CX294787

Overview
NameCX294787
Unique NameCX294787
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length591
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14253 contig Ccv1_Contig14253:53..643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294787 vs. ExPASy Swiss-Prot
Match: TSSC1_DANRE (Protein TSSC1 OS=Danio rerio GN=tssc1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.004e-21
Identity = 68/210 (32.38%), Postives = 110/210 (52.38%), Query Frame = 1
Query:   22 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS-TGES---YGAAIWQIPELY---------GQLNSPQ-LERIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLRS 591
            YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     EIW +S  P D+ + +T ++ T ES     AA+W++P  +            N+PQ LE +  LD  AH G + CVLW   G   +++S+ E ++ LW L  S+  A + S    +  G L + + G W P H+   +A   +++++ WDLRS
Sbjct:    9 YGLEFQARALTAQTAETDAIRFLVGTQSLKFDNQIHIIDFDDENNMINKSVLLHDAGEIWHISGSPADKAVLTTCYNKTSESRVLTCAAVWRMPPEWESGNHESPDDSSNNPQTLELLCHLDNSAH-GSMACVLWEPMGDGKRVISLAENHVLLWDLQESSAKATISSSATLEGKGQLKF-TAGKWSPHHNCTQLATANDTAIRGWDLRS 216          
BLAST of CX294787 vs. ExPASy Swiss-Prot
Match: TSSC1_DICDI (Protein tssc1 homolog OS=Dictyostelium discoideum GN=tssc1 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.236e-21
Identity = 64/213 (30.05%), Postives = 108/213 (50.70%), Query Frame = 1
Query:   22 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFST----------------------GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWS-LDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRS 591
            YGL  + R +S + A+ D   FL GT +L+EENE+ LL  +  G  + C  +F HP EI  ++SCPFD  +F +V++T                         + +++W+I E     +   +E +  L  H G I  +L   SG ++ ++S+D+ NI LWS +D  N+   +   +  G L  LS G+ +P+  N +A   + +++ WD R+
Sbjct:   14 YGLSQKTRALSHITAEADVNRFLVGTTALREENEIALLE-AKEGEGVRCLSIFPHPKEIHSITSCPFDSSLFFSVYNTSGGGNNNSNNTNNNDNTNNNTNNNDFKSSLWRINE-----SMDSIEELFELKGHTGIIKPILCDPSGSNNFIISLDDSNIRLWSKIDDQNEPTVI---KQFGNLSKLSVGSINPNISNQLATANDVNIKGWDFRN 217          
BLAST of CX294787 vs. ExPASy Swiss-Prot
Match: TSSC1_XENTR (Protein TSSC1 OS=Xenopus tropicalis GN=tssc1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.506e-21
Identity = 66/210 (31.43%), Postives = 107/210 (50.95%), Query Frame = 1
Query:   22 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYG----AAIWQIP-ELYG---------QLNSPQLERIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLRS 591
            YGL++QAR ++   A+TD   FL GT SL+ +N++H++        +    L  H  EIW +S+ P D+ + +T ++          AA+W+IP EL G           N+  LE +  LD  AH G + CV W   G   KL+S+ +  + +W L  S+  + + S    +  G L + S G W P H+   VA   +++++ WD+RS
Sbjct:    9 YGLEFQARALAAQTAETDAIRFLVGTQSLRYDNQIHVIDFDDENNIINKNILLHHAGEIWQISASPADRNVLATCYNKISDSKVLTCAAVWRIPKELQGGNHESPDDTSSNAQALELLCHLDNTAH-GNMACVTWEPLGDGKKLLSLADNYLMIWDLQESSTKSVLSSSVTLEGKGQLRFTS-GKWSPHHNCTQVATANDTAIRGWDIRS 216          
BLAST of CX294787 vs. ExPASy Swiss-Prot
Match: TSSC1_RAT (Protein TSSC1 OS=Rattus norvegicus GN=Tssc1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.498e-21
Identity = 66/209 (31.58%), Postives = 108/209 (51.67%), Query Frame = 1
Query:   22 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS-TGES---YGAAIWQIPELY--GQLNSPQ--------LERIAALD-AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLRS 591
            YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     EIW +S+ P D+ + +T ++ T +S     AA+W++P+    G   SP+        LE +  LD    G + CV+W   G   K++S+ + +I LW L  S+  A + S    +  G L + S G W P H+   VA   +++++ WD RS
Sbjct:    9 YGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQAGEIWHISASPADKGVLATCYNKTSDSRVQACAAVWRMPKELESGSHESPEDPASTAQTLELLCHLDNGAQGNVACVVWEPMGDGKKVISLADSHILLWDLQPSSSQAVLASSAALEGRGQLKFTS-GRWSPHHNCTQVATASDTTLRGWDTRS 216          
BLAST of CX294787 vs. ExPASy Swiss-Prot
Match: TSSC1_XENLA (Protein TSSC1 OS=Xenopus laevis GN=tssc1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.110e-20
Identity = 65/210 (30.95%), Postives = 107/210 (50.95%), Query Frame = 1
Query:   22 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS----TGESYGAAIWQIP-ELYG---------QLNSPQLERIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLRS 591
            YGL++QAR ++   A+TD   FL GT SL+ +N++H++        +    L  H  EIW + + P D+ + +T ++    +     AA+W+IP EL G           N+  LE +  LD  AH G + CV W   G   KL+S+ +  + +W L  S+  + + S    +  G L + S G W P H+   VA   +++++ WD+RS
Sbjct:    9 YGLEFQARALTAQTAETDAIRFLVGTQSLRYDNQIHVIDFDDENNIINKNVLLHHAGEIWQIGASPADRNVLATCYNKISDSKVMTCAAVWRIPKELQGGNHESPDDTSSNAQSLELLCHLDSTAH-GNMACVTWEPLGDGKKLLSLADNYLLIWDLQESSTKSVLSSSATLEGKGQLRFTS-GKWSPHHNCTQVATANDTAIRGWDIRS 216          
BLAST of CX294787 vs. ExPASy Swiss-Prot
Match: TSSC1_HUMAN (Protein TSSC1 OS=Homo sapiens GN=TSSC1 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.110e-20
Identity = 69/210 (32.86%), Postives = 109/210 (51.90%), Query Frame = 1
Query:   22 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS-TGES---YGAAIWQIPELY--GQLNSPQ--------LERIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS---SGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLRS 591
            YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     EIW +S+ P D+ + +T ++ T +S     AA+W++P+    G   SP         LE +  LD  AH G + CV+W   G   K++S+ + +I LW L  S+  A + S  S    G L + S G W P H+   VA   +++++ WD RS
Sbjct:    9 YGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQAGEIWHISASPADRGVLTTCYNRTSDSKVLTCAAVWRMPKELESGSHESPDDSSSTAQTLELLCHLDNTAH-GNMACVVWEPMGDGKKIISLADNHILLWDLQESSSQAVLASSASLEGKGQLKFTS-GRWSPHHNCTQVATANDTTLRGWDTRS 216          
BLAST of CX294787 vs. ExPASy Swiss-Prot
Match: TSSC1_MOUSE (Protein TSSC1 OS=Mus musculus GN=Tssc1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.229e-20
Identity = 65/209 (31.10%), Postives = 108/209 (51.67%), Query Frame = 1
Query:   22 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS-TGES---YGAAIWQIPELY--GQLNSPQ--------LERIAALD-AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLRS 591
            YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     EIW +S+ P D+ + +T ++ T +S     AA+W++P+    G   SP         LE +  LD +  G + CV+W   G   K++S+ + +I LW L  S+  A + S    +  G L + + G W P H+   VA   +++++ WD RS
Sbjct:    9 YGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQAGEIWHISASPADKGVLATCYNKTTDSRVQACAAVWRMPKELESGSHESPDDPASTAQTLELLCHLDNSAQGNVACVVWEPMGDGKKVISLADSHILLWDLQPSSSQAVLASSATLEGRGQLKF-TAGRWSPHHNCTQVATASDTTLRGWDTRS 216          
BLAST of CX294787 vs. ExPASy Swiss-Prot
Match: TSSC1_GECJA (Protein TSSC1 OS=Gecko japonicus GN=TSSC1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.395e-20
Identity = 65/210 (30.95%), Postives = 108/210 (51.43%), Query Frame = 1
Query:   22 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS-TGES---YGAAIWQIPELY----------GQLNSPQLERIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLRS 591
            YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     EIW +S+ P D+ + +T +S T +S     AA+W++P+               N+  LE +  LD  AH G +  VLW   G   KL+S+ + ++ LW L  S+  A + +    +  G L + S G W P H+   VA   +++++ WD+R+
Sbjct:    9 YGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQVGEIWHISASPADKGVLATCYSKTSDSKVMTCAAVWRMPKELESGSHESPDDSSSNAQTLELLCHLDNTAH-GNMAGVLWEPMGDGKKLISLADNHLLLWDLQESSSKAVLSNSAALEGKGQLKFTS-GRWSPHHNCTQVATANDTAIRGWDIRT 216          
BLAST of CX294787 vs. ExPASy Swiss-Prot
Match: TSSC1_MACFA (Protein TSSC1 OS=Macaca fascicularis GN=TSSC1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.227e-19
Identity = 67/210 (31.90%), Postives = 108/210 (51.43%), Query Frame = 1
Query:   22 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS-TGES---YGAAIWQIPELY--GQLNSPQ--------LERIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS---SGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLRS 591
            YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     EIW +S+ P D+ + +T ++ T +S     AA+W++P+    G   SP         LE +  LD  AH   + CV+W   G   K++S+ + +I LW L  S+  A + S  S    G L + S G W P H+   VA   +++++ WD R+
Sbjct:    9 YGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQAGEIWHISASPADRGVLATCYNRTSDSKVLTCAAVWRMPKELESGSHESPDDSSSTAQTLELLCHLDNTAH-SNMACVVWEPMGDGKKIISLADNHILLWDLQESSSQAVLASSASLGGKGQLKFTS-GRWSPHHNCTQVATANDTTLRGWDTRT 216          
BLAST of CX294787 vs. ExPASy Swiss-Prot
Match: TSSC1_PONAB (Protein TSSC1 OS=Pongo abelii GN=TSSC1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.947e-18
Identity = 69/237 (29.11%), Postives = 111/237 (46.84%), Query Frame = 1
Query:   22 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS-------TGESYG------------------------AAIWQIPELY--GQLNSPQ--------LERIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS---SGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLRS 591
            YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     EIW +S+ P D+ + +T ++       + +S+G                        AA+W++P+    G   SP         LE +  LD  AH G + CV+W   G   K++S+ + +I LW L  S+  A + S  S    G L + S G W P H+   VA   +++++ WD RS
Sbjct:    9 YGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQVGEIWHISASPADRGVLATCYNRTFCCVLSLDSFGALGKSSAQLFIALATSSDSKVLTCAAVWRMPKELESGSHESPDDSSSTAQTLELLCHLDNTAH-GNMACVVWEPMGDGKKIISLADNHILLWDLQESSSQAVLASSASLEGKGQLKFTS-GRWSPHHNCTQVATANDTTLRGWDTRS 243          
The following BLAST results are available for this feature:
BLAST of CX294787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
TSSC1_DANRE1.004e-2132.38Protein TSSC1 OS=Danio rerio GN=tssc1 PE=2 SV=1[more]
TSSC1_DICDI2.236e-2130.05Protein tssc1 homolog OS=Dictyostelium discoideum ... [more]
TSSC1_XENTR6.506e-2131.43Protein TSSC1 OS=Xenopus tropicalis GN=tssc1 PE=2 ... [more]
TSSC1_RAT8.498e-2131.58Protein TSSC1 OS=Rattus norvegicus GN=Tssc1 PE=2 S... [more]
TSSC1_XENLA1.110e-2030.95Protein TSSC1 OS=Xenopus laevis GN=tssc1 PE=2 SV=1[more]
TSSC1_HUMAN1.110e-2032.86Protein TSSC1 OS=Homo sapiens GN=TSSC1 PE=1 SV=2[more]
TSSC1_MOUSE3.229e-2031.10Protein TSSC1 OS=Mus musculus GN=Tssc1 PE=1 SV=1[more]
TSSC1_GECJA9.395e-2030.95Protein TSSC1 OS=Gecko japonicus GN=TSSC1 PE=2 SV=... [more]
TSSC1_MACFA1.227e-1931.90Protein TSSC1 OS=Macaca fascicularis GN=TSSC1 PE=2... [more]
TSSC1_PONAB3.947e-1829.11Protein TSSC1 OS=Pongo abelii GN=TSSC1 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC05055H11SK FlavSen1 Citrus clementina cDNA clone C05055H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294787 ID=CX294787; Name=CX294787; organism=Citrus clementina; type=EST; length=591bp
GGAGGATCTTCAGGCATAGGCTATGGTCTCAAGTATCAAGCTAGATGCAT
ATCAGATGTCAAAGCAGACACGGATCACACCAGCTTCCTCACTGGAACTC
TCAGCCTCAAAGAAGAGAACGAGGTGCATTTGCTTCGGCTTTCATCCGGT
GGAACCGAGCTCATTTGCGAGGGTTTGTTCTCGCATCCTAACGAAATATG
GGACCTCAGTTCGTGTCCGTTCGATCAACGGATTTTCTCCACTGTTTTTT
CCACTGGTGAGTCATATGGGGCAGCAATATGGCAAATTCCAGAGTTGTAT
GGCCAGCTAAATTCACCTCAGTTGGAACGTATCGCCGCTCTTGATGCACA
TGTTGGTAAGATTAATTGCGTTCTTTGGTGGTCATCTGGAAGACATGATA
AATTGGTCAGCATAGACGAGGAAAATATTTTCTTGTGGAGCTTAGATTGT
TCAAACAAGAATGCCCAGGTACAATCTAAACAGTCATCTGGTATGCTGCA
TTATTTATCTGGTGGAGCATGGGATCCGCATGATGTAAATGCTGTCGCAG
CGACTTGTGAATCATCAGTCCAGTTTTGGGATCTCAGATCA
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