CX294823

Overview
NameCX294823
Unique NameCX294823
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length618
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig581 contig Ccv1_Contig581:1..618. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294823 vs. ExPASy Swiss-Prot
Match: ARFA_ARATH (Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 2.571e-63
Identity = 124/190 (65.26%), Postives = 141/190 (74.21%), Query Frame = 1
Query:   28 NGNTCRLFGIQLVDNSNVEEASPAFTMSGAMGDDRAIPCLDADSDQHSEPSNINRSDVPSVSCDAEKSCLRSPQESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSPKVKLPGNEELNAGKPDVE 597
            NGN CRLFG +LV+N NV+E   A ++SGA+  D+ +P  + DS Q SEP NIN+SD+PS S D EKS LRSPQESQSRQIRSCTKVHMQG AVGRA+DLTR +CYEDL KKLEEMFDI+G+L  STKKWQVVYT            PW+EFC MVRKIFIYT EEVKKLSPK KL  N  +   K D E
Sbjct:  461 NGNVCRLFGFELVENVNVDECFSAASVSGAVAVDQPVPSNEFDSGQQSEPLNINQSDIPSGSGDPEKSSLRSPQESQSRQIRSCTKVHMQGSAVGRAIDLTRSECYEDLFKKLEEMFDIKGELLESTKKWQVVYTDDEDDMMMVGDDPWNEFCGMVRKIFIYTPEEVKKLSPKNKLAVNARMQL-KADAE 649          
BLAST of CX294823 vs. ExPASy Swiss-Prot
Match: ARFI_ORYSJ (Auxin response factor 9 OS=Oryza sativa subsp. japonica GN=ARF9 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 8.876e-48
Identity = 101/173 (58.38%), Postives = 124/173 (71.68%), Query Frame = 1
Query:   40 CRLFGIQLVDNSNVEEASPAFTMSGAMGDDRAIPCLDADSDQHSEPSNINRSDVPSVSCDAEKSCLRSPQESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSPKVKLP 558
            CRLFGI++  +S VEEA PA T+SG +G D+ +  +D DSDQ S+PSN N+SD P  S +      RSP ESQSRQ+RSCTKV MQG+AVGRAVDLT+ + Y DL  KLEEMFDI+GDLC + K+WQVVYT            PW EFCSMV++I+IY+ EE K L+PK KLP
Sbjct:  479 CRLFGIEI--SSAVEEALPAATVSG-VGYDQTVLSVDVDSDQISQPSNGNKSDAPGTSSE------RSPLESQSRQVRSCTKVIMQGMAVGRAVDLTKLNGYGDLRSKLEEMFDIQGDLCPTLKRWQVVYTDDEDDMMLVGDDPWDEFCSMVKRIYIYSYEEAKLLAPKSKLP 642          
BLAST of CX294823 vs. ExPASy Swiss-Prot
Match: ARFG_ORYSJ (Auxin response factor 7 OS=Oryza sativa subsp. japonica GN=ARF7 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.385e-45
Identity = 96/173 (55.49%), Postives = 121/173 (69.94%), Query Frame = 1
Query:   40 CRLFGIQLVDNSNVEEASPAFTMSGAMGDDRAIPCLDADSDQHSEPSNINRSDVPSVSCDAEKSCLRSPQESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSPKVKLP 558
            CRLFGI++  +S VE  SP   +SG +G D+    +DA+SDQ S+PS+ N+SD P+ S +       SP E+QSRQ+RSCTKV MQG+AVGRAVDLTR   Y+DL  KLEEMFDI+G+L  S KKW+VVYT            PW EFCSMV++I+IYT EE K+L+PK KLP
Sbjct:  480 CRLFGIEI--SSAVEATSPLAAVSG-VGQDQPAASVDAESDQLSQPSHANKSDAPAASSEP------SPHETQSRQVRSCTKVIMQGMAVGRAVDLTRLHGYDDLRCKLEEMFDIQGELSASLKKWKVVYTDDEDDMMLVGDDPWPEFCSMVKRIYIYTYEEAKQLTPKSKLP 643          
BLAST of CX294823 vs. ExPASy Swiss-Prot
Match: ARFX_ORYSJ (Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.428e-29
Identity = 73/190 (38.42%), Postives = 107/190 (56.32%), Query Frame = 1
Query:    1 LVPNSARGGNGNTCRLFGIQLVDNSNVEE--ASPAFTMSGAMGDDRAIPCLDADSDQHSEPSN-INRSDVPSVSCDAEK--SCLRSPQESQSRQ----IRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSP 543
            ++ ++ +   G++C LFGI L   +  E   + P+    G +  D        + D+ S+PS  +   D        EK  SC    +  QS+Q     RSC KVH QGIA+GR++DLT+F CY++L+ +L++MFD  G+L  S+K W VVYT            PW+EFC+MV KIFIYT EEV+K++P
Sbjct:  620 VIDHNVQKAKGSSCMLFGISLDSPAKPELLISPPSVAFDGKLQQDAL------EEDECSDPSKTVKPLDGAQHDSAREKHQSCPDGTKNIQSKQQNGSSRSCKKVHKQGIALGRSIDLTKFTCYDELIAELDQMFDFNGELNSSSKNWMVVYTDNEGDMMLVGDDPWNEFCNMVHKIFIYTREEVQKMNP 803          
BLAST of CX294823 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 4.287e-26
Identity = 73/184 (39.67%), Postives = 106/184 (57.61%), Query Frame = 1
Query:   13 SARGGNGNTCRLFGIQLVDNSNVEEA--SPAFTMSGAMGDDR-AIPCLDADSDQH--SEPSNINRSDVPSVSCDAEKSCLRSPQESQSR--QIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSP 543
            +A+   GN CRLFGI L +N N  ++  S    ++ A G  + A P +   SDQ   S+ +N +R        +        P+++Q++    RSCTKVH QGIA+GR+VDL++F  YE+L+ +L+ +F+  G+L    K W +VYT            PW EFC MVRKIFIYT EEV+K++P
Sbjct:  646 TAKSREGN-CRLFGIPLTNNMNGTDSTMSQRNNLNDAAGLTQIASPKVQDLSDQSKGSKSTNDHREQGRPFQTNNPH-----PKDAQTKTNSSRSCTKVHKQGIALGRSVDLSKFQNYEELVAELDRLFEFNGELMAPKKDWLIVYTDEENDMMLVGDDPWQEFCCMVRKIFIYTKEEVRKMNP 823          
BLAST of CX294823 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSJ (Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.127e-25
Identity = 72/194 (37.11%), Postives = 102/194 (52.58%), Query Frame = 1
Query:   31 GNTCRLFGIQLVDNSNVE--EASPAFTMSGAMGDDRAIPCLDADS---DQHSEPSNINRS-DVPSVSCDAEKSCLRSPQ-----ESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSPKVKLPGNEELNA 579
            G +C+LFGI L   +  E  ++  +    G      A      D    ++ S+PS   +  D P      EK   +        +SQ    RSC KVH QGIA+GR+VDLT+F+ YE+L+ +L++MFD  G+L G  K+W VVYT            PW EFC MV KIFIYT EEV++++P      +E+ +A
Sbjct:  634 GASCKLFGIHLDSPAKSEPLKSPSSVVYDGTPQTPGATEWRRPDVTEVEKCSDPSKAMKPLDTPQPDSVPEKPSSQQASRNMSCKSQGVSTRSCKKVHKQGIALGRSVDLTKFNGYEELIAELDDMFDFNGELKGPKKEWMVVYTDNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGTLNSRSEDSHA 827          
BLAST of CX294823 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSI (Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.127e-25
Identity = 72/194 (37.11%), Postives = 102/194 (52.58%), Query Frame = 1
Query:   31 GNTCRLFGIQLVDNSNVE--EASPAFTMSGAMGDDRAIPCLDADS---DQHSEPSNINRS-DVPSVSCDAEKSCLRSPQ-----ESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSPKVKLPGNEELNA 579
            G +C+LFGI L   +  E  ++  +    G      A      D    ++ S+PS   +  D P      EK   +        +SQ    RSC KVH QGIA+GR+VDLT+F+ YE+L+ +L++MFD  G+L G  K+W VVYT            PW EFC MV KIFIYT EEV++++P      +E+ +A
Sbjct:  634 GASCKLFGIHLDSPAKSEPLKSPSSVVYDGTPQTPGATEWRRPDVTEVEKCSDPSKAMKPLDTPQPDSVPEKPSSQQASRNMSCKSQGVSTRSCKKVHKQGIALGRSVDLTKFNGYEELIAELDDMFDFNGELKGPKKEWMVVYTDNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGTLNSRSEDSHA 827          
BLAST of CX294823 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.629e-25
Identity = 52/117 (44.44%), Postives = 77/117 (65.81%), Query Frame = 1
Query:  220 AEKSCLRSPQESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSPKVKLPGNEE 570
            A++S      ++Q    RSCTKVH QG+A+GR+VDL++F  Y++L  +L++MF+ +G+L  S K WQ+VYT            PW EFCS+VRKI+IYT EEV+K++ K   P  ++
Sbjct:  675 AQQSSKDVQSKTQVASTRSCTKVHKQGVALGRSVDLSKFSNYDELKAELDKMFEFDGELVSSNKNWQIVYTDNEGDMMLVGDDPWEEFCSIVRKIYIYTKEEVQKMNSKSNAPRKDD 791          
BLAST of CX294823 vs. ExPASy Swiss-Prot
Match: ARFI_ARATH (Auxin response factor 9 OS=Arabidopsis thaliana GN=ARF9 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.686e-22
Identity = 66/171 (38.60%), Postives = 96/171 (56.14%), Query Frame = 1
Query:   43 RLFGIQLVDNSNVEEASPAFTMSGAMGDDRAIPCLDADSDQHSEPSNINRSDVPSVSCDAEKSCLR-SPQESQSRQ---IRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSP 543
            RLFGI L+ +S          M       R I       D HS+P    +S++  VS + ++     SP+E QS+Q    RS TKV MQG+ VGRAVDL     Y +L+  +E++FDI+G+L  S  +W++V+T            PW EFC+MV++IFI++ EEVKK++P
Sbjct:  454 RLFGIDLMSSSLAVPEEKTAPM-------RPINISKPTMDSHSDP----KSEISKVSEEKKQEPAEGSPKEVQSKQSSSTRSRTKVQMQGVPVGRAVDLNALKGYNELIDDIEKLFDIKGEL-RSRNQWEIVFTDDEGDMMLVGDDPWPEFCNMVKRIFIWSKEEVKKMTP 612          
BLAST of CX294823 vs. ExPASy Swiss-Prot
Match: ARFR_ARATH (Auxin response factor 18 OS=Arabidopsis thaliana GN=ARF18 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.875e-22
Identity = 60/139 (43.17%), Postives = 82/139 (58.99%), Query Frame = 1
Query:  169 SEPSNINRSDVPSVSCDAEKSCLRSPQESQSRQ-----IRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSPKVKLPGNEE 570
            + P+ I +   P  +C A K        S S Q      RS TKV MQGIAVGRAVDLT    Y++L+ +LEEMF+I+G L  +  KW VV+T            PW+EFC M +KIFIY+++EVKK++ K+K+  + E
Sbjct:  450 NSPAPIPQDKQPMDTCGAAKCQEPITPTSMSEQKKQQTSRSRTKVQMQGIAVGRAVDLTLLKSYDELIDELEEMFEIQGQLL-ARDKWIVVFTDDEGDMMLAGDDPWNEFCKMAKKIFIYSSDEVKKMTTKLKISSSLE 587          
The following BLAST results are available for this feature:
BLAST of CX294823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
ARFA_ARATH2.571e-6365.26Auxin response factor 1 OS=Arabidopsis thaliana GN... [more]
ARFI_ORYSJ8.876e-4858.38Auxin response factor 9 OS=Oryza sativa subsp. jap... [more]
ARFG_ORYSJ5.385e-4555.49Auxin response factor 7 OS=Oryza sativa subsp. jap... [more]
ARFX_ORYSJ2.428e-2938.42Auxin response factor 24 OS=Oryza sativa subsp. ja... [more]
ARFB_ARATH4.287e-2639.67Auxin response factor 2 OS=Arabidopsis thaliana GN... [more]
ARFW_ORYSJ2.127e-2537.11Auxin response factor 23 OS=Oryza sativa subsp. ja... [more]
ARFW_ORYSI2.127e-2537.11Auxin response factor 23 OS=Oryza sativa subsp. in... [more]
ARFD_ORYSJ3.629e-2544.44Auxin response factor 4 OS=Oryza sativa subsp. jap... [more]
ARFI_ARATH1.686e-2238.60Auxin response factor 9 OS=Arabidopsis thaliana GN... [more]
ARFR_ARATH2.875e-2243.17Auxin response factor 18 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionC05056D05SK PhIFruit1 Citrus clementina cDNA clone C05056D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294823 ID=CX294823; Name=CX294823; organism=Citrus clementina; type=EST; length=618bp
CTCGTGCCGAATTCGGCACGAGGGGGCAATGGGAACACCTGCAGGCTATT
TGGCATTCAGCTCGTTGACAACTCGAATGTAGAAGAAGCTTCACCTGCTT
TTACCATGTCTGGAGCAATGGGGGATGATCGAGCAATTCCATGTTTAGAT
GCAGACTCTGACCAGCATTCTGAACCATCAAATATTAATCGATCTGACGT
TCCTTCTGTAAGTTGTGATGCAGAGAAATCGTGCCTGAGATCTCCTCAGG
AGTCTCAAAGCAGGCAGATTCGAAGTTGCACAAAGGTTCATATGCAAGGA
ATTGCAGTTGGGAGGGCTGTTGATTTGACACGATTTGACTGTTATGAAGA
CCTTCTCAAGAAACTGGAGGAGATGTTTGACATTGAGGGAGACCTGTGTG
GATCAACCAAGAAGTGGCAAGTGGTCTACACTGATGATGAAGATGACATG
ATGATGGTTGGAGATGATCCATGGCATGAGTTCTGTAGCATGGTGAGGAA
AATTTTCATCTACACAGCAGAAGAAGTAAAGAAGCTGTCGCCCAAGGTAA
AACTTCCAGGTAACGAGGAGCTCAATGCAGGCAAGCCAGATGTTGAAGTG
GTTGTCACACTGATGATC
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