CX294777

Overview
NameCX294777
Unique NameCX294777
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length640
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294777_ssr528 microsatellite CX294777_ssr528:528..542. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10233 contig Ccv1_Contig10233:23..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294777 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.453e-19
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 2
Query:  305 IINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 445
            IINDRETGRSRGFGFVTF+DEKSMRDAIEGMNGQ LDGRNITVNEAQ
Sbjct:   37 IINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQ 83          
BLAST of CX294777 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.706e-18
Identity = 43/51 (84.31%), Postives = 48/51 (94.12%), Query Frame = 2
Query:  293 MPKSIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 445
            +   IINDRETGRSRGFGFVTF+DEKSM+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:   35 LDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of CX294777 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.535e-18
Identity = 43/47 (91.49%), Postives = 47/47 (100.00%), Query Frame = 2
Query:  305 IINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 445
            IINDRETGRSRGFGFVTF+DEKSM+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:   39 IINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of CX294777 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.875e-18
Identity = 42/47 (89.36%), Postives = 47/47 (100.00%), Query Frame = 2
Query:  305 IINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 445
            IINDRETGRSRGFGFVTF+DEK+M+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:   39 IINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of CX294777 vs. ExPASy Swiss-Prot
Match: GRP1_SORBI (Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.347e-17
Identity = 38/51 (74.51%), Postives = 42/51 (82.35%), Query Frame = 2
Query:  293 MPKSIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 445
            +   II DRET RSRGFGFVTF  E++MR AIEGMNG+ LDGRNITVNEAQ
Sbjct:   14 LESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQ 64          

HSP 2 Score: 31.187 bits (69), Expect = 2.347e-17
Identity = 12/22 (54.55%), Postives = 18/22 (81.82%), Query Frame = 1
Query:  115 SSLHEAFGAYGDILESKVRLNQ 180
            +SLH AF  YG++LESK+ L++
Sbjct:    1 NSLHSAFSTYGEVLESKIILDR 22          
BLAST of CX294777 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.308e-16
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 2
Query:  305 IINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 445
            IINDRETGRSRGFGFVTF+DEKSM+DAI+ MNG+ LDGR ITVNEAQ
Sbjct:   37 IINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQ 83          
BLAST of CX294777 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.626e-16
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 2
Query:  305 IINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 445
            IINDRE+GRSRGFGFVTF+DEK+MRDAIE MNG+ LDGR ITVNEAQ
Sbjct:   37 IINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83          
BLAST of CX294777 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.149e-15
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 2
Query:  305 IINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 445
            II DRETGRSRGFGFVTF  +++MR AIE MNGQ+LDGRNITVNEAQ
Sbjct:   37 IITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQ 83          
BLAST of CX294777 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.371e-14
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 2
Query:  293 MPKSIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 445
            +   +I DRETGRSRGFGFVTF  E SM DAIE MNG+ LDGRNITVN+AQ
Sbjct:   35 LDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQ 85          
BLAST of CX294777 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.371e-14
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 2
Query:  305 IINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 445
            +I DRETGRSRGFGFVTF  E+SM DAIE MNG+ LDGRNITVN+AQ
Sbjct:   39 VITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQ 85          
The following BLAST results are available for this feature:
BLAST of CX294777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
GRP1_DAUCA5.453e-1995.74Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
GRP1_SINAL2.706e-1884.31Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... [more]
GRP2_SINAL3.535e-1891.49Glycine-rich RNA-binding protein GRP2A OS=Sinapis ... [more]
GRP7_ARATH7.875e-1889.36Glycine-rich RNA-binding protein 7 OS=Arabidopsis ... [more]
GRP1_SORBI2.347e-1774.51Glycine-rich RNA-binding protein 1 (Fragment) OS=S... [more]
GRP10_BRANA3.308e-1685.11Glycine-rich RNA-binding protein 10 OS=Brassica na... [more]
GRP8_ARATH9.626e-1685.11Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]
GRP_HORVU8.149e-1580.85Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
GRPA_MAIZE2.371e-1472.55Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
GRP2_SORBI2.371e-1478.72Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]
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Properties
Property NameValue
Genbank descriptionC05055G11SK FlavSen1 Citrus clementina cDNA clone C05055G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294777 ID=CX294777; Name=CX294777; organism=Citrus clementina; type=EST; length=640bp
TAAGATTTTTCTTGTAATTTTTTCTTAGTCCCCATTTTAAGTTTTCTCCT
AATGGCTTCAGGCGATGTCGAGTTTAGGTGCTTCGTAGGCGGCCTGGCCT
GGGCCACCACTGACAGCTCTCTCCATGAGGCCTTCGGTGCTTACGGCGAT
ATCCTTGAATCGAAGGTCCGTTTGAACCAGATCCGACCCGATCCACGATT
CGGCTTGTTCTGATCTGTGATCTGTGTGCTCTGTGATCTGTTTCTGTTAC
TCTGTTACTGTTCTCTGTTACTACTGTTACTCTATTATTACTATGCCTAA
ATCGATAATTAACGATCGCGAGACTGGAAGATCCAGAGGATTTGGATTCG
TTACCTTCCGCGATGAGAAGTCGATGAGGGACGCGATCGAAGGCATGAAC
GGCCAGAATCTCGACGGCCGTAACATCACAGTCAACGAGGCCCAGTCCCG
CGGAAGCGGTGGCGGTGGCGGTGGTGGTTACGGAAGCCGCGGCGGTGGCG
GATATGGAGGTGGTGGACGCCGTGAAAGTGGTGGTGGTGGTGGATACGGT
GGGAGCCGCGGATACCGAGGTGGCGGTGGTGGAGGATATGGTGGCCGCCG
TGAAGGTGGTTACAGCCGTGATGGTGGATATGGGCGTGAT
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