CX294773

Overview
NameCX294773
Unique NameCX294773
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length569
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7750 contig Ccv1_Contig7750:14..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294773 vs. ExPASy Swiss-Prot
Match: CAF2P_ARATH (CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana GN=At1g23400 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 9.801e-56
Identity = 99/139 (71.22%), Postives = 112/139 (80.58%), Query Frame = 1
Query:  151 RKPKSRPNPAFKLPHRHTRYYKPVNPGVISSDGDRGVTIGESGVSYRLPGAPFEFQYSYTETPQAKPLAIREPAFLPFGPPTMPRPWTGKQPLXXXXXXIPLFDSFNPPLPGXKGVKHVEMPGPFPLGKYPQEGKTREE 567
            +KP+S  NPA KLPH  TRYYKPV  GVISSDGDR + IG+SGVSY+LPGAPFEFQ+SY+ETP+ KP+ IREPAF+PF PPTMPRPWTGK PL      IPLFDSFNPP  G  GVK+VEMPGP P G+YP+EG  REE
Sbjct:   61 KKPQS--NPALKLPHHRTRYYKPVKEGVISSDGDRTILIGDSGVSYQLPGAPFEFQFSYSETPKVKPVGIREPAFMPFAPPTMPRPWTGKAPLKKSKKKIPLFDSFNPPPAGKSGVKYVEMPGPLPFGRYPKEGMNREE 197          
BLAST of CX294773 vs. ExPASy Swiss-Prot
Match: CAF1P_ORYSJ (CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0495900 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.576e-29
Identity = 61/105 (58.10%), Postives = 75/105 (71.43%), Query Frame = 1
Query:  256 GVTIGESGVSYRLPGAPFEFQYSYTETPQAKPLAIREPAFLPFGPPTMPRPWTGKQPLXXXXXXIPLFDSFNPPLPGXKGVKHVEMPGPFPLGKYPQ-EGKTREE 567
            GV + E G++Y L GAPFEFQYSYTETP+A+P+A+RE  FLPFGP   PRPWTG++PL      +P FDSF  P PG KGVK V+ PGPF  G  P+ +  +REE
Sbjct:   75 GVRVTERGLAYHLDGAPFEFQYSYTETPRARPVALREAPFLPFGPEVTPRPWTGRKPLPKSRKELPEFDSFMLPPPGKKGVKPVQSPGPFLAGTEPRYQAASREE 179          
BLAST of CX294773 vs. ExPASy Swiss-Prot
Match: CAF1P_MAIZE (CRS2-associated factor 1, chloroplastic OS=Zea mays GN=CAF1 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.510e-29
Identity = 59/105 (56.19%), Postives = 75/105 (71.43%), Query Frame = 1
Query:  256 GVTIGESGVSYRLPGAPFEFQYSYTETPQAKPLAIREPAFLPFGPPTMPRPWTGKQPLXXXXXXIPLFDSFNPPLPGXKGVKHVEMPGPFPLGKYPQ-EGKTREE 567
            GV + + G+SYRL GAPFEFQYSYTE P+A+P+A+RE  F+PFGP   PRPWTG++PL      +P FDSF  P PG KGVK V+ PGPF  G  P+ +  +RE+
Sbjct:   75 GVRVTDRGISYRLDGAPFEFQYSYTEAPRARPVALREAPFMPFGPEATPRPWTGRKPLPKSRKELPEFDSFVLPAPGKKGVKPVQSPGPFLAGMEPRYQSVSRED 179          
BLAST of CX294773 vs. ExPASy Swiss-Prot
Match: CAF2P_MAIZE (CRS2-associated factor 2, chloroplastic OS=Zea mays GN=CAF2 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.475e-27
Identity = 57/99 (57.58%), Postives = 68/99 (68.69%), Query Frame = 1
Query:  172 NPAFKLPHRHTRYYKPVNPGVISSDGD-------------RGVTIGESGVSYRLPGAPFEFQYSYTETPQAKPLAIREPAFLPFGPPTMPRPWTGKQPL 429
            NPAF+  H  T Y KPV P   + +G+             R V +G SG+S+RLPGAPF+FQ+SY+E P+A PLAIREPAFLPF PPTMPRPWTGK PL
Sbjct:   74 NPAFRAAHLRTAYRKPVPPAAAAGEGEALLAADPTDAASGRAVVVGPSGLSFRLPGAPFDFQFSYSEAPRAPPLAIREPAFLPFAPPTMPRPWTGKAPL 172          
BLAST of CX294773 vs. ExPASy Swiss-Prot
Match: CAF2P_ORYSJ (CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0323300 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.286e-27
Identity = 56/99 (56.57%), Postives = 69/99 (69.70%), Query Frame = 1
Query:  172 NPAFKLPHRHTRYYKPVNPGVISSDGD-------------RGVTIGESGVSYRLPGAPFEFQYSYTETPQAKPLAIREPAFLPFGPPTMPRPWTGKQPL 429
            NPAF+ PH  T Y KPV P   + +G+             R V +G SG+S+RLPGAPF+F++SY+E P+A P+AIREPAFLPF PPTMPRPWTGK PL
Sbjct:   70 NPAFRAPHLRTAYRKPVPPVAAAGEGEALLAADASDAADGRAVVVGPSGLSFRLPGAPFDFRFSYSECPRAPPVAIREPAFLPFAPPTMPRPWTGKAPL 168          
BLAST of CX294773 vs. ExPASy Swiss-Prot
Match: CAF1P_ARATH (CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana GN=At2g20020 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 3.633e-26
Identity = 67/152 (44.08%), Postives = 87/152 (57.24%), Query Frame = 1
Query:  160 KSRPNPAF----KLPHRHTRYYKPVN--------PGVISS----DGDRGVTIGESGVSYRLPGAPFEFQYSYTETPQAKPLAIREPAFLPFGPPTMPRPWTGKQPLXXXXXXIPLFDSFNPPLPGXKGVKHVEMPGPFPLGKYPQEGKTREE 567
            +SR  P+      +P R ++Y KP +        P V  S    D    V + E G++Y + GAPFEF+YSYTETP+ KPL +REPA+ PFGP TM RPWTG+ PL         FDSF  P  G KG+K V+ PGPF  G  P+   ++EE
Sbjct:   86 RSRGTPSLPSARSIPGRRSKYSKPDSGPNRPKNKPRVPDSPPQLDAKPEVKLSEDGLTYVINGAPFEFKYSYTETPKVKPLKLREPAYAPFGPTTMGRPWTGRAPLPQSQKTPREFDSFRLPPVGKKGLKPVQKPGPFRPGVGPRYVYSKEE 237          
The following BLAST results are available for this feature:
BLAST of CX294773 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CAF2P_ARATH9.801e-5671.22CRS2-associated factor 2, chloroplastic OS=Arabido... [more]
CAF1P_ORYSJ1.576e-2958.10CRS2-associated factor 1, chloroplastic OS=Oryza s... [more]
CAF1P_MAIZE3.510e-2956.19CRS2-associated factor 1, chloroplastic OS=Zea may... [more]
CAF2P_MAIZE1.475e-2757.58CRS2-associated factor 2, chloroplastic OS=Zea may... [more]
CAF2P_ORYSJ3.286e-2756.57CRS2-associated factor 2, chloroplastic OS=Oryza s... [more]
CAF1P_ARATH3.633e-2644.08CRS2-associated factor 1, chloroplastic OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionC05055G07SK FlavSen1 Citrus clementina cDNA clone C05055G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294773 ID=CX294773; Name=CX294773; organism=Citrus clementina; type=EST; length=569bp
GAAACGGAACTTCAAATGCGGATTCTAGCTTCGCTACCAGACGGTAACCT
CTTCTCATCCCTTCCGTCAACTCCACCTCCAAGGGACCCCAGGTTGCCGC
CACCCTCCACGCCACCACCCATCCCCGTTCCTAAATATCCCCCAAAAGAA
CGAAAACCCAAATCTAGACCCAATCCGGCCTTCAAGCTCCCTCACCGTCA
TACACGCTACTACAAGCCCGTCAATCCGGGAGTCATCTCATCAGATGGCG
ACCGCGGTGTTACCATCGGTGAGTCCGGCGTATCCTATCGGCTACCGGGG
GCTCCATTCGAGTTCCAATACAGTTACACAGAGACTCCACAAGCTAAACC
CTTGGCAATCCGCGAACCGGCTTTCTTGCCTTTCGGTCCACCCACGATGC
CGCGGCCTTGGACCGGAAAACAACCGTTGAAAAAGTCTAAGAAAAAAATC
CCGCTCTTTGACTCGTTTAACCCGCCGCTGCCCGGCANAAAGGGCGTGAA
ACACGTGGAAATGCCGGGGCCGTTTCCTCTCGGGAAGTATCCACAAGAAG
GGAAGACGAGAGAGGAGAT
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