CX294798

Overview
NameCX294798
Unique NameCX294798
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length588
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10764 contig Ccv1_Contig10764:58..645. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294798 vs. ExPASy Swiss-Prot
Match: CDKF1_ARATH (Cyclin-dependent kinase F-1 OS=Arabidopsis thaliana GN=CDKF-1 PE=1 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 7.239e-73
Identity = 134/177 (75.71%), Postives = 152/177 (85.88%), Query Frame = 1
Query:    1 SWSIHTRPEIIAKYEILECVGSGAYSDVYKGRRLSDNLIVALKEVHDYQSAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLKTDLATVIAESKKKREGGGDRGISVGEIKRWMVQILCGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQARILLGNEFNAPDGNSQ 531
            SWSIHTRPEIIAKYEI E VGSGAY+DVY+ RRLSD LIVALKE+ DYQSAFREI+AL IL  SPNVVV+HEYFWRE+E+AVLVLEFL++DLA VI + K+K++  G  G SVGEIKRWM+QIL GVDACHRN IVHRDLKPGN+LI DDGVLKLADFGQARIL+ ++  A D N Q
Sbjct:    8 SWSIHTRPEIIAKYEIFERVGSGAYADVYRARRLSDGLIVALKEIFDYQSAFREIDALTILNGSPNVVVMHEYFWREEENAVLVLEFLRSDLAAVIRDGKRKKKVEGGDGFSVGEIKRWMIQILTGVDACHRNLIVHRDLKPGNMLISDDGVLKLADFGQARILMEHDIVASDENQQ 184          
BLAST of CX294798 vs. ExPASy Swiss-Prot
Match: CDKF1_ORYSJ (Cyclin-dependent kinase F-1 OS=Oryza sativa subsp. japonica GN=CDKF-1 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.350e-39
Identity = 89/165 (53.94%), Postives = 112/165 (67.88%), Query Frame = 1
Query:    1 SWSIHTRPEIIAKYEILECVGSGAYSDVYKGRRLSDNLIVALKEVHDYQSAFREIEALQILQNSPNVVVLHEYFWRED-EDAVLVLEFLKTDLATVIAESKKKREGGGDRGISVGEIKRWMVQILCGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQARIL 492
            SWSIH RP++ ++YE+L   GSGAY+DVY+GRR SD   VALKEVHD  SA RE +AL     S +VV L ++F   D +D VLVLE+L  DL+ V+  +   R       +   + KRWM+Q+L GV ACH   +VHRDLKP NLLI +DGVLK+AD GQARIL
Sbjct:   11 SWSIHGRPDVTSRYEVLGRAGSGAYADVYRGRRRSDGAPVALKEVHDAVSARREADALLAAAPSRHVVALLDHFPGGDHDDDVLVLEWLPLDLSAVVRAAAAARPS----ALPAAQRKRWMLQVLEGVAACHSAGVVHRDLKPANLLISEDGVLKVADLGQARIL 171          
BLAST of CX294798 vs. ExPASy Swiss-Prot
Match: CDKF1_ORYSI (Cyclin-dependent kinase F-1 OS=Oryza sativa subsp. indica GN=CDKF-1 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 6.839e-39
Identity = 89/165 (53.94%), Postives = 111/165 (67.27%), Query Frame = 1
Query:    1 SWSIHTRPEIIAKYEILECVGSGAYSDVYKGRRLSDNLIVALKEVHDYQSAFREIEALQILQNSPNVVVLHEYFWRED-EDAVLVLEFLKTDLATVIAESKKKREGGGDRGISVGEIKRWMVQILCGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQARIL 492
            SWSIH RP++ ++YE+L   GSGAY+DVY+GRR SD   VALKEVHD  SA RE +AL     S +VV L ++F   D +D VLVLE+L  DL+ V+  +   R           + KRWM+Q+L GV ACH   +VHRDLKP NLLI +DGVLK+AD GQARIL
Sbjct:   11 SWSIHGRPDVTSRYEVLGRAGSGAYADVYRGRRRSDGAPVALKEVHDAVSARREADALLAAAPSRHVVALLDHFPGGDHDDDVLVLEWLPLDLSAVVRAAAAARPSAP----PAAQRKRWMLQVLEGVAACHSAGVVHRDLKPANLLISEDGVLKVADLGQARIL 171          
BLAST of CX294798 vs. ExPASy Swiss-Prot
Match: KIN28_YEAST (Serine/threonine-protein kinase KIN28 OS=Saccharomyces cerevisiae GN=KIN28 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.431e-21
Identity = 65/152 (42.76%), Postives = 86/152 (56.58%), Query Frame = 1
Query:   58 VGSGAYSDVYKGRRLSDNLIVALKEVHDYQ-------SAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLKTDLATVIAESKKKREGGGDRGISVGEIKRWMVQILCGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQARIL 492
            VG G Y+ VY G + S    +A+KE+   +       SA RE++ LQ +Q+ PNV+ L + F   D +  LVLEFL TDL  VI +             +  +IK WM+  L GV  CHRN I+HRDLKP NLL   DG +K+ADFG AR +
Sbjct:   13 VGEGTYAVVYLGCQHSTGRKIAIKEIKTSEFKDGLDMSAIREVKYLQEMQH-PNVIELIDIFMAYD-NLNLVLEFLPTDLEVVIKDKSIL--------FTPADIKAWMLMTLRGVYHCHRNFILHRDLKPNNLLFSPDGQIKVADFGLARAI 154          
BLAST of CX294798 vs. ExPASy Swiss-Prot
Match: CDK2_XENLA (Cell division protein kinase 2 OS=Xenopus laevis GN=cdk2 PE=1 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 8.399e-21
Identity = 65/156 (41.67%), Postives = 89/156 (57.05%), Query Frame = 1
Query:   40 YEILECVGSGAYSDVYKGRRLSDNLIVALKEVH-DYQS------AFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLKTDLATVIAESKKKREGGGDRGISVGEIKRWMVQILCGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 486
            ++ +E +G G Y  VYK R      IVALK++  D ++      A REI  L+ L N PN+V L +    E++   LV EFL  DL       KK  +G    GIS+  +K ++ Q+L G+  CH + ++HRDLKP NLLI  DG +KLADFG AR
Sbjct:    4 FQKVEKIGEGTYGVVYKARNRETGEIVALKKIRLDTETEGVPSTAIREISLLKEL-NHPNIVKLLDVIHTENK-LYLVFEFLNQDL-------KKFMDGSNISGISLALVKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINSDGAIKLADFGLAR 150          
BLAST of CX294798 vs. ExPASy Swiss-Prot
Match: CDK20_PONAB (Cell division protein kinase 20 OS=Pongo abelii GN=CDK20 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.444e-20
Identity = 65/170 (38.24%), Postives = 94/170 (55.29%), Query Frame = 1
Query:   37 KYEILECVGSGAYSDVYKGRRLSDNLIVALKEVHDYQ-------SAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLKTDLATVIAESKKKREGGGDRGISVGEIKRWMVQILCGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQARILLGNEFNAPDGN 525
            +Y IL  +G GA+  V+K + +    IVALK+V   +        A REI+ALQ ++++  VV L   F       VL  EF+ +DLA V+  ++        R ++  ++K ++  +L GV  CH N IVHRDLKP NLLI   G LK+ADFG AR+       +PDG+
Sbjct:    3 QYCILGRIGEGAHGIVFKAKHVETGEIVALKKVALRRLEDGIPNQALREIKALQEMEDNQYVVQLKAVF-PHSAGFVLAFEFMLSDLAEVVRHAQ--------RPLAQAQVKSYLQMLLKGVSFCHANNIVHRDLKPANLLISASGQLKIADFGLARVF------SPDGS 157          
BLAST of CX294798 vs. ExPASy Swiss-Prot
Match: PHO85_DEBHA (Negative regulator of the PHO system OS=Debaryomyces hansenii GN=PHO85 PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.192e-20
Identity = 64/166 (38.55%), Postives = 97/166 (58.43%), Query Frame = 1
Query:   34 AKYEILECVGSGAYSDVYKGRRLSDNLIVALKEVH------DYQSAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLKTDLATVIAESKKKREGGGDRG-ISVGEIKRWMVQILCGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQARILLGNEFN 510
            ++++ LE +G G Y+ VYKGR  ++  +VALKE++         +A REI  ++ L +  N+V L++    E++   LV EF+  DL       KK  E  G++G + +  +K ++ Q+L G+  CH N ++HRDLKP NLLI + G LKL DFG AR   G  FN
Sbjct:    6 SQFQQLEKLGEGTYATVYKGRNRTNGQLVALKEINLDSEEGTPSTAIREISLMKELDHE-NIVTLYDVIHTENK-LTLVFEFMDKDL-------KKYMEAHGNQGALDLKIVKSFIFQLLKGIMFCHDNRVLHRDLKPQNLLINNKGELKLGDFGLAR-AFGIPFN 161          
BLAST of CX294798 vs. ExPASy Swiss-Prot
Match: CDK20_RAT (Cell division protein kinase 20 OS=Rattus norvegicus GN=Cdk20 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.192e-20
Identity = 66/169 (39.05%), Postives = 93/169 (55.03%), Query Frame = 1
Query:   37 KYEILECVGSGAYSDVYKGRRLSDNLIVALKEVHDYQ-------SAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLKTDLATVIAESKKKREGGGDRGISVGEIKRWMVQILCGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQARILLGNEFNAPDG 522
            +Y IL  +G GA+  V+K + +    IVALK+V   +        A REI+ALQ +++S  VV L   F       VL  EF+ +DLA V+  ++        R ++  ++K ++  +L GV  CH N IVHRDLKP NLLI   G LK+ADFG AR+       +PDG
Sbjct:    3 QYCILGRIGEGAHGIVFKAKHVETGEIVALKKVALRRLEDGIPNQALREIKALQEIEDSQYVVQLKAVF-PHGAGFVLAFEFMLSDLAEVVRHAQ--------RPLAPAQVKSYLQMLLKGVAFCHANNIVHRDLKPANLLISASGQLKIADFGLARVF------SPDG 156          
BLAST of CX294798 vs. ExPASy Swiss-Prot
Match: CDK20_MOUSE (Cell division protein kinase 20 OS=Mus musculus GN=Cdk20 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.192e-20
Identity = 66/169 (39.05%), Postives = 93/169 (55.03%), Query Frame = 1
Query:   37 KYEILECVGSGAYSDVYKGRRLSDNLIVALKEVHDYQ-------SAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLKTDLATVIAESKKKREGGGDRGISVGEIKRWMVQILCGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQARILLGNEFNAPDG 522
            +Y IL  +G GA+  V+K + +    IVALK+V   +        A REI+ALQ +++S  VV L   F       VL  EF+ +DLA V+  ++        R ++  ++K ++  +L GV  CH N IVHRDLKP NLLI   G LK+ADFG AR+       +PDG
Sbjct:    3 QYCILGRIGEGAHGIVFKAKHVETGEIVALKKVALRRLEDGIPNQALREIKALQEIEDSQYVVQLKAVF-PHGAGFVLAFEFMLSDLAEVVRHAQ--------RPLAPAQVKSYLQMLLKGVAFCHANNIVHRDLKPANLLISASGQLKIADFGLARVF------SPDG 156          
BLAST of CX294798 vs. ExPASy Swiss-Prot
Match: CDK20_HUMAN (Cell division protein kinase 20 OS=Homo sapiens GN=CDK20 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.110e-20
Identity = 65/170 (38.24%), Postives = 94/170 (55.29%), Query Frame = 1
Query:   37 KYEILECVGSGAYSDVYKGRRLSDNLIVALKEVHDYQ-------SAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLKTDLATVIAESKKKREGGGDRGISVGEIKRWMVQILCGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQARILLGNEFNAPDGN 525
            +Y IL  +G GA+  V+K + +    IVALK+V   +        A REI+ALQ ++++  VV L   F       VL  EF+ +DLA V+  ++        R ++  ++K ++  +L GV  CH N IVHRDLKP NLLI   G LK+ADFG AR+       +PDG+
Sbjct:    3 QYCILGRIGEGAHGIVFKAKHVETGEIVALKKVALRRLEDGFPNQALREIKALQEMEDNQYVVQLKAVF-PHGGGFVLAFEFMLSDLAEVVRHAQ--------RPLAQAQVKSYLQMLLKGVAFCHANNIVHRDLKPANLLISASGQLKIADFGLARVF------SPDGS 157          
The following BLAST results are available for this feature:
BLAST of CX294798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 409
Match NameE-valueIdentityDescription
CDKF1_ARATH7.239e-7375.71Cyclin-dependent kinase F-1 OS=Arabidopsis thalian... [more]
CDKF1_ORYSJ2.350e-3953.94Cyclin-dependent kinase F-1 OS=Oryza sativa subsp.... [more]
CDKF1_ORYSI6.839e-3953.94Cyclin-dependent kinase F-1 OS=Oryza sativa subsp.... [more]
KIN28_YEAST6.431e-2142.76Serine/threonine-protein kinase KIN28 OS=Saccharom... [more]
CDK2_XENLA8.399e-2141.67Cell division protein kinase 2 OS=Xenopus laevis G... [more]
CDK20_PONAB2.444e-2038.24Cell division protein kinase 20 OS=Pongo abelii GN... [more]
PHO85_DEBHA3.192e-2038.55Negative regulator of the PHO system OS=Debaryomyc... [more]
CDK20_RAT3.192e-2039.05Cell division protein kinase 20 OS=Rattus norvegic... [more]
CDK20_MOUSE3.192e-2039.05Cell division protein kinase 20 OS=Mus musculus GN... [more]
CDK20_HUMAN7.110e-2038.24Cell division protein kinase 20 OS=Homo sapiens GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05056A11SK PhIFruit1 Citrus clementina cDNA clone C05056A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294798 ID=CX294798; Name=CX294798; organism=Citrus clementina; type=EST; length=588bp
AGCTGGAGCATCCATACCCGACCCGAGATCATTGCCAAATACGAAATCCT
CGAGTGCGTGGGCTCCGGCGCGTACTCCGACGTGTACAAGGGCCGGCGAT
TATCGGACAACCTGATCGTCGCGCTGAAGGAGGTCCACGACTACCAATCG
GCGTTCCGAGAAATCGAGGCGCTGCAGATCCTACAGAACTCGCCGAACGT
GGTGGTTTTGCACGAGTACTTTTGGCGGGAGGACGAGGACGCCGTGCTGG
TGCTGGAGTTTCTCAAGACCGATTTGGCGACGGTGATTGCGGAGTCCAAG
AAGAAGAGAGAGGGCGGGGGCGATCGTGGAATCAGCGTCGGTGAGATTAA
GAGATGGATGGTCCAGATTTTGTGTGGAGTGGACGCCTGTCACAGGAATA
CGATCGTTCATCGGGATTTGAAGCCTGGGAATTTGTTGATCGGCGATGAT
GGGGTTCTCAAGTTGGCCGATTTTGGCCAGGCAAGGATACTCCTGGGTAA
TGAATTCAATGCTCCTGATGGTAATTCTCAGCCTTGTGAATCCAATGCTC
CATATCAAGATAACATGTCTGAAGCTCCACAAGTTGAT
back to top