CX294818

Overview
NameCX294818
Unique NameCX294818
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294818_ssr386 microsatellite CX294818_ssr386:386..397. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX294818 vs. ExPASy Swiss-Prot
Match: EF1G_PRUAV (Elongation factor 1-gamma OS=Prunus avium PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 3.648e-57
Identity = 102/115 (88.70%), Postives = 109/115 (94.78%), Query Frame = 3
Query:    3 SLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQVIPQFIMYECYDMELYDWKKVDINDEAQKERVSQMIEDHEPFEGEALLDAKCFK 347
            SLWFC+YKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQ IP F+M ECYDMELY+W KVD++DE QKERV+Q+IED EPFEGEALLDAKCFK
Sbjct:  308 SLWFCEYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQEIPPFVMEECYDMELYNWTKVDLSDENQKERVNQVIEDQEPFEGEALLDAKCFK 422          
BLAST of CX294818 vs. ExPASy Swiss-Prot
Match: EF1G1_ORYSJ (Elongation factor 1-gamma 1 OS=Oryza sativa subsp. japonica GN=Os02g0220600 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 5.268e-56
Identity = 102/115 (88.70%), Postives = 107/115 (93.04%), Query Frame = 3
Query:    3 SLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQVIPQFIMYECYDMELYDWKKVDINDEAQKERVSQMIEDHEPFEGEALLDAKCFK 347
            SLWFCDYKYNDENTVSFVT+NKVGGFLQRMDL RKYAFGKMLVIGSEPPFKVKGLWLFRG  IP+F+M E YDMELY+W KVDI+DEAQKERVS MIED EPFEGEALLDAKCFK
Sbjct:  304 SLWFCDYKYNDENTVSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEIPKFVMDEVYDMELYEWTKVDISDEAQKERVSAMIEDLEPFEGEALLDAKCFK 418          
BLAST of CX294818 vs. ExPASy Swiss-Prot
Match: EF1G2_ORYSJ (Elongation factor 1-gamma 2 OS=Oryza sativa subsp. japonica GN=Os02g0220500 PE=2 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 1.174e-55
Identity = 101/115 (87.83%), Postives = 107/115 (93.04%), Query Frame = 3
Query:    3 SLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQVIPQFIMYECYDMELYDWKKVDINDEAQKERVSQMIEDHEPFEGEALLDAKCFK 347
            SLWFCDYKYNDENTVSFVT+NKVGGFLQRMDL RKYAFGKMLVIGSEPPFKVKGLWLFRG  IP+F+M E YDMELY+W KVDI+DEAQKERVS MIED EPFEGE+LLDAKCFK
Sbjct:  304 SLWFCDYKYNDENTVSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEIPKFVMDEVYDMELYEWTKVDISDEAQKERVSAMIEDLEPFEGESLLDAKCFK 418          
BLAST of CX294818 vs. ExPASy Swiss-Prot
Match: EF1G3_ORYSJ (Elongation factor 1-gamma 3 OS=Oryza sativa subsp. japonica GN=Os06g0571400 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 5.824e-55
Identity = 99/115 (86.09%), Postives = 106/115 (92.17%), Query Frame = 3
Query:    3 SLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQVIPQFIMYECYDMELYDWKKVDINDEAQKERVSQMIEDHEPFEGEALLDAKCFK 347
            SLWFCDYKYNDENTVSFVT+NKVGGFLQRMDL RKYAFGKMLVIGS PPFKVKGLWLFRGQ IP+F+M E YDMELY+W KVD++DEAQKERV+ MIED EPFEGE LLDAKCFK
Sbjct:  302 SLWFCDYKYNDENTVSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSTPPFKVKGLWLFRGQDIPKFVMDEVYDMELYEWTKVDLSDEAQKERVNAMIEDQEPFEGEDLLDAKCFK 416          
BLAST of CX294818 vs. ExPASy Swiss-Prot
Match: EF1G2_ARATH (Probable elongation factor 1-gamma 2 OS=Arabidopsis thaliana GN=At1g57720 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 7.607e-55
Identity = 101/115 (87.83%), Postives = 106/115 (92.17%), Query Frame = 3
Query:    3 SLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQVIPQFIMYECYDMELYDWKKVDINDEAQKERVSQMIEDHEPFEGEALLDAKCFK 347
            SLWFCDYKYNDEN VSFVTLNKVGGFLQRMDLARKY+FGKML+ GSE PFKVKGLWLFRG  IP+FIM E YDMELY+W KVDI+DEAQKERVSQMIED EPFEGEALLDAKCFK
Sbjct:  299 SLWFCDYKYNDENMVSFVTLNKVGGFLQRMDLARKYSFGKMLICGSEGPFKVKGLWLFRGPEIPKFIMDEVYDMELYEWTKVDISDEAQKERVSQMIEDAEPFEGEALLDAKCFK 413          
BLAST of CX294818 vs. ExPASy Swiss-Prot
Match: EF1G1_ARATH (Probable elongation factor 1-gamma 1 OS=Arabidopsis thaliana GN=At1g09640 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 7.607e-55
Identity = 101/115 (87.83%), Postives = 106/115 (92.17%), Query Frame = 3
Query:    3 SLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQVIPQFIMYECYDMELYDWKKVDINDEAQKERVSQMIEDHEPFEGEALLDAKCFK 347
            SLWFCDYKYNDEN VSFVTLNKVGGFLQRMDLARKY+FGKML+ GSE PFKVKGLWLFRG  IP+FIM E YDMELY+W KVDI+DEAQKERVSQMIED EPFEGEALLDAKCFK
Sbjct:  300 SLWFCDYKYNDENMVSFVTLNKVGGFLQRMDLARKYSFGKMLICGSEGPFKVKGLWLFRGPEIPKFIMDEVYDMELYEWTKVDISDEAQKERVSQMIEDAEPFEGEALLDAKCFK 414          
BLAST of CX294818 vs. ExPASy Swiss-Prot
Match: EF1G_TRYCR (Elongation factor 1-gamma OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.657e-17
Identity = 44/113 (38.94%), Postives = 71/113 (62.83%), Query Frame = 3
Query:    9 WFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQVIPQFIMYECYDMELYDWKKVDINDEAQKERVSQMIEDHEPFEGEALLDAKCFK 347
            ++C YKYN++N + F+T N + G+ QRM+  RKYAFG  L+IG E    +  LW+FRG+ +P  I+ +  D EL+DW++V  +  AQ+ER++  +    P     +L+ + FK
Sbjct:  301 FWCRYKYNEDNKMQFMTANLIRGWFQRMEHVRKYAFGVALIIGEERRHDIVALWVFRGRGMPA-IVEDVEDTELFDWEEV-ADVAAQRERITDYLSWEGPTIPRPVLEGRVFK 411          
BLAST of CX294818 vs. ExPASy Swiss-Prot
Match: EF1G_DROME (Elongation factor 1-gamma OS=Drosophila melanogaster GN=Ef1gamma PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 6.515e-14
Identity = 36/96 (37.50%), Postives = 58/96 (60.42%), Query Frame = 3
Query:    3 SLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQVIPQFIMYEC-YDMELYDWKKVDINDEAQKERVSQ 287
            S+WF +YKYN+E +  F++ N + G  QR+D  RK AF  + + G +    + G+W++RGQ +   +  +   D E+YDWKK+D   E  K+ V+Q
Sbjct:  315 SIWFGEYKYNEELSKVFMSCNLITGMFQRLDKMRKAAFASVCLFGEDGNSTISGIWVWRGQDLAFTLSPDWQIDYEVYDWKKLDAKSEETKKLVTQ 410          
BLAST of CX294818 vs. ExPASy Swiss-Prot
Match: EF1G_CARAU (Elongation factor 1-gamma OS=Carassius auratus GN=eef1g PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.515e-14
Identity = 37/108 (34.26%), Postives = 67/108 (62.04%), Query Frame = 3
Query:    3 SLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQVIPQFIMYECY--DMELYDWKKVDINDEAQKERVSQMIEDHEPFEGE 320
            S+W+ +Y++ +E T+SF++ N + G  QR+D  RK AF  +++ G+     + G+W+FRGQ +  F + E +  D E Y W+K+D++ E  K     M++++  +EGE
Sbjct:  325 SIWYAEYRFPEELTMSFMSCNLITGMFQRLDKLRKNAFASVILFGANNDSCISGIWVFRGQEL-AFTLSEDWQIDYESYTWRKLDVDSEECK----TMVKEYFAWEGE 427          
BLAST of CX294818 vs. ExPASy Swiss-Prot
Match: EF1G_CAEEL (Probable elongation factor 1-gamma OS=Caenorhabditis elegans GN=F17C11.9 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.476e-13
Identity = 34/116 (29.31%), Postives = 65/116 (56.03%), Query Frame = 3
Query:    3 SLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQVIPQFIMYEC-YDMELYDWKKVDINDEAQKERVSQMIEDHEPFEGEALLDAKCFK 347
            S+W C+YKY ++ T++F++ N + G  QR++  +K AF  M++ G++    + G+W+++G  +   +  +   D E Y W K+D   +A K+ V++ +     F G+     K FK
Sbjct:  283 SIWKCEYKYPEDLTLAFMSCNLINGMYQRLEKLKKNAFASMILFGTDNNSTISGIWVWKGDKLAFELSPDWQVDYESYTWTKLDAKSDATKKEVNEYLMWEGDFGGKKFNQGKIFK 398          
The following BLAST results are available for this feature:
BLAST of CX294818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
EF1G_PRUAV3.648e-5788.70Elongation factor 1-gamma OS=Prunus avium PE=2 SV=... [more]
EF1G1_ORYSJ5.268e-5688.70Elongation factor 1-gamma 1 OS=Oryza sativa subsp.... [more]
EF1G2_ORYSJ1.174e-5587.83Elongation factor 1-gamma 2 OS=Oryza sativa subsp.... [more]
EF1G3_ORYSJ5.824e-5586.09Elongation factor 1-gamma 3 OS=Oryza sativa subsp.... [more]
EF1G2_ARATH7.607e-5587.83Probable elongation factor 1-gamma 2 OS=Arabidopsi... [more]
EF1G1_ARATH7.607e-5587.83Probable elongation factor 1-gamma 1 OS=Arabidopsi... [more]
EF1G_TRYCR1.657e-1738.94Elongation factor 1-gamma OS=Trypanosoma cruzi PE=... [more]
EF1G_DROME6.515e-1437.50Elongation factor 1-gamma OS=Drosophila melanogast... [more]
EF1G_CARAU6.515e-1434.26Elongation factor 1-gamma OS=Carassius auratus GN=... [more]
EF1G_CAEEL2.476e-1329.31Probable elongation factor 1-gamma OS=Caenorhabdit... [more]

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Properties
Property NameValue
Genbank descriptionC05056C12SK PhIFruit1 Citrus clementina cDNA clone C05056C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294818 ID=CX294818; Name=CX294818; organism=Citrus clementina; type=EST; length=491bp
ACTCTCTTTGGTTCTGTGATTACAAGTACAATGATGAGAATACAGTCTCA
TTTGTGACTTTGAACAAAGTGGGCGGATTCCTGCAGCGAATGGACTTGGC
TCGTAAGTATGCTTTTGGGAAGATGCTGGTTATTGGCTCGGAGCCACCTT
TCAAGGTAAAGGGTTTGTGGCTTTTCCGTGGACAAGTGATTCCTCAATTT
ATAATGTACGAGTGTTACGACATGGAGTTGTATGATTGGAAGAAGGTGGA
CATCAATGATGAAGCTCAGAAGGAGCGTGTAAGCCAGATGATCGAAGATC
ATGAACCTTTCGAGGGTGAGGCCTTGTTAGATGCCAAGTGCTTCAAGTGA
GATCATCCAGATGGACCAGACCGGGGAAGTAGCTGGTGTGTGTGTGTAAT
GCTGTTGCAATCATTTAAGTTTTCTAATTTTTCATCTTTAGTTTTGTGCT
GTTAGCAAATTGACCCTATTTAAGCATTCAATTGACTTTGA
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