CX294757

Overview
NameCX294757
Unique NameCX294757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length633
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294757 vs. ExPASy Swiss-Prot
Match: RL222_ARATH (60S ribosomal protein L22-2 OS=Arabidopsis thaliana GN=RPL22B PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.526e-37
Identity = 77/101 (76.24%), Postives = 85/101 (84.16%), Query Frame = 3
Query:    6 KPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 308
            KPV+DKIM+IASLEKFLQERIKVGGKAGALGDSVT+TREK+KITVT+D  FS              HNVRDWLRVIA+NKDR++YELRYFNIAENEGEEED
Sbjct:   24 KPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAENEGEEED 124          
BLAST of CX294757 vs. ExPASy Swiss-Prot
Match: RL223_ARATH (60S ribosomal protein L22-3 OS=Arabidopsis thaliana GN=RPL22C PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.647e-36
Identity = 75/101 (74.26%), Postives = 84/101 (83.17%), Query Frame = 3
Query:    6 KPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 308
            KPV+DKIM+IASLEKFLQERIKVGGKAGALGDSV++TREK+KITVT+D  FS              HNVRDWLRVIA+NKDR++YELRYFNIAENE EEED
Sbjct:   24 KPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVSITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAENEAEEED 124          
BLAST of CX294757 vs. ExPASy Swiss-Prot
Match: RL221_ARATH (Putative 60S ribosomal protein L22-1 OS=Arabidopsis thaliana GN=RPL22A PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.428e-25
Identity = 57/101 (56.44%), Postives = 73/101 (72.28%), Query Frame = 3
Query:    6 KPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 308
            KPV+D I++IA+LEKFLQERIKV GKAGALG+SV++TR   KI V ++SNFS              +N+RDWLRVIASNKD++VYE+RYF I +     E+
Sbjct:   26 KPVDDTILEIATLEKFLQERIKVRGKAGALGNSVSITRYNGKINVNANSNFSKRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYFRIDDEVASYEE 126          
BLAST of CX294757 vs. ExPASy Swiss-Prot
Match: RL22_RAT (60S ribosomal protein L22 OS=Rattus norvegicus GN=Rpl22 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.314e-21
Identity = 56/101 (55.45%), Postives = 69/101 (68.32%), Query Frame = 3
Query:    9 PVEDKIMDIASLEKFLQERIKVGGKAGALGDSV-TVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 308
            PVED IMD A+ E+FLQERIKV GKAG LG  V T+ R K+KITVTS+  FS              +N+RDWLRV+A++K+   YELRYF I ++E EEED
Sbjct:   28 PVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEEPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 126          
BLAST of CX294757 vs. ExPASy Swiss-Prot
Match: RL22_PIG (60S ribosomal protein L22 OS=Sus scrofa GN=RPL22 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 5.653e-21
Identity = 56/101 (55.45%), Postives = 69/101 (68.32%), Query Frame = 3
Query:    9 PVEDKIMDIASLEKFLQERIKVGGKAGALGDSV-TVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 308
            PVED IMD A+ E+FLQERIKV GKAG LG  V T+ R K+KITVTS+  FS              +N+RDWLRV+A++K+   YELRYF I ++E EEED
Sbjct:   28 PVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 126          
BLAST of CX294757 vs. ExPASy Swiss-Prot
Match: RL22_MOUSE (60S ribosomal protein L22 OS=Mus musculus GN=Rpl22 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 5.653e-21
Identity = 56/101 (55.45%), Postives = 69/101 (68.32%), Query Frame = 3
Query:    9 PVEDKIMDIASLEKFLQERIKVGGKAGALGDSV-TVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 308
            PVED IMD A+ E+FLQERIKV GKAG LG  V T+ R K+KITVTS+  FS              +N+RDWLRV+A++K+   YELRYF I ++E EEED
Sbjct:   28 PVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 126          
BLAST of CX294757 vs. ExPASy Swiss-Prot
Match: RL22_MACFA (60S ribosomal protein L22 OS=Macaca fascicularis GN=RPL22 PE=2 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 5.653e-21
Identity = 56/101 (55.45%), Postives = 69/101 (68.32%), Query Frame = 3
Query:    9 PVEDKIMDIASLEKFLQERIKVGGKAGALGDSV-TVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 308
            PVED IMD A+ E+FLQERIKV GKAG LG  V T+ R K+KITVTS+  FS              +N+RDWLRV+A++K+   YELRYF I ++E EEED
Sbjct:   28 PVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 126          
BLAST of CX294757 vs. ExPASy Swiss-Prot
Match: RL22_HUMAN (60S ribosomal protein L22 OS=Homo sapiens GN=RPL22 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 5.653e-21
Identity = 56/101 (55.45%), Postives = 69/101 (68.32%), Query Frame = 3
Query:    9 PVEDKIMDIASLEKFLQERIKVGGKAGALGDSV-TVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 308
            PVED IMD A+ E+FLQERIKV GKAG LG  V T+ R K+KITVTS+  FS              +N+RDWLRV+A++K+   YELRYF I ++E EEED
Sbjct:   28 PVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 126          
BLAST of CX294757 vs. ExPASy Swiss-Prot
Match: RL22_ICTPU (60S ribosomal protein L22 OS=Ictalurus punctatus GN=rpl22 PE=2 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 7.383e-21
Identity = 56/101 (55.45%), Postives = 68/101 (67.33%), Query Frame = 3
Query:    9 PVEDKIMDIASLEKFLQERIKVGGKAGALGDSV-TVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 308
            PVED IMD A+ E+FLQERIKV GKAG LG  V ++ R K+KITVTSD  FS              +N+RDWLRV+A+ K+   YELRYF I ++E EEED
Sbjct:   28 PVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVSIERSKSKITVTSDIPFSKRYLKYLTKKYLKKNNLRDWLRVVANTKES--YELRYFQINQDEEEEED 126          
BLAST of CX294757 vs. ExPASy Swiss-Prot
Match: RL22_CHICK (60S ribosomal protein L22 OS=Gallus gallus GN=RPL22 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.645e-20
Identity = 55/101 (54.46%), Postives = 69/101 (68.32%), Query Frame = 3
Query:    9 PVEDKIMDIASLEKFLQERIKVGGKAGALGDSV-TVTREKTKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 308
            PVED IMD A+ E+FLQERIKV GKAG LG  V T+ R K+KITVTS+  FS              +N+RDWLRV+A++K+   YELRYF I ++E EEE+
Sbjct:   28 PVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEEE 126          
The following BLAST results are available for this feature:
BLAST of CX294757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RL222_ARATH2.526e-3776.2460S ribosomal protein L22-2 OS=Arabidopsis thalian... [more]
RL223_ARATH3.647e-3674.2660S ribosomal protein L22-3 OS=Arabidopsis thalian... [more]
RL221_ARATH8.428e-2556.44Putative 60S ribosomal protein L22-1 OS=Arabidopsi... [more]
RL22_RAT3.314e-2155.4560S ribosomal protein L22 OS=Rattus norvegicus GN=... [more]
RL22_PIG5.653e-2155.4560S ribosomal protein L22 OS=Sus scrofa GN=RPL22 P... [more]
RL22_MOUSE5.653e-2155.4560S ribosomal protein L22 OS=Mus musculus GN=Rpl22... [more]
RL22_MACFA5.653e-2155.4560S ribosomal protein L22 OS=Macaca fascicularis G... [more]
RL22_HUMAN5.653e-2155.4560S ribosomal protein L22 OS=Homo sapiens GN=RPL22... [more]
RL22_ICTPU7.383e-2155.4560S ribosomal protein L22 OS=Ictalurus punctatus G... [more]
RL22_CHICK1.645e-2054.4660S ribosomal protein L22 OS=Gallus gallus GN=RPL2... [more]

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Properties
Property NameValue
Genbank descriptionC05055E11SK FlavSen1 Citrus clementina cDNA clone C05055E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294757 ID=CX294757; Name=CX294757; organism=Citrus clementina; type=EST; length=633bp
GCGGGAAGCCTGTGGAGGACAAAATCATGGACATTGCGTCCTTGGAAAAG
TTCCTCCAGGAGCGGATCAAGGTCGGCGGCAAGGCTGGTGCCCTTGGGGA
TTCAGTTACCGTCACCCGTGAGAAGACCAAGATCACCGTCACTTCTGACA
GCAACTTCTCTAAGAGGTATCTTAAATATTTGACCAAGAAGTACTTGAAG
AAACACAATGTAAGAGATTGGCTCCGAGTGATTGCTTCAAACAAGGACCG
AAGTGTCTATGAGCTGCGATACTTCAACATTGCTGAGAATGAGGGAGAGG
AGGAAGACTGAAGATCCATTTCAGTATTTCCTCATATTATATCTATTCTG
ATTACTTGTTCTAGCTCTTTTTTCTTTTTTTCTCCTGCGATCAAATCTGT
GGACTTGTTTGAATTGTTTATGAGATCATTCTTAGTTTATGTTCTGTTGA
AATTTTGTTTACTTTTTAGATATATGTTTTTTTTTTTTTGGGTTGTATAA
GATGCTTTAATACTATGCCAGTTTTTTCTCAAGTGGTTGGTTATTTAGTG
GTGGATATTGTTATTCACTCGTAACTTTGTATGATCAAGCCCACCTGTGG
TTGGGACTCTCAGTCATTTTGAGCTAGTAAGGC
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