CX294817

Overview
NameCX294817
Unique NameCX294817
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length655
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294817_ssr287 microsatellite CX294817_ssr287:287..298. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX294817 vs. ExPASy Swiss-Prot
Match: EBP_ARATH (Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase OS=Arabidopsis thaliana GN=At1g20050 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.493e-40
Identity = 58/95 (61.05%), Postives = 72/95 (75.79%), Query Frame = 3
Query:  348 KEYSKGDSRYASRHVAVLAIEGIAVIFVGPASLLAMYAIAKGKSYSYILQFALSLVQFYGSSLYFITAFLEGNKFACTRYFYYSYFIAQGGTWLL 632
            KEYSKGDSRY  R  AV+++EGI  + VGPASLLA+YAIAK KSYSY+LQ A+S+ Q YG  +YFITA LEG+ FA   ++YYSY+I     W+L
Sbjct:   96 KEYSKGDSRYVGRDSAVVSVEGITAVIVGPASLLAIYAIAKEKSYSYVLQLAISVCQLYGCLVYFITAILEGDNFATNSFYYYSYYIGANCWWVL 190          

HSP 2 Score: 63.1586 bits (152), Expect = 1.493e-40
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1
Query:  115 RKLSKTDRWLMIWWAVSGLIHIIHEGYWFFSPEFYKDKSGNYFAEVCK 258
            RK +K D+ LM WW  +GL H+I EGY+ FSPEF+KD +  Y AEV K
Sbjct:   49 RKKAKLDKLLMCWWTFTGLTHVILEGYFVFSPEFFKDNTSAYLAEVWK 96          
BLAST of CX294817 vs. ExPASy Swiss-Prot
Match: EBP_ORYSJ (Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase OS=Oryza sativa subsp. japonica GN=Os01g0103600 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.277e-38
Identity = 51/95 (53.68%), Postives = 70/95 (73.68%), Query Frame = 3
Query:  348 KEYSKGDSRYASRHVAVLAIEGIAVIFVGPASLLAMYAIAKGKSYSYILQFALSLVQFYGSSLYFITAFLEGNKFACTRYFYYSYFIAQGGTWLL 632
            KEYSKGDSRY +R  A + +EGI  +  GPASLLA+YAIA GKSYS+ILQF + L Q YG  +YFITA+L+G  F  + +++++YFI    +W++
Sbjct:  100 KEYSKGDSRYVARDPATVTVEGITAVLEGPASLLAVYAIASGKSYSHILQFTVCLGQLYGCLVYFITAYLDGFNFWTSPFYFWAYFIGANSSWVV 194          

HSP 2 Score: 67.781 bits (164), Expect = 2.277e-38
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 1
Query:  100 AGRSPRKLSKTDRWLMIWWAVSGLIHIIHEGYWFFSPEFYKDKSGNYFAEVCK 258
            +GR  R+LS TDRWLM WWA +GL HII EG + F+P F+ +++ +YF EV K
Sbjct:   48 SGRCSRRLSDTDRWLMCWWAFTGLTHIIIEGTFVFAPNFFSNQNPSYFDEVWK 100          
BLAST of CX294817 vs. ExPASy Swiss-Prot
Match: EBP_CAVPO (3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase OS=Cavia porcellus GN=EBP PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.145e-11
Identity = 38/98 (38.78%), Postives = 54/98 (55.10%), Query Frame = 3
Query:  348 KEYSKGDSRYASRHVAVLAIEGIAVIFVGPASLLAMYAIAKGKSYSYILQFALSLVQFYGSSLYFITAFLEG---NKFACTRYFYYSYFIAQGGTWLL 632
            KEY+KGDSRY      ++ +E I V+  GP SL A+ A  +     Y+LQF +SL Q YG  LYF+T + +G    +     YF++ YF      WL+
Sbjct:  103 KEYAKGDSRYIIEDNFIICMESITVVLWGPLSLWAVIAFLRQHPSRYVLQFVISLGQIYGDLLYFLTEYRDGFQHGEMGHPIYFWF-YFFFMNVLWLV 199          
BLAST of CX294817 vs. ExPASy Swiss-Prot
Match: EBP_HUMAN (3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase OS=Homo sapiens GN=EBP PE=1 SV=3)

HSP 1 Score: 58.9214 bits (141), Expect = 8.117e-11
Identity = 34/98 (34.69%), Postives = 49/98 (50.00%), Query Frame = 3
Query:  348 KEYSKGDSRYASRHVAVLAIEGIAVIFVGPASLLAMYAIAKGKSYSYILQFALSLVQFYGSSLYFITAFLEG---NKFACTRYFYYSYFIAQGGTWLL 632
            KEY+KGDSRY       + +E I     GP SL  + A  +     +ILQ  +S+ Q YG  LYF+T   +G    +     YF++ YF+     WL+
Sbjct:  102 KEYAKGDSRYILGDNFTVCMETITACLWGPLSLWVVIAFLRQHPLRFILQLVVSVGQIYGDVLYFLTEHRDGFQHGELGHPLYFWF-YFVFMNALWLV 198          

HSP 2 Score: 28.1054 bits (61), Expect = 8.117e-11
Identity = 14/34 (41.18%), Postives = 21/34 (61.76%), Query Frame = 1
Query:  136 RWLMIWWAVSGLIHIIHEGYWFFSPEFYKDKSGN 237
            R  + W+AV G IH++ EG WF    +Y+D  G+
Sbjct:   63 RLSLCWFAVCGFIHLVIEG-WFVL--YYEDLLGD 93          
The following BLAST results are available for this feature:
BLAST of CX294817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
EBP_ARATH1.493e-4061.05Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-i... [more]
EBP_ORYSJ2.277e-3853.68Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-i... [more]
EBP_CAVPO1.145e-1138.783-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase ... [more]
EBP_HUMAN8.117e-1134.693-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase ... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05056C11SK PhIFruit1 Citrus clementina cDNA clone C05056C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294817 ID=CX294817; Name=CX294817; organism=Citrus clementina; type=EST; length=655bp
GTTAAAAGTCAGTAAAGTCTAATCATCTAACAGTACTTAAGCTGCAGTTA
AATCCCAATGTCAATTAAATCTTTGTTTTCTAATAAATTTGTGTCTACTG
CAGGGAGGTCACCACGCAAATTATCAAAAACAGACAGATGGCTTATGATC
TGGTGGGCTGTTAGTGGTCTTATTCACATCATTCACGAGGGTTACTGGTT
TTTCTCTCCAGAATTTTATAAGGACAAGTCTGGAAATTATTTTGCCGAAG
TTTGTAAGTTGTCTTTAATGAGAATAATTACATTGAAATTAATTAATTGT
AAGTAAGGTGTTTAGTCTCATAAACGAAAGCTGGCACTGCTGCAGGGAAA
GAATATAGCAAAGGAGATTCAAGATATGCATCAAGACATGTGGCAGTTCT
TGCTATTGAAGGAATTGCCGTGATTTTTGTTGGCCCTGCTAGTCTTCTTG
CAATGTATGCTATAGCTAAGGGAAAGTCATACAGCTACATTCTTCAGTTT
GCACTTTCTCTTGTGCAGTTCTATGGGTCTTCCCTCTATTTCATAACAGC
TTTCTTGGAAGGCAACAAGTTTGCATGTACTAGATATTTTTATTATTCAT
ACTTCATAGCACAAGGTGGCACCTGGCTTCTATTTCAGCTTTAATATGAT
CCGCT
back to top