CX294823
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX294823 vs. ExPASy Swiss-Prot
Match: ARFA_ARATH (Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2) HSP 1 Score: 241.506 bits (615), Expect = 2.571e-63 Identity = 124/190 (65.26%), Postives = 141/190 (74.21%), Query Frame = 1 Query: 28 NGNTCRLFGIQLVDNSNVEEASPAFTMSGAMGDDRAIPCLDADSDQHSEPSNINRSDVPSVSCDAEKSCLRSPQESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSPKVKLPGNEELNAGKPDVE 597 NGN CRLFG +LV+N NV+E A ++SGA+ D+ +P + DS Q SEP NIN+SD+PS S D EKS LRSPQESQSRQIRSCTKVHMQG AVGRA+DLTR +CYEDL KKLEEMFDI+G+L STKKWQVVYT PW+EFC MVRKIFIYT EEVKKLSPK KL N + K D E Sbjct: 461 NGNVCRLFGFELVENVNVDECFSAASVSGAVAVDQPVPSNEFDSGQQSEPLNINQSDIPSGSGDPEKSSLRSPQESQSRQIRSCTKVHMQGSAVGRAIDLTRSECYEDLFKKLEEMFDIKGELLESTKKWQVVYTDDEDDMMMVGDDPWNEFCGMVRKIFIYTPEEVKKLSPKNKLAVNARMQL-KADAE 649
BLAST of CX294823 vs. ExPASy Swiss-Prot
Match: ARFI_ORYSJ (Auxin response factor 9 OS=Oryza sativa subsp. japonica GN=ARF9 PE=2 SV=1) HSP 1 Score: 189.889 bits (481), Expect = 8.876e-48 Identity = 101/173 (58.38%), Postives = 124/173 (71.68%), Query Frame = 1 Query: 40 CRLFGIQLVDNSNVEEASPAFTMSGAMGDDRAIPCLDADSDQHSEPSNINRSDVPSVSCDAEKSCLRSPQESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSPKVKLP 558 CRLFGI++ +S VEEA PA T+SG +G D+ + +D DSDQ S+PSN N+SD P S + RSP ESQSRQ+RSCTKV MQG+AVGRAVDLT+ + Y DL KLEEMFDI+GDLC + K+WQVVYT PW EFCSMV++I+IY+ EE K L+PK KLP Sbjct: 479 CRLFGIEI--SSAVEEALPAATVSG-VGYDQTVLSVDVDSDQISQPSNGNKSDAPGTSSE------RSPLESQSRQVRSCTKVIMQGMAVGRAVDLTKLNGYGDLRSKLEEMFDIQGDLCPTLKRWQVVYTDDEDDMMLVGDDPWDEFCSMVKRIYIYSYEEAKLLAPKSKLP 642
BLAST of CX294823 vs. ExPASy Swiss-Prot
Match: ARFG_ORYSJ (Auxin response factor 7 OS=Oryza sativa subsp. japonica GN=ARF7 PE=2 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 5.385e-45 Identity = 96/173 (55.49%), Postives = 121/173 (69.94%), Query Frame = 1 Query: 40 CRLFGIQLVDNSNVEEASPAFTMSGAMGDDRAIPCLDADSDQHSEPSNINRSDVPSVSCDAEKSCLRSPQESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSPKVKLP 558 CRLFGI++ +S VE SP +SG +G D+ +DA+SDQ S+PS+ N+SD P+ S + SP E+QSRQ+RSCTKV MQG+AVGRAVDLTR Y+DL KLEEMFDI+G+L S KKW+VVYT PW EFCSMV++I+IYT EE K+L+PK KLP Sbjct: 480 CRLFGIEI--SSAVEATSPLAAVSG-VGQDQPAASVDAESDQLSQPSHANKSDAPAASSEP------SPHETQSRQVRSCTKVIMQGMAVGRAVDLTRLHGYDDLRCKLEEMFDIQGELSASLKKWKVVYTDDEDDMMLVGDDPWPEFCSMVKRIYIYTYEEAKQLTPKSKLP 643
BLAST of CX294823 vs. ExPASy Swiss-Prot
Match: ARFX_ORYSJ (Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 2.428e-29 Identity = 73/190 (38.42%), Postives = 107/190 (56.32%), Query Frame = 1 Query: 1 LVPNSARGGNGNTCRLFGIQLVDNSNVEE--ASPAFTMSGAMGDDRAIPCLDADSDQHSEPSN-INRSDVPSVSCDAEK--SCLRSPQESQSRQ----IRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSP 543 ++ ++ + G++C LFGI L + E + P+ G + D + D+ S+PS + D EK SC + QS+Q RSC KVH QGIA+GR++DLT+F CY++L+ +L++MFD G+L S+K W VVYT PW+EFC+MV KIFIYT EEV+K++P Sbjct: 620 VIDHNVQKAKGSSCMLFGISLDSPAKPELLISPPSVAFDGKLQQDAL------EEDECSDPSKTVKPLDGAQHDSAREKHQSCPDGTKNIQSKQQNGSSRSCKKVHKQGIALGRSIDLTKFTCYDELIAELDQMFDFNGELNSSSKNWMVVYTDNEGDMMLVGDDPWNEFCNMVHKIFIYTREEVQKMNP 803
BLAST of CX294823 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2) HSP 1 Score: 117.857 bits (294), Expect = 4.287e-26 Identity = 73/184 (39.67%), Postives = 106/184 (57.61%), Query Frame = 1 Query: 13 SARGGNGNTCRLFGIQLVDNSNVEEA--SPAFTMSGAMGDDR-AIPCLDADSDQH--SEPSNINRSDVPSVSCDAEKSCLRSPQESQSR--QIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSP 543 +A+ GN CRLFGI L +N N ++ S ++ A G + A P + SDQ S+ +N +R + P+++Q++ RSCTKVH QGIA+GR+VDL++F YE+L+ +L+ +F+ G+L K W +VYT PW EFC MVRKIFIYT EEV+K++P Sbjct: 646 TAKSREGN-CRLFGIPLTNNMNGTDSTMSQRNNLNDAAGLTQIASPKVQDLSDQSKGSKSTNDHREQGRPFQTNNPH-----PKDAQTKTNSSRSCTKVHKQGIALGRSVDLSKFQNYEELVAELDRLFEFNGELMAPKKDWLIVYTDEENDMMLVGDDPWQEFCCMVRKIFIYTKEEVRKMNP 823
BLAST of CX294823 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSJ (Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2) HSP 1 Score: 115.546 bits (288), Expect = 2.127e-25 Identity = 72/194 (37.11%), Postives = 102/194 (52.58%), Query Frame = 1 Query: 31 GNTCRLFGIQLVDNSNVE--EASPAFTMSGAMGDDRAIPCLDADS---DQHSEPSNINRS-DVPSVSCDAEKSCLRSPQ-----ESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSPKVKLPGNEELNA 579 G +C+LFGI L + E ++ + G A D ++ S+PS + D P EK + +SQ RSC KVH QGIA+GR+VDLT+F+ YE+L+ +L++MFD G+L G K+W VVYT PW EFC MV KIFIYT EEV++++P +E+ +A Sbjct: 634 GASCKLFGIHLDSPAKSEPLKSPSSVVYDGTPQTPGATEWRRPDVTEVEKCSDPSKAMKPLDTPQPDSVPEKPSSQQASRNMSCKSQGVSTRSCKKVHKQGIALGRSVDLTKFNGYEELIAELDDMFDFNGELKGPKKEWMVVYTDNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGTLNSRSEDSHA 827
BLAST of CX294823 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSI (Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.127e-25 Identity = 72/194 (37.11%), Postives = 102/194 (52.58%), Query Frame = 1 Query: 31 GNTCRLFGIQLVDNSNVE--EASPAFTMSGAMGDDRAIPCLDADS---DQHSEPSNINRS-DVPSVSCDAEKSCLRSPQ-----ESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSPKVKLPGNEELNA 579 G +C+LFGI L + E ++ + G A D ++ S+PS + D P EK + +SQ RSC KVH QGIA+GR+VDLT+F+ YE+L+ +L++MFD G+L G K+W VVYT PW EFC MV KIFIYT EEV++++P +E+ +A Sbjct: 634 GASCKLFGIHLDSPAKSEPLKSPSSVVYDGTPQTPGATEWRRPDVTEVEKCSDPSKAMKPLDTPQPDSVPEKPSSQQASRNMSCKSQGVSTRSCKKVHKQGIALGRSVDLTKFNGYEELIAELDDMFDFNGELKGPKKEWMVVYTDNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGTLNSRSEDSHA 827
BLAST of CX294823 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 3.629e-25 Identity = 52/117 (44.44%), Postives = 77/117 (65.81%), Query Frame = 1 Query: 220 AEKSCLRSPQESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSPKVKLPGNEE 570 A++S ++Q RSCTKVH QG+A+GR+VDL++F Y++L +L++MF+ +G+L S K WQ+VYT PW EFCS+VRKI+IYT EEV+K++ K P ++ Sbjct: 675 AQQSSKDVQSKTQVASTRSCTKVHKQGVALGRSVDLSKFSNYDELKAELDKMFEFDGELVSSNKNWQIVYTDNEGDMMLVGDDPWEEFCSIVRKIYIYTKEEVQKMNSKSNAPRKDD 791
BLAST of CX294823 vs. ExPASy Swiss-Prot
Match: ARFI_ARATH (Auxin response factor 9 OS=Arabidopsis thaliana GN=ARF9 PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.686e-22 Identity = 66/171 (38.60%), Postives = 96/171 (56.14%), Query Frame = 1 Query: 43 RLFGIQLVDNSNVEEASPAFTMSGAMGDDRAIPCLDADSDQHSEPSNINRSDVPSVSCDAEKSCLR-SPQESQSRQ---IRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSP 543 RLFGI L+ +S M R I D HS+P +S++ VS + ++ SP+E QS+Q RS TKV MQG+ VGRAVDL Y +L+ +E++FDI+G+L S +W++V+T PW EFC+MV++IFI++ EEVKK++P Sbjct: 454 RLFGIDLMSSSLAVPEEKTAPM-------RPINISKPTMDSHSDP----KSEISKVSEEKKQEPAEGSPKEVQSKQSSSTRSRTKVQMQGVPVGRAVDLNALKGYNELIDDIEKLFDIKGEL-RSRNQWEIVFTDDEGDMMLVGDDPWPEFCNMVKRIFIWSKEEVKKMTP 612
BLAST of CX294823 vs. ExPASy Swiss-Prot
Match: ARFR_ARATH (Auxin response factor 18 OS=Arabidopsis thaliana GN=ARF18 PE=2 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 2.875e-22 Identity = 60/139 (43.17%), Postives = 82/139 (58.99%), Query Frame = 1 Query: 169 SEPSNINRSDVPSVSCDAEKSCLRSPQESQSRQ-----IRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSPKVKLPGNEE 570 + P+ I + P +C A K S S Q RS TKV MQGIAVGRAVDLT Y++L+ +LEEMF+I+G L + KW VV+T PW+EFC M +KIFIY+++EVKK++ K+K+ + E Sbjct: 450 NSPAPIPQDKQPMDTCGAAKCQEPITPTSMSEQKKQQTSRSRTKVQMQGIAVGRAVDLTLLKSYDELIDELEEMFEIQGQLL-ARDKWIVVFTDDEGDMMLAGDDPWNEFCKMAKKIFIYSSDEVKKMTTKLKISSSLE 587 The following BLAST results are available for this feature:
BLAST of CX294823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
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Sequences
The
following sequences are available for this feature:
EST sequence >CX294823 ID=CX294823; Name=CX294823; organism=Citrus clementina; type=EST; length=618bpback to top |