 640
            +A+VGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG+ IY GPLG QS +L++YFE + GV RI +GYNPATWMLE+ST + E  L VDF +IY +S L+QRN+ LI+ELSTP PGSS+LYFPT+YS  FL QC AC WK   SYWR+P YNA+R   T
Sbjct: 1008 DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHQSSELIKYFEGIKGVSRIKDGYNPATWMLEVSTISQEQALGVDFCDIYRKSELFQRNKALIQELSTPPPGSSELYFPTKYSLSFLNQCLACLWKMHLSYWRNPPYNAIRLFFT 1219          
The following BLAST results are available for this feature:
BLAST of CX294747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
AB39G_ARATH7.201e-9679.25ABC transporter G family member 39 OS=Arabidopsis ... [more]
AB34G_ARATH4.668e-9579.25ABC transporter G family member 34 OS=Arabidopsis ... [more]
PDR2_NICPL7.962e-9580.19Pleiotropic drug resistance protein 2 OS=Nicotiana... [more]
PDR5_ORYSJ2.168e-9277.36Pleiotropic drug resistance protein 5 OS=Oryza sat... [more]
PDR3_ORYSJ2.168e-9277.36Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR3_ORYSI2.168e-9277.36Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR1_ORYSJ4.830e-9276.42Probable pleiotropic drug resistance protein 1 OS=... [more]
AB40G_ARATH4.830e-9277.25ABC transporter G family member 40 OS=Arabidopsis ... [more]
PDR4_ORYSJ4.089e-9176.30Pleiotropic drug resistance protein 4 OS=Oryza sat... [more]
PDR2_ORYSJ5.341e-9176.42Probable pleiotropic drug resistance protein 2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC05055E01SK FlavSen1 Citrus clementina cDNA clone C05055E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294747 ID=CX294747; Name=CX294747; organism=Citrus clementina; type=EST; length=641bp
GACGAATGCTATGGTTGGCCTTCCAGGAGTAGATGGTCTTTCTACAGAAC
AAAGGAAAAGGTTAACAATAGCTGTAGAATTGGTTGCTAACCCCTCTATA
ATATTCATGGATGAGCCAACATCTGGCCTTGACGCTAGAGCTGCTGCCAT
TGTCATGCGTACTGTGAGAAATACAGTTGATACAGGGAGAACTGTTGTGT
GTACCATACACCAGCCAAGCATAGACATTTTTGAAGCATTTGATGAGCTA
TTTTTGATGAAAAGAGGAGGGCAAGTCATATATGCTGGCCCCCTTGGTCG
CCAGTCTCAGAAGCTCGTAGAATATTTTGAGGCTGTCCCCGGGGTTCCCA
GAATTACGAATGGATACAATCCAGCTACATGGATGCTCGAGATCAGTACT
CCTACGGCTGAGGCTCAATTGAATGTTGATTTTGCGGAGATTTATGTCAG
ATCCTCTCTTTATCAGAGGAACGAAGAACTTATCAAAGAGCTTAGTACTC
CAGCACCAGGCTCCAGTGACCTCTACTTCCCAACCCAATACTCTCAACCC
TTCCTTATTCAATGCANGGCTTGCTTCTGGAAGCAGCGTCAGTCTTATTG
GAGAGACCCTCAGTATAATGCTTTGCGTTTCGCTGTGACAT
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