CX294799

Overview
NameCX294799
Unique NameCX294799
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length600
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294799 vs. ExPASy Swiss-Prot
Match: PP414_ARATH (Pentatricopeptide repeat-containing protein At5g42450, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E102 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.846e-30
Identity = 61/108 (56.48%), Postives = 83/108 (76.85%), Query Frame = 2
Query:  275 ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 598
            +SD   + H+VFDE+P+L+V+SAT +IGRF K+  + EA   F R+L L IRP+EFTFG+VI SST   D+ LGKQLH +A K+GL SNVFVGSA+L+ Y+KLS++ +
Sbjct:   39 DSDLIRNAHKVFDEIPELDVISATAVIGRFVKESRHVEASQAFKRLLCLGIRPNEFTFGTVIGSSTTSRDVKLGKQLHCYALKMGLASNVFVGSAVLNCYVKLSTLTD 146          
BLAST of CX294799 vs. ExPASy Swiss-Prot
Match: PP227_ARATH (Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.466e-17
Identity = 44/118 (37.29%), Postives = 70/118 (59.32%), Query Frame = 2
Query:  245 IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 598
            +RT  +    + D      +V DE+P+ NVVS T +I R+++  H  EA+ +F+ M+  + +P+EFTF +V+ S      L LGKQ+H    K    S++FVGS++LD+Y K   I+E
Sbjct:   89 LRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKE 206          
BLAST of CX294799 vs. ExPASy Swiss-Prot
Match: PP251_ARATH (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.621e-14
Identity = 36/102 (35.29%), Postives = 65/102 (63.73%), Query Frame = 2
Query:  293 SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 598
            SV +VF+ +P  +VVS  TII  +A+   YE+A+ +   M   +++P  FT  SV+P  +   D+  GK++H +  + G+ S+V++GS+++D+Y K + IE+
Sbjct:  194 SVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIED 295          

HSP 2 Score: 73.559 bits (179), Expect = 8.715e-13
Identity = 36/117 (30.77%), Postives = 65/117 (55.56%), Query Frame = 2
Query:  245 IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIE 595
            I +  V   ++S +     +VF  +   + +S  +++  + +   Y EA+ LF +M+   ++P    F SVIP+   L  L+LGKQLH +  + G  SN+F+ SA++D+Y K  +I+
Sbjct:  279 IGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIK 395          
BLAST of CX294799 vs. ExPASy Swiss-Prot
Match: PP147_ARATH (Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.621e-14
Identity = 39/103 (37.86%), Postives = 66/103 (64.08%), Query Frame = 2
Query:  290 SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 598
            +  HQ+FD++P  NV+S TT+I  ++K   +++A+ L   ML  N+RP+ +T+ SV+ S   + D+   + LH    K GL+S+VFV SA++D++ KL   E+
Sbjct:  113 NDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV---RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPED 212          
BLAST of CX294799 vs. ExPASy Swiss-Prot
Match: PP257_ARATH (Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana GN=PCMP-A6 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.883e-14
Identity = 37/107 (34.58%), Postives = 68/107 (63.55%), Query Frame = 2
Query:  278 SDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 598
            + +  S   VF+++P  NVVS T +I  + K    +EA  LF RM + +++P+EFT  +++ +ST L  L++G+ +H +A K G   + F+G+A++D+Y K  S+++
Sbjct:  198 NSQLDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQD 304          
BLAST of CX294799 vs. ExPASy Swiss-Prot
Match: PP271_ARATH (Putative pentatricopeptide repeat-containing protein At3g49140 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.912e-13
Identity = 34/103 (33.01%), Postives = 59/103 (57.28%), Query Frame = 2
Query:  290 SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 598
            +S  +VFDE+P+ NV+    +I  +     Y E + +F  M   N+RP  +TF  V+ + +    + +G+++H  ATKVGL S +FVG+ ++ +Y K   + E
Sbjct:   91 ASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSE 193          
BLAST of CX294799 vs. ExPASy Swiss-Prot
Match: PP430_ARATH (Pentatricopeptide repeat-containing protein At5g52850, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H31 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.109e-13
Identity = 39/123 (31.71%), Postives = 63/123 (51.22%), Query Frame = 2
Query:  230 LETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 598
            LE   +  + +S   ++D   +  ++FDE+    V + T +I  F K   +  A+ LF  M+     P+EFTF SV+ S   L D++ G ++H    K G + N  VGS++ DLY K    +E
Sbjct:   55 LENLDLCNNLLSLYLKTDGIWNARKLFDEMSHRTVFAWTVMISAFTKSQEFASALSLFEEMMASGTHPNEFTFSSVVRSCAGLRDISYGGRVHGSVIKTGFEGNSVVGSSLSDLYSKCGQFKE 177          

HSP 2 Score: 68.9366 bits (167), Expect = 2.147e-11
Identity = 33/117 (28.21%), Postives = 66/117 (56.41%), Query Frame = 2
Query:  245 IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIE 595
            ++T  V   S+  K     +V +   + +V   T+++  F +    +EA+  F  M  L ++P+ FT+ +++   +A+  L+ GKQ+H+   KVG + +  VG+A++D+Y+K S+ E
Sbjct:  261 LKTSLVDFYSQFSKMEDAVRVLNSSGEQDVFLWTSVVSGFVRNLRAKEAVGTFLEMRSLGLQPNNFTYSAILSLCSAVRSLDFGKQIHSQTIKVGFEDSTDVGNALVDMYMKCSASE 377          
BLAST of CX294799 vs. ExPASy Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.673e-13
Identity = 35/101 (34.65%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  293 SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIE 595
            +  ++FDE+P  +VVS   +I  +A+  +Y+EA+ LF  M+  N+RP E T  +V+ +      + LG+Q+H W    G  SN+ + +A++DLY K   +E
Sbjct:  218 NAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELE 318          
BLAST of CX294799 vs. ExPASy Swiss-Prot
Match: PP280_ARATH (Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.715e-13
Identity = 37/111 (33.33%), Postives = 67/111 (60.36%), Query Frame = 2
Query:  266 CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 598
            CGS  D      +VFD +P+ N+VS T++I  +++     EAI L+ +ML  ++ P +F FGS+I +  +  D+ LGKQLHA   K+   S++   +A++ +Y++ + + +
Sbjct:  115 CGSLRD----AREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSD 221          
BLAST of CX294799 vs. ExPASy Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.942e-12
Identity = 35/103 (33.98%), Postives = 63/103 (61.17%), Query Frame = 2
Query:  290 SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 598
            +S ++VFD++P+ ++V+  ++I  FA+    EEA+ L++ M    I+P  FT  S++ +   +  L LGK++H +  KVGL  N+   + +LDLY +   +EE
Sbjct:  173 ASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEE 275          
The following BLAST results are available for this feature:
BLAST of CX294799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
PP414_ARATH7.846e-3056.48Pentatricopeptide repeat-containing protein At5g42... [more]
PP227_ARATH4.466e-1737.29Putative pentatricopeptide repeat-containing prote... [more]
PP251_ARATH4.621e-1435.29Putative pentatricopeptide repeat-containing prote... [more]
PP147_ARATH4.621e-1437.86Pentatricopeptide repeat-containing protein At2g03... [more]
PP257_ARATH7.883e-1434.58Pentatricopeptide repeat-containing protein At3g26... [more]
PP271_ARATH3.912e-1333.01Putative pentatricopeptide repeat-containing prote... [more]
PP430_ARATH5.109e-1331.71Pentatricopeptide repeat-containing protein At5g52... [more]
PPR21_ARATH6.673e-1334.65Pentatricopeptide repeat-containing protein At1g08... [more]
PP280_ARATH8.715e-1333.33Pentatricopeptide repeat-containing protein At3g53... [more]
PP330_ARATH1.942e-1233.98Pentatricopeptide repeat-containing protein At4g21... [more]

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Properties
Property NameValue
Genbank descriptionC05056A12SK PhIFruit1 Citrus clementina cDNA clone C05056A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294799 ID=CX294799; Name=CX294799; organism=Citrus clementina; type=EST; length=600bp
TGTACTACTAAAATCAGCATGTGAATGTTACATCAATCATGCATTAATGG
GATAAAGCGAACCTTTCATGGTGTGATTGGGAGTTCAAAATCAAGATAAC
CCGCCAAAATCACACATGATCCAACTATTATGTATATGCAGATCATCTCT
CTCCCTTAACAAGCTCAGCAAACTGCACTCTTTAGCCCCTAATTACCTGA
TTGAAACCCAAAAAGCCAGCGTACAAAAACTCGAAACCCCAGCTATTCGA
ACGGACAGTGTTAGCTGCGGTAGCGAATCAGACAAATTTTCGAGTGTTCA
CCAAGTGTTCGATGAAGTGCCTGACTTAAATGTGGTTTCCGCCACAACCA
TAATTGGCCGTTTTGCTAAGCAGCACCACTATGAAGAAGCCATATATCTC
TTTTCAAGAATGCTTCTGTTGAATATCAGACCCAGCGAGTTCACTTTTGG
ATCTGTAATTCCCTCATCAACTGCTTTAGAGGACCTTAATTTGGGCAAGC
AACTACATGCCTGGGCAACAAAGGTGGGACTTCAGTCGAATGTATTTGTG
GGGAGCGCTATTTTGGATCTTTATATCAAGCTGAGTTCAATCGAGGAAGC
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