CX294765

Overview
NameCX294765
Unique NameCX294765
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length393
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11747 contig Ccv1_Contig11747:1002..1394. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294765 vs. ExPASy Swiss-Prot
Match: METB_ARATH (Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3)

HSP 1 Score: 199.134 bits (505), Expect = 5.645e-51
Identity = 93/113 (82.30%), Postives = 102/113 (90.27%), Query Frame = 2
Query:    2 KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 340
            KV  V+YPGL SHPEH +A +QMTGFGGVVSFE+DGD+  TIKF+D+LKIPYIAPSFGGCESIVDQPAIMSYWDL Q ERLKYGI DNLVRFSFGVEDFED+KAD+LQAL AI
Sbjct:  451 KVSHVYYPGLPSHPEHELAKRQMTGFGGVVSFEIDGDIETTIKFVDSLKIPYIAPSFGGCESIVDQPAIMSYWDLPQEERLKYGIKDNLVRFSFGVEDFEDVKADILQALEAI 563          
BLAST of CX294765 vs. ExPASy Swiss-Prot
Match: CGL_DICDI (Cystathionine gamma-lyase OS=Dictyostelium discoideum GN=cysA PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.003e-23
Identity = 51/110 (46.36%), Postives = 74/110 (67.27%), Query Frame = 2
Query:    2 KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 331
            KV+RV YPGL SHP+H I  +QM G+GG+V F V G +  +  F++ +K+  +A S GG ES+++ P++M++  +   ER K GI D L+R S G+ED  DL AD+ QAL
Sbjct:  275 KVERVIYPGLPSHPQHEICKRQMKGYGGMVVFFVKGSIDQSRSFLENIKLFALAESLGGVESLIELPSVMTHASVPAEERAKLGISDTLIRLSVGIEDINDLLADISQAL 384          
BLAST of CX294765 vs. ExPASy Swiss-Prot
Match: METC_COXBU (Cystathionine beta-lyase OS=Coxiella burnetii GN=metC PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.980e-23
Identity = 52/110 (47.27%), Postives = 74/110 (67.27%), Query Frame = 2
Query:    2 KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 331
            KVKRV+YPGL SHP+H IA +QM  FGG++S E+  DL  T K ++  ++  +A S GG ES+++ PAIM++  + Q+ER K GI D  +R S G+E   DL+ D+  AL
Sbjct:  278 KVKRVYYPGLPSHPQHSIAKKQMRYFGGMISVELKCDLNETKKVLERCQLFTLAESLGGVESLIEHPAIMTHASIPQAERQKLGITDGFIRLSVGIEAITDLRHDLEAAL 387          
BLAST of CX294765 vs. ExPASy Swiss-Prot
Match: METZ_PSEAE (O-succinylhomoserine sulfhydrylase OS=Pseudomonas aeruginosa GN=metZ PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.569e-21
Identity = 48/112 (42.86%), Postives = 74/112 (66.07%), Query Frame = 2
Query:    5 VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 340
            ++RV+Y GL SHP+H +A +Q +GFG VVSF+V G   A  +FIDA ++  I  + G  ++ +  PA  S+  LS  +R + GI D+L+R + G+ED +DLKAD+ + L A+
Sbjct:  292 IERVYYAGLPSHPQHELARRQQSGFGAVVSFDVKGGRDAAWRFIDATRMVSITTNLGDTKTTIAHPATTSHGRLSPEDRARAGIGDSLIRVAVGLEDLDDLKADMARGLAAL 403          
BLAST of CX294765 vs. ExPASy Swiss-Prot
Match: MEGL_PSEPU (Methionine gamma-lyase OS=Pseudomonas putida GN=mdeA PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.771e-20
Identity = 50/112 (44.64%), Postives = 74/112 (66.07%), Query Frame = 2
Query:    2 KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 337
            +V+ +HYPGL S P++ +A QQM+  GG+++FE+ G + A  +F++AL++   A S G  ES+   PA M++   +  ER  YGI + LVR S G+ED +DL ADV QAL A
Sbjct:  285 QVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKA 396          
BLAST of CX294765 vs. ExPASy Swiss-Prot
Match: METC_LACLM (Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metC PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.313e-20
Identity = 49/109 (44.95%), Postives = 71/109 (65.14%), Query Frame = 2
Query:    5 VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 331
            V +V+YPGL SHP H IA +QM+ FGG++SFE+  D  A   F++ L    +A S GG ES+++ PA+M++  + +  R + GI D L+R S GVE  EDL  D+ +AL
Sbjct:  270 VSKVYYPGLNSHPGHEIAKKQMSAFGGMISFELT-DENAVKDFVENLSYFTLAESLGGVESLIEVPAVMTHASIPKELREEIGIKDGLIRLSVGVEAIEDLLTDIKEAL 377          
BLAST of CX294765 vs. ExPASy Swiss-Prot
Match: METC_LACLA (Cystathionine beta-lyase OS=Lactococcus lactis subsp. lactis GN=metC PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.313e-20
Identity = 49/109 (44.95%), Postives = 71/109 (65.14%), Query Frame = 2
Query:    5 VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 331
            V +V+YPGL SHP H IA +QM+ FGG++SFE+  D  A   F++ L    +A S GG ES+++ PA+M++  + +  R + GI D L+R S GVE  EDL  D+ +AL
Sbjct:  270 VSKVYYPGLNSHPGHEIAKKQMSAFGGMISFELT-DENAVKDFVENLSYFTLAESLGGVESLIEVPAVMTHASIPKELREEIGIKDGLIRLSVGVEAIEDLLTDIKEAL 377          
BLAST of CX294765 vs. ExPASy Swiss-Prot
Match: CGL_PIG (Cystathionine gamma-lyase OS=Sus scrofa GN=CTH PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.313e-20
Identity = 50/111 (45.05%), Postives = 73/111 (65.77%), Query Frame = 2
Query:    5 VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 337
            V++V YPGL SHP+H +A +Q TG  G++SF + G L     F+ +LK+  +A S GG ES+ + PAIM++  + +S+R   GI D L+R S G+ED +DL  D+ QAL A
Sbjct:  286 VEKVIYPGLPSHPQHELAKRQCTGCPGMISFYIKGSLHHAETFLKSLKLFTLAESLGGYESLAELPAIMTHSSVPKSDREVLGIRDTLIRLSVGLEDKQDLMDDLDQALKA 396          
BLAST of CX294765 vs. ExPASy Swiss-Prot
Match: CGL2_CAEEL (Putative cystathionine gamma-lyase 2 OS=Caenorhabditis elegans GN=cth-2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.021e-20
Identity = 46/110 (41.82%), Postives = 71/110 (64.55%), Query Frame = 2
Query:    2 KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 331
            +++ V YP L SHP+H +  +Q  G  G++SF + G+L  +  F+ ALK+  +A S GG ES+ + P+IM++  +    R+  GI DNL+R S G+ED +DL AD+ QAL
Sbjct:  276 RIESVLYPALPSHPQHEVHEKQTKGMSGMISFYLKGELQESRAFLSALKVFTLAESLGGYESLAELPSIMTHASVPAETRIVLGITDNLIRISVGIEDLDDLVADLDQAL 385          
BLAST of CX294765 vs. ExPASy Swiss-Prot
Match: CGL_BOVIN (Cystathionine gamma-lyase OS=Bos taurus GN=CTH PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.153e-20
Identity = 50/112 (44.64%), Postives = 73/112 (65.18%), Query Frame = 2
Query:    2 KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 337
            +V++V YPGL SHP+H +A +Q TG  G+V+F + G L     F+  LK+  +A S GG ES+ + PAIM++  + +S+R   GI D L+R S G+ED +DL  D+ QAL A
Sbjct:  285 QVEKVIYPGLPSHPQHELAKRQCTGCPGMVTFYIKGSLQHAETFLQNLKLFTLAESLGGYESLAELPAIMTHASVPKSDREVLGISDTLIRLSVGLEDKQDLLDDLDQALKA 396          
The following BLAST results are available for this feature:
BLAST of CX294765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
METB_ARATH5.645e-5182.30Cystathionine gamma-synthase, chloroplastic OS=Ara... [more]
CGL_DICDI1.003e-2346.36Cystathionine gamma-lyase OS=Dictyostelium discoid... [more]
METC_COXBU4.980e-2347.27Cystathionine beta-lyase OS=Coxiella burnetii GN=m... [more]
METZ_PSEAE3.569e-2142.86O-succinylhomoserine sulfhydrylase OS=Pseudomonas ... [more]
MEGL_PSEPU1.771e-2044.64Methionine gamma-lyase OS=Pseudomonas putida GN=md... [more]
METC_LACLM2.313e-2044.95Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]
METC_LACLA2.313e-2044.95Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]
CGL_PIG2.313e-2045.05Cystathionine gamma-lyase OS=Sus scrofa GN=CTH PE=... [more]
CGL2_CAEEL3.021e-2041.82Putative cystathionine gamma-lyase 2 OS=Caenorhabd... [more]
CGL_BOVIN5.153e-2044.64Cystathionine gamma-lyase OS=Bos taurus GN=CTH PE=... [more]

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Properties
Property NameValue
Genbank descriptionC05055F10SK FlavSen1 Citrus clementina cDNA clone C05055F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294765 ID=CX294765; Name=CX294765; organism=Citrus clementina; type=EST; length=393bp
AAAGGTGAAGCGCGTTCACTATCCAGGCTTGAAGAGTCATCCTGAGCATC
ACATTGCCACACAGCAAATGACTGGTTTTGGTGGGGTAGTTAGTTTTGAG
GTGGATGGAGACCTAACGGCCACCATAAAATTTATTGATGCCTTGAAAAT
CCCATATATTGCTCCATCCTTCGGTGGCTGTGAGAGCATTGTTGATCAGC
CAGCTATAATGTCGTATTGGGACCTTAGCCAATCGGAGAGGCTCAAGTAT
GGGATTATGGATAACTTGGTTCGCTTTAGCTTTGGAGTGGAAGATTTTGA
AGATTTGAAGGCAGATGTACTTCAGGCCCTGCATGCCATATAGAAGTGTT
TTTTGTGTTTCACCTTCGCATAATTTTCATTTTACTTTTCCTA
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