CX294776

Overview
NameCX294776
Unique NameCX294776
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6933 contig Ccv1_Contig6933:10..556. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294776 vs. ExPASy Swiss-Prot
Match: CSLCC_ARATH (Probable xyloglucan glycosyltransferase 12 OS=Arabidopsis thaliana GN=CSLC12 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.537e-28
Identity = 68/131 (51.91%), Postives = 87/131 (66.41%), Query Frame = 1
Query:  169 FVWRKKKSHAHRVGGTPVVIKMENPN-WSMVELEAPSEEDFLRAEHHXXXXXXXXXXXXXQLTWVLLLKAHKAAGCLTSIASAFFSLGSLVRRRVAAXRTDQPPTSADTHEIQK----LRTRFFYSCIKLF 546
            F W  K ++ +   GTPVV+KMENPN WSMVELE+PS +DFL   H              QLTWVLLLKAH+AAGCLTS+ SA F+LG+ VRRR+AA RTD   +S+    +QK     +++ FYSC+K+F
Sbjct:    5 FEWWAKGNNNNTRKGTPVVVKMENPNNWSMVELESPSHDDFLVRTHEKSRNKNAR-----QLTWVLLLKAHRAAGCLTSLGSALFALGTAVRRRIAAGRTDIEISSSGVGSLQKQNHTKKSKLFYSCLKVF 130          
BLAST of CX294776 vs. ExPASy Swiss-Prot
Match: CSLCA_ORYSJ (Putative xyloglucan glycosyltransferase 10 OS=Oryza sativa subsp. japonica GN=CSLC10 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.174e-17
Identity = 48/91 (52.75%), Postives = 58/91 (63.74%), Query Frame = 1
Query:  196 AHRVGGTPVVIKMENPNWSMVELEAPSEEDFLRAEHHXXXXXXXXXXXXXQLTWVLLLKAHKAAGCLTSIASAFFSLGSLVRRRVAAXRTD 468
            A   GGTPVV+KM+NPNWS+ E++A   E FL                  Q+TWVLLLKAH+AAGCL  +ASA  +LG+  RRRVAA RTD
Sbjct:   17 AAAAGGTPVVVKMDNPNWSISEIDADGGE-FLAGGRRRGRGKNAK-----QITWVLLLKAHRAAGCLAWLASAAVALGAAARRRVAAGRTD 101          
BLAST of CX294776 vs. ExPASy Swiss-Prot
Match: CSLCA_ORYSI (Putative xyloglucan glycosyltransferase 10 OS=Oryza sativa subsp. indica GN=CSLC10 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.174e-17
Identity = 48/91 (52.75%), Postives = 58/91 (63.74%), Query Frame = 1
Query:  196 AHRVGGTPVVIKMENPNWSMVELEAPSEEDFLRAEHHXXXXXXXXXXXXXQLTWVLLLKAHKAAGCLTSIASAFFSLGSLVRRRVAAXRTD 468
            A   GGTPVV+KM+NPNWS+ E++A   E FL                  Q+TWVLLLKAH+AAGCL  +ASA  +LG+  RRRVAA RTD
Sbjct:   17 AAAAGGTPVVVKMDNPNWSISEIDADGGE-FLAGGRRRGRGKNAK-----QITWVLLLKAHRAAGCLAWLASAAVALGAAARRRVAAGRTD 101          
BLAST of CX294776 vs. ExPASy Swiss-Prot
Match: CSLC7_ORYSJ (Probable xyloglucan glycosyltransferase 7 OS=Oryza sativa subsp. japonica GN=CSLC7 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.180e-15
Identity = 53/112 (47.32%), Postives = 63/112 (56.25%), Query Frame = 1
Query:  208 GGTPVVIKMENPNWSMVELEAPSEEDFLRAEHHXXXXXXXXXXXXXQLTWVLLLKAHKAAGCLTSIASAFFSLGSLVRRRVAAXRTDQPPTSADTHEIQKLRTRFFYSCIKL 543
            GGTPVV+KMENPNWS+ E+EA        A                Q+TWVLLLKAH+AAG LT  ASA  ++ S  RRRVA+ RTD     A   E   LR R  Y CI++
Sbjct:   18 GGTPVVVKMENPNWSISEVEAAEVAPGSPA----GAGKAGRGKNARQITWVLLLKAHRAAGRLTGAASAALAVASAARRRVASGRTD---ADAAPGESTALRAR-SYGCIRV 121          
BLAST of CX294776 vs. ExPASy Swiss-Prot
Match: CSLC1_ORYSJ (Probable xyloglucan glycosyltransferase 1 OS=Oryza sativa subsp. japonica GN=CSLC1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.105e-13
Identity = 48/105 (45.71%), Postives = 59/105 (56.19%), Query Frame = 1
Query:  211 GTPVVIKMENPNWSMVELEAPSEEDFLRAEHHXXXXXXXXXXXXXQLTWVLLLKAHKAAGCLTSIASAFFSLGSLVRRRVAAXRTD-QPPTSADTHEIQKLRTRF 522
            GTPVV+KME+P W++ E+EA +      A                Q+TWVLLLKAH+AAG LT  ASA  S+ +  RRRVAA RTD     +A   E   LR RF
Sbjct:   14 GTPVVVKMESPEWAISEVEAGAAAPGSPAA----GGKAGRGKNARQITWVLLLKAHRAAGKLTGAASAALSVAAAARRRVAAGRTDSDDAAAAPPGESPALRARF 114          
BLAST of CX294776 vs. ExPASy Swiss-Prot
Match: CSLC8_ARATH (Probable xyloglucan glycosyltransferase 8 OS=Arabidopsis thaliana GN=CSLC8 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.198e-13
Identity = 50/115 (43.48%), Postives = 67/115 (58.26%), Query Frame = 1
Query:  211 GTPVVIKMENPNWSMVELEAPSEEDFLRAEHHXXXXXXXXXXXXXQLTWVLLLKAHKAAGCLTSIASAFFSLGSLVRRRVAAXRTDQPPTSADTHEI--QKL-RTRFFYSCIKLF 546
            GTPVV+KMENPN+S+VE+E P +  F   E               Q+TWVLLLKAHKA GCLT +A+ F+SL   V+RR++            TH +  ++L R  + +S IKLF
Sbjct:   18 GTPVVVKMENPNYSIVEVEEP-DSAFQPMEKSRGKNAK-------QVTWVLLLKAHKAVGCLTWVATVFWSLLGSVKRRLSF-----------THPLGSERLGRDGWLFSAIKLF 113          
BLAST of CX294776 vs. ExPASy Swiss-Prot
Match: CSLC5_ARATH (Probable xyloglucan glycosyltransferase 5 OS=Arabidopsis thaliana GN=CSLC5 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.198e-13
Identity = 47/115 (40.87%), Postives = 68/115 (59.13%), Query Frame = 1
Query:  211 GTPVVIKMENPNWSMVELEAPSEEDFLRAEHHXXXXXXXXXXXXXQLTWVLLLKAHKAAGCLTSIASAFFSLGSLVRRRVAAXRTDQPPTSADTHEI--QKL-RTRFFYSCIKLF 546
            GTPVV+KMENPN+S+VE++ P +  F   E               Q+TWVLLLKAH+A GCLT +A+ F+SL   +++R++            TH +  +KL R R+ ++ IKLF
Sbjct:   18 GTPVVVKMENPNYSVVEIDGP-DSAFRPVEKSRGKNAK-------QVTWVLLLKAHRAVGCLTWLATVFWSLLGAIKKRLSF-----------THPLGSEKLGRDRWLFTAIKLF 113          
BLAST of CX294776 vs. ExPASy Swiss-Prot
Match: CSLC3_ORYSJ (Probable xyloglucan glycosyltransferase 3 OS=Oryza sativa subsp. japonica GN=CSLC3 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.753e-11
Identity = 45/130 (34.62%), Postives = 66/130 (50.77%), Query Frame = 1
Query:  142 MAPPSSTESFVWRKKKSHAHRVGGTPVVIKMENPNWSMVELEAP---SEEDFLRAEHHXXXXXXXXXXXXXQLTWVLLLKAHKAAGCLTSIASAFFSLGSLVRRRVAAXRTDQPPTSADTHEIQKLRTRF 522
            MAPP +T S  W   K       GTPVV+KM+NP +S+VE++ P   +  +  R ++              QLTWVLLL+AH+A GC+  +A+ F+++   V RRV   R       A+     +   RF
Sbjct:    1 MAPPPNTYSESWWGGKEER----GTPVVVKMDNP-YSLVEIDGPGMAAPSEKARGKN------------AKQLTWVLLLRAHRAVGCVAWLAAGFWAVLGAVNRRVRRSRDADAEPDAEASGRGRAMLRF 113          
The following BLAST results are available for this feature:
BLAST of CX294776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CSLCC_ARATH3.537e-2851.91Probable xyloglucan glycosyltransferase 12 OS=Arab... [more]
CSLCA_ORYSJ8.174e-1752.75Putative xyloglucan glycosyltransferase 10 OS=Oryz... [more]
CSLCA_ORYSI8.174e-1752.75Putative xyloglucan glycosyltransferase 10 OS=Oryz... [more]
CSLC7_ORYSJ1.180e-1547.32Probable xyloglucan glycosyltransferase 7 OS=Oryza... [more]
CSLC1_ORYSJ1.105e-1345.71Probable xyloglucan glycosyltransferase 1 OS=Oryza... [more]
CSLC8_ARATH4.198e-1343.48Probable xyloglucan glycosyltransferase 8 OS=Arabi... [more]
CSLC5_ARATH4.198e-1340.87Probable xyloglucan glycosyltransferase 5 OS=Arabi... [more]
CSLC3_ORYSJ8.753e-1134.62Probable xyloglucan glycosyltransferase 3 OS=Oryza... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05055G10SK FlavSen1 Citrus clementina cDNA clone C05055G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294776 ID=CX294776; Name=CX294776; organism=Citrus clementina; type=EST; length=547bp
GGGTCTCCTCGTCCTTCTTCCACGCGTCTCCTCCTTTCTTCTTCATTACA
ATGAGATCGGAGTTGTAGGGAGTTTTCTTAAACTCGGTTGTCTTGTAAGA
AGAGTGCGTTCTTCGGTTTAGTTTGTTTGGAAGTGAATCAGATGGCTCCT
CCTTCTTCGACGGAGTCGTTCGTCTGGAGGAAGAAGAAGAGCCACGCTCA
CAGGGTTGGCGGCACTCCCGTCGTCATCAAAATGGAGAACCCCAACTGGT
CTATGGTCGAACTCGAAGCTCCTTCCGAAGAAGATTTCCTTAGAGCCGAA
CACCACACCGCCGCCGCCAACAAAACTCGCAACAGAAACGCCAAGCAGCT
CACGTGGGTTCTCTTGTTGAAGGCCCACAAGGCCGCCGGCTGTCTCACCT
CCATTGCCTCCGCATTCTTCTCCCTCGGCTCCCTCGTTCGACGCCGCGTC
GCCGCTGNCCGCACCGACCAGCCACCGACCTCCGCCGACACCCACGAAAT
CCAGAAACTCCGCACCAGGTTCTTCTACTCGTGCATCAAGCTCTTCC
back to top