CX294748

Overview
NameCX294748
Unique NameCX294748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length584
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8314 contig Ccv1_Contig8314:452..1035. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_LACSA (Peptide methionine sulfoxide reductase OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.333e-71
Identity = 122/140 (87.14%), Postives = 131/140 (93.57%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG 420
            VGY+QG+LHNP+Y D+CSGTTNH+EVVRVQYDPK CSFD+LLD FW RHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAA E+ ER QK LNR +VTEILPAKKFYRAEEYHQQYLAKGGRFGF+QSTEKGCNDPIRCYG
Sbjct:  120 VGYTQGFLHNPTYNDICSGTTNHSEVVRVQYDPKACSFDSLLDCFWERHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAIEAKERHQKKLNRTVVTEILPAKKFYRAEEYHQQYLAKGGRFGFRQSTEKGCNDPIRCYG 259          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_ARATH (Peptide methionine sulfoxide reductase OS=Arabidopsis thaliana GN=PMSR PE=1 SV=2)

HSP 1 Score: 251.906 bits (642), Expect = 1.686e-66
Identity = 112/140 (80.00%), Postives = 127/140 (90.71%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG 420
            VGYS G +HNPSYEDVC+GTT HNEVVRVQYDPKECSF++LLD+FW RHDPTTLNRQG DVGTQYRSGIY+YT EQE+ A+E++E+QQK+LN++IVTEILPA KFYRAE YHQQYLAKGGR G +QS EKGC DPIRCYG
Sbjct:  119 VGYSHGIVHNPSYEDVCTGTTGHNEVVRVQYDPKECSFESLLDVFWNRHDPTTLNRQGGDVGTQYRSGIYYYTDEQERIAREAVEKQQKILNKRIVTEILPATKFYRAENYHQQYLAKGGRMGLRQSAEKGCKDPIRCYG 258          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_BRANA (Peptide methionine sulfoxide reductase OS=Brassica napus GN=PMSR PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 4.907e-66
Identity = 113/140 (80.71%), Postives = 126/140 (90.00%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG 420
            VGYS G++ NP+YEDVCS TT HNE+VRVQYDPKE SF++LLD+FW RHDPTTLNRQGNDVGT+YRSGIYFYT EQEK A+E++E+QQK+LNRKIVTEILPA KFYRAE YHQQYLAKGGR G  QS EKGCNDPIRCYG
Sbjct:  118 VGYSHGFVDNPTYEDVCSETTGHNEIVRVQYDPKEVSFESLLDVFWKRHDPTTLNRQGNDVGTRYRSGIYFYTDEQEKLAREAMEKQQKILNRKIVTEILPATKFYRAENYHQQYLAKGGRMGLSQSAEKGCNDPIRCYG 257          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_FRAAN (Peptide methionine sulfoxide reductase OS=Fragaria ananassa PE=2 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 2.285e-55
Identity = 98/141 (69.50%), Postives = 119/141 (84.40%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-NRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG 420
            VGYSQG++H+P+Y  VCSGTTNH+EVVRVQ+DP+ C +  LL +FW+RHDPTTLNRQG DVGTQYRSGIY+Y  EQ+  AK+S E +QK   ++++VTEILPAK+FYRAEEYHQQYL KGG  G KQS +KGCNDPI+CYG
Sbjct:   51 VGYSQGHVHDPNYRLVCSGTTNHSEVVRVQFDPQVCPYSDLLSVFWSRHDPTTLNRQGGDVGTQYRSGIYYYNEEQDCLAKKSKEAKQKEFKDKRVVTEILPAKRFYRAEEYHQQYLEKGGGNGNKQSAQKGCNDPIKCYG 191          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_SOLLC (Peptide methionine sulfoxide reductase (Fragment) OS=Solanum lycopersicum GN=E4 PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 1.934e-54
Identity = 96/141 (68.09%), Postives = 115/141 (81.56%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQK-VLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG 420
            VGYSQG +H+P+Y+ +CSGTT H E +R+Q+DP  C +  LL +FW+RHDPTTLNRQGNDVG QYRSGIY+Y   Q + A+ESLE +QK  +++KIVTEILPAK+FYRAEEYHQQYL KGG  G KQS  KGCNDPIRCYG
Sbjct:   56 VGYSQGNVHDPNYKLICSGTTEHAEAIRIQFDPNVCPYSNLLSLFWSRHDPTTLNRQGNDVGKQYRSGIYYYNDAQAQLARESLEAKQKEFMDKKIVTEILPAKRFYRAEEYHQQYLEKGGGRGCKQSAAKGCNDPIRCYG 196          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_CYAP8 (Peptide methionine sulfoxide reductase msrA OS=Cyanothece sp. (strain PCC 8801) GN=msrA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 9.979e-35
Identity = 72/122 (59.02%), Postives = 89/122 (72.95%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK 354
            VGY+ G   NP+Y++VC+G T HNEVV V +DPK  S++ LL +FW  H+PT   RQGNDVGTQYRSGIY Y+P+ +KAA+ S E  QK LN+     I TEIL A +FY AE+YHQQYLAK
Sbjct:   75 VGYAAGITPNPTYQEVCTGLTGHNEVVLVVFDPKIISYEELLKVFWESHNPTQGMRQGNDVGTQYRSGIYVYSPQHKKAAETSKEVYQKALNQAGYGDITTEILDAPEFYYAEDYHQQYLAK 196          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA1_SYNY3 (Peptide methionine sulfoxide reductase msrA 1 OS=Synechocystis sp. (strain PCC 6803) GN=msrA1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.702e-34
Identity = 70/122 (57.38%), Postives = 89/122 (72.95%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK 354
            VGY+ GY  NP+Y++VC+G T HNEVV V +DP++ S+D LL +FW  H+PT   RQGNDVGTQYRSGIY Y+  Q++AA  S +  Q+ L +    +I TEILPA  FY AE+YHQQYLAK
Sbjct:   76 VGYAAGYTPNPTYQEVCTGMTGHNEVVLVAFDPQQVSYDQLLKVFWESHNPTQGMRQGNDVGTQYRSGIYTYSEAQQQAALASKQAYQQALQQAGYGEITTEILPAPDFYYAEDYHQQYLAK 197          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_SACD2 (Peptide methionine sulfoxide reductase msrA OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=msrA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.882e-33
Identity = 70/122 (57.38%), Postives = 87/122 (71.31%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 354
            VGYS G+  NP+YE+VCSG+T HNEVV V Y+P + SF  LL +FW  H+PT   RQGND+GTQYRSG+Y Y+ EQ + A+ S +  Q +L  K    I TEI+ AK+FY AE YHQQYLAK
Sbjct:   76 VGYSAGFTPNPTYEEVCSGSTGHNEVVLVVYNPSQVSFKKLLAVFWESHNPTQGMRQGNDLGTQYRSGVYVYSDEQAEQAEHSKQVVQAMLTEKGYGEITTEIIKAKEFYFAEAYHQQYLAK 197          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_METTH (Peptide methionine sulfoxide reductase msrA OS=Methanobacterium thermoautotrophicum GN=msrA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.192e-33
Identity = 70/123 (56.91%), Postives = 85/123 (69.11%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKV--LNRKIVTEILPAKKFYRAEEYHQQYLAKGGR 363
            VGY  G+L NP+YEDVC+G T H EVV V +DP    +  LLD+FW+ HDPTTLNRQG DVG QYRS I++++ EQ +AA ES  R ++      +IVT I PA  FY AEEYHQQYL K  R
Sbjct:   35 VGYMGGHLENPTYEDVCTGLTGHAEVVEVTFDPDVVGYSDLLDVFWSIHDPTTLNRQGPDVGEQYRSVIFYHSDEQRRAAIESRRRLEESGRFRDRIVTAIEPAGTFYEAEEYHQQYLEKNPR 157          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_ENTS8 (Peptide methionine sulfoxide reductase msrA OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=msrA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 9.340e-33
Identity = 71/122 (58.20%), Postives = 81/122 (66.39%), Query Frame = 1
Query:    4 GYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLN-----RKIVTEILPAKKFYRAEEYHQQYLAK 354
            GY+ GY  NP+Y +VCSG T H E VRV YDP   S++ LL +FW  HDP    RQGNDVGTQYRS IY  TPEQE AA+ SLER +  +      R I TEI PAK FY AE+ HQQYL K
Sbjct:   72 GYTGGYTPNPTYREVCSGQTGHAEAVRVVYDPNVISYEQLLQVFWENHDPAQGMRQGNDVGTQYRSAIYPLTPEQEAAAQASLERFRAAMEAAGDYRHITTEIAPAKPFYYAEDEHQQYLHK 193          
The following BLAST results are available for this feature:
BLAST of CX294748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_LACSA1.333e-7187.14Peptide methionine sulfoxide reductase OS=Lactuca ... [more]
MSRA_ARATH1.686e-6680.00Peptide methionine sulfoxide reductase OS=Arabidop... [more]
MSRA_BRANA4.907e-6680.71Peptide methionine sulfoxide reductase OS=Brassica... [more]
MSRA_FRAAN2.285e-5569.50Peptide methionine sulfoxide reductase OS=Fragaria... [more]
MSRA_SOLLC1.934e-5468.09Peptide methionine sulfoxide reductase (Fragment) ... [more]
MSRA_CYAP89.979e-3559.02Peptide methionine sulfoxide reductase msrA OS=Cya... [more]
MSRA1_SYNY31.702e-3457.38Peptide methionine sulfoxide reductase msrA 1 OS=S... [more]
MSRA_SACD21.882e-3357.38Peptide methionine sulfoxide reductase msrA OS=Sac... [more]
MSRA_METTH4.192e-3356.91Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_ENTS89.340e-3358.20Peptide methionine sulfoxide reductase msrA OS=Ent... [more]

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Properties
Property NameValue
Genbank descriptionC05055E02SK FlavSen1 Citrus clementina cDNA clone C05055E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294748 ID=CX294748; Name=CX294748; organism=Citrus clementina; type=EST; length=584bp
GTTGGGTACAGCCAAGGCTACTTGCATAACCCTAGCTACGAGGACGTGTG
CAGTGGGACTACCAATCATAATGAAGTTGTTAGGGTTCAGTATGATCCTA
AGGAGTGTAGTTTCGATACTTTGCTTGATATGTTTTGGGCTCGCCATGAT
CCTACCACGCTTAATCGGCAGGGTAATGATGTTGGAACACAGTACAGATC
TGGAATTTATTTTTACACTCCTGAGCAAGAGAAGGCAGCCAAGGAGTCCT
TGGAGAGACAGCAGAAGGTCTTGAACAGGAAAATTGTCACCGAAATCCTA
CCTGCCAAGAAGTTCTACCGAGCTGAGGAATACCACCAGCAGTATCTTGC
AAAAGGGGGTCGATTTGGATTCAAACAATCTACTGAGAAAGGCTGCAATG
ATCCTATCAGGTGCTATGGCTAAATAGTACCCTGCTATTACAGTTAATTT
TCAGCTTTTTTCTGAATCTTAGCCATTATAACTTGCATTCTTGCTATGAT
AAGAATGCCAGATGTATTTAGTGTCTGAACTTGGGTATGTAACTAGTCAT
AGTCTCTTAAACCATCATCTATATCTGTAATTTC
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