CX294751

Overview
NameCX294751
Unique NameCX294751
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length583
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294751_ssr37 microsatellite CX294751_ssr37:37..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX294751 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.086e-12
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 3 
Query:  177 KIRGKEGIPPSQQRFLFTGKQLDDGRTLADYNI-K**TFHLVLRLKGG 317
            KI+ KEGIPP QQR +F GKQL+DGRTLADYNI K  T HLVLRL+GG
Sbjct:   29 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX294751 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.086e-12
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 3 
Query:  177 KIRGKEGIPPSQQRFLFTGKQLDDGRTLADYNI-K**TFHLVLRLKGG 317
            KI+ KEGIPP QQR +F GKQL+DGRTLADYNI K  T HLVLRL+GG
Sbjct:   29 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX294751 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.086e-12
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 3 
Query:  177 KIRGKEGIPPSQQRFLFTGKQLDDGRTLADYNI-K**TFHLVLRLKGG 317
            KI+ KEGIPP QQR +F GKQL+DGRTLADYNI K  T HLVLRL+GG
Sbjct:   29 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX294751 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.086e-12
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 3 
Query:  177 KIRGKEGIPPSQQRFLFTGKQLDDGRTLADYNI-K**TFHLVLRLKGG 317
            KI+ KEGIPP QQR +F GKQL+DGRTLADYNI K  T HLVLRL+GG
Sbjct:   29 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX294751 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.086e-12
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 3 
Query:  177 KIRGKEGIPPSQQRFLFTGKQLDDGRTLADYNI-K**TFHLVLRLKGG 317
            KI+ KEGIPP QQR +F GKQL+DGRTLADYNI K  T HLVLRL+GG
Sbjct:   29 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX294751 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.086e-12
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 3 
Query:  177 KIRGKEGIPPSQQRFLFTGKQLDDGRTLADYNI-K**TFHLVLRLKGG 317
            KI+ KEGIPP QQR +F GKQL+DGRTLADYNI K  T HLVLRL+GG
Sbjct:   29 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX294751 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.086e-12
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 3 
Query:  177 KIRGKEGIPPSQQRFLFTGKQLDDGRTLADYNI-K**TFHLVLRLKGG 317
            KI+ KEGIPP QQR +F GKQL+DGRTLADYNI K  T HLVLRL+GG
Sbjct:   29 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX294751 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.086e-12
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 3 
Query:  177 KIRGKEGIPPSQQRFLFTGKQLDDGRTLADYNI-K**TFHLVLRLKGG 317
            KI+ KEGIPP QQR +F GKQL+DGRTLADYNI K  T HLVLRL+GG
Sbjct:   29 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX294751 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.086e-12
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 3 
Query:  177 KIRGKEGIPPSQQRFLFTGKQLDDGRTLADYNI-K**TFHLVLRLKGG 317
            KI+ KEGIPP QQR +F GKQL+DGRTLADYNI K  T HLVLRL+GG
Sbjct:   29 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX294751 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.086e-12
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 3 
Query:  177 KIRGKEGIPPSQQRFLFTGKQLDDGRTLADYNI-K**TFHLVLRLKGG 317
            KI+ KEGIPP QQR +F GKQL+DGRTLADYNI K  T HLVLRL+GG
Sbjct:   29 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CX294751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
UBIQ_WHEAT3.086e-1275.00Ubiquitin OS=Triticum aestivum PE=3 SV=1[more]
UBIQ_TRYCR3.086e-1275.00Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1[more]
UBIQ_SOYBN3.086e-1275.00Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1[more]
UBIQ_SOLTU3.086e-1275.00Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1[more]
UBIQ_SOLLC3.086e-1275.00Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=... [more]
UBIQ_PETCR3.086e-1275.00Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3... [more]
UBIQ_PEA3.086e-1275.00Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1[more]
UBIQ_ORYSJ3.086e-1275.00Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ... [more]
UBIQ_NICSY3.086e-1275.00Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE... [more]
UBIQ_MAIZE3.086e-1275.00Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05055E05SK FlavSen1 Citrus clementina cDNA clone C05055E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294751 ID=CX294751; Name=CX294751; organism=Citrus clementina; type=EST; length=583bp
CATAAGGATAGCTTGGTGCAGACCGCAGATAAAGATGAGAGAGAGAGAGA
GGAGAGAAATTTCCTCTCTCTTTCTCTCTACCCACCGACTCTCTCGTCGC
TTCGTCTTTTTTTTTCTCTCTTCTTTATCTGTGGGTGGCATTTTTCTTCG
ATAAATGGCCCCCTCATCACTCTGTTAAGATCCGCGGCAAGGAAGGGATT
CCACCAAGCCAGCAGAGGTTCCTCTTTACTGGCAAACAACTTGACGATGG
TCGCACGCTTGCAGACTACAATATCAAGTAGTGAACCTTTCATTTGGTCC
TCCGTCTCAAGGGTGGCATGCAGATTTTTGTGAAAACCCTAACCGGCAAA
ACATAAACTTGGAGATCGATAGCTCTGACACAATCGACAATGTCAAGGCT
AAGATCCAGGACAAAGGAGCGGATTCCCGCGGACCAGCAGAGTCATTATT
ATTTTTTTTTTTTTTGAAGAGCTTTGAAGTTTCTTTTGGCTTACGTGAGG
TTTGACCGTGAGAATGTATCTGCATCTGGACGGTATAAGAATGTATCTGT
ATCTGGACGGTATAAGAATGTATAAGAATGTAT
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