CX294807

Overview
NameCX294807
Unique NameCX294807
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length610
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10412 contig Ccv1_Contig10412:50..659. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294807 vs. ExPASy Swiss-Prot
Match: ZFP1_WHEAT (Zinc finger protein 1 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.515e-19
Identity = 66/191 (34.55%), Postives = 81/191 (42.41%), Query Frame = 1
Query:   73 ALEALNSPTTNTHNHHPFRYEDSWTKRRRSKRPRTDESPPLPPAVAAPTEEEYMALCLIMLARGTTTANTAPAERTPSLAPEQRPQDQFPEPPSLKLSYKCSVCNKAFSSYQALGGHKASHR------------KXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHECSICHKSFPTGQALGGHKRCH 609
            A  A++S T+   + H  +    W KR+RS+R R+              EEE +ALCL+ML+RG      AP              + F  P  +   +KCSVC K+FSSYQALGGHK SHR                                              H CSIC K FPTGQALGGHKR H
Sbjct:   23 AAAAVSSATSGEESGHVLQ---GWAKRKRSRRQRS--------------EEENLALCLLMLSRGGKQRVQAPQP------------ESFAAP--VPAEFKCSVCGKSFSSYQALGGHKTSHRVKQPSPPSDAAAAPLVALPAVAAILPSAEPATSSTAASSDGATNRVHRCSICQKEFPTGQALGGHKRKH 182          
The following BLAST results are available for this feature:
BLAST of CX294807 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ZFP1_WHEAT6.515e-1934.55Zinc finger protein 1 OS=Triticum aestivum PE=2 SV... [more]
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Properties
Property NameValue
Genbank descriptionC05056B11SK PhIFruit1 Citrus clementina cDNA clone C05056B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294807 ID=CX294807; Name=CX294807; organism=Citrus clementina; type=EST; length=610bp
TCGAAACTCAACAGATTCAACCACAAGAGTCGAGAATTCACCTACAAGAA
AAGAAAAAAATTCACGACTATGGCTCTAGAAGCTCTAAACTCTCCTACAA
CAAACACCCACAATCATCATCCGTTTAGATACGAAGACTCATGGACTAAA
AGAAGGCGCTCAAAACGACCCCGTACCGACGAGTCCCCACCACTGCCACC
AGCAGTAGCAGCTCCCACAGAAGAAGAGTACATGGCTCTCTGTCTCATCA
TGCTCGCCCGCGGTACCACCACCGCCAACACCGCTCCAGCCGAAAGAACC
CCATCCCTGGCGCCGGAACAGCGGCCGCAGGATCAGTTCCCGGAGCCGCC
AAGTTTGAAACTTTCTTACAAGTGCAGTGTGTGCAACAAGGCTTTCTCTT
CTTACCAGGCCCTTGGTGGGCACAAAGCCAGCCACCGCAAGAACGCTGCT
GACGCCTCGGCTTCTCCCAACGCCGCAGCCGCCAGTGACGTCACCCCACC
ACCGTCAGCAACGGCGAGCAGCGGAAGCGGCGGTAGGACCCACGAGTGCT
CTATTTGTCACAAGTCTTTTCCCACTGGACAAGCTCTAGGAGGCCACAAG
CGGTGTCACT
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