CX294825

Overview
NameCX294825
Unique NameCX294825
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig582 contig Ccv1_Contig582:1..653. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294825 vs. ExPASy Swiss-Prot
Match: MTHR_ORYSJ (Probable methylenetetrahydrofolate reductase OS=Oryza sativa subsp. japonica GN=Os03g0815200 PE=2 SV=1)

HSP 1 Score: 383.259 bits (983), Expect = 6.110e-106
Identity = 181/213 (84.98%), Postives = 196/213 (92.02%), Query Frame = 2
Query:    2 IKTVHLYTLNMEKSALAILLNLGLIEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKVTALVDKSKLFHS 640
            IKT+HLYTLNMEKSAL IL+NLGLIEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSY+SRT+GWDQYP GRWGDSRNPSYGAL+D+QF RPR R KKL EEWAVP+KSVEDI E+F N+C GKL SSPWSELDGLQPETKII++QL KIN KGFLTINSQPAVNGERSDS+SVGWGGPGGYVYQKAYLEFFCS EK+  L++KSK F S
Sbjct:  279 IKTLHLYTLNMEKSALGILMNLGLIEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYISRTLGWDQYPHGRWGDSRNPSYGALTDYQFTRPRGRGKKLQEEWAVPVKSVEDINERFMNFCQGKLTSSPWSELDGLQPETKIIDDQLVKINQKGFLTINSQPAVNGERSDSTSVGWGGPGGYVYQKAYLEFFCSKEKLDQLIEKSKAFPS 491          
BLAST of CX294825 vs. ExPASy Swiss-Prot
Match: MTHR1_MAIZE (Methylenetetrahydrofolate reductase 1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 370.163 bits (949), Expect = 5.353e-102
Identity = 173/213 (81.22%), Postives = 190/213 (89.20%), Query Frame = 2
Query:    2 IKTVHLYTLNMEKSALAILLNLGLIEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKVTALVDKSKLFHS 640
            IKT+HLYTLNM+KSA+ IL+NLGLIEESK+SR LPWRP TNVFRVKEDVRPIFWANRPKSYL RT+GWDQYP GRWGDSRNPSYGAL+DHQF RPR R KKL EEWAVPLKSVEDI E+F N+C GKL SSPWSELDGLQPETKII++QL  IN KGFLTINSQPAVNGE+SDS +VGWGGPGGYVYQKAYLEFFC+ EK+  L++K K F S
Sbjct:  279 IKTLHLYTLNMDKSAIGILMNLGLIEESKVSRPLPWRPATNVFRVKEDVRPIFWANRPKSYLKRTLGWDQYPHGRWGDSRNPSYGALTDHQFTRPRGRGKKLQEEWAVPLKSVEDISERFTNFCQGKLTSSPWSELDGLQPETKIIDDQLVNINQKGFLTINSQPAVNGEKSDSPTVGWGGPGGYVYQKAYLEFFCAKEKLDQLIEKIKAFPS 491          
BLAST of CX294825 vs. ExPASy Swiss-Prot
Match: MTHR2_ARATH (Methylenetetrahydrofolate reductase 2 OS=Arabidopsis thaliana GN=MTHFR2 PE=1 SV=2)

HSP 1 Score: 358.992 bits (920), Expect = 1.234e-98
Identity = 168/213 (78.87%), Postives = 189/213 (88.73%), Query Frame = 2
Query:    2 IKTVHLYTLNMEKSALAILLNLGLIEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKVTALVDKSKLFHS 640
            +K++HLYTLNMEKSALAIL+NLG+I+ESKISRSLPWR P NVFR KEDVRPIFWANRPKSY+SRT GW+ +P+GRWGDSR+ SYGALSDHQF RPR+RDKKL +EW VPLKSVEDI EKFK  CLG L+SSPWSELDGLQPET+IINEQL K+N KGFLTINSQP+VN ERSDS +VGWGGP GYVYQKAYLEFFCS EK+ A+V+K K   S
Sbjct:  279 VKSLHLYTLNMEKSALAILMNLGMIDESKISRSLPWRRPANVFRTKEDVRPIFWANRPKSYISRTKGWEDFPQGRWGDSRSASYGALSDHQFSRPRARDKKLQQEWVVPLKSVEDIQEKFKELCLGNLKSSPWSELDGLQPETRIINEQLIKVNSKGFLTINSQPSVNAERSDSPTVGWGGPVGYVYQKAYLEFFCSKEKLDAVVEKCKALPS 491          
BLAST of CX294825 vs. ExPASy Swiss-Prot
Match: MTHR1_ARATH (Methylenetetrahydrofolate reductase 1 OS=Arabidopsis thaliana GN=MTHFR1 PE=1 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 1.412e-94
Identity = 157/213 (73.71%), Postives = 183/213 (85.92%), Query Frame = 2
Query:    2 IKTVHLYTLNMEKSALAILLNLGLIEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKVTALVDKSKLFHS 640
            I ++HLYTLN++KSA+ IL+NLGLI+ESKISRSLPWR P NVFR KEDVRPIFWANRPKSY+SRT GW+ +P GRWGDS + +Y  LSD+QF RP+ RDKKL +EW VPLKS+ED+ EKFK  C+G L+SSPWSELDGLQPETKIINEQLGKIN  GFLTINSQP+VN  +SDS ++GWGGPGGYVYQKAYLEFFCS +K+  LV+KSK F S
Sbjct:  279 ITSLHLYTLNVDKSAIGILMNLGLIDESKISRSLPWRRPANVFRTKEDVRPIFWANRPKSYISRTKGWNDFPHGRWGDSHSAAYSTLSDYQFARPKGRDKKLQQEWVVPLKSIEDVQEKFKELCIGNLKSSPWSELDGLQPETKIINEQLGKINSNGFLTINSQPSVNAAKSDSPAIGWGGPGGYVYQKAYLEFFCSKDKLDTLVEKSKAFPS 491          
BLAST of CX294825 vs. ExPASy Swiss-Prot
Match: MTHR_BOVIN (Methylenetetrahydrofolate reductase OS=Bos taurus GN=MTHFR PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.015e-45
Identity = 95/218 (43.58%), Postives = 138/218 (63.30%), Query Frame = 2
Query:   11 VHLYTLNMEKSALAILLNLGL-IEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQ--FMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLG-------KLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKVTALVDKSKLF 634
            +H YTLN E + + +L  LGL IE+ +  R LPW    +  R  EDVRPIFWA+RPKSY+ RT  WD++P GRWG+S +P++G L D+   +++ +S  ++L + W   L S E +++ F ++  G       K+   PW++ + L  ET ++ E+L ++N +G LTINSQP +NG+ S    VGWG  GGYV+QKAYLEFF S E V AL+   K +
Sbjct:  317 LHFYTLNREVATIEVLKRLGLWIEDPR--RPLPWALSAHPKRRVEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPAFGELKDYYLFYLKSKSPKEELLKMWGEELTSEESVFQVFAHHLSGEPNQNGYKVTCLPWND-EPLAAETSLMKEELLRVNRRGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAYLEFFTSRETVEALLQVLKKY 531          
BLAST of CX294825 vs. ExPASy Swiss-Prot
Match: MTHR_MOUSE (Methylenetetrahydrofolate reductase OS=Mus musculus GN=Mthfr PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.856e-45
Identity = 93/217 (42.86%), Postives = 135/217 (62.21%), Query Frame = 2
Query:   11 VHLYTLNMEKSALAILLNLGLIEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQ--FMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLG-------KLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKVTALVDKSKLF 634
            +H YTLN E + + +L  LG+  E    R LPW    +  R +EDVRPIFWA+RPKSY+ RT  WD++P GRWG+S +P++G L D+   +++ +S  ++L + W   L S E ++E F++Y  G       ++   PW++ + L  ET ++ E+L ++N  G LTINSQP +N + S    VGWG  GGYV+QKAYLEFF S E V AL+   K +
Sbjct:  317 LHFYTLNREVATMEVLKQLGMWTEDP-RRPLPWALSAHPKRREEDVRPIFWASRPKSYIYRTQDWDEFPNGRWGNSSSPAFGELKDYYLFYLKSKSPREELLKMWGEELTSEESVFEVFEHYLSGEPNRHGYRVTCLPWND-EPLAAETSLMKEELLRVNRLGILTINSQPNINAKPSSDPVVGWGPSGGYVFQKAYLEFFTSRETVEALLQVLKTY 531          
BLAST of CX294825 vs. ExPASy Swiss-Prot
Match: MTHR_HUMAN (Methylenetetrahydrofolate reductase OS=Homo sapiens GN=MTHFR PE=1 SV=3)

HSP 1 Score: 179.874 bits (455), Expect = 1.026e-44
Identity = 94/217 (43.32%), Postives = 133/217 (61.29%), Query Frame = 2
Query:   11 VHLYTLNMEKSALAILLNLGLIEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQ--FMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLG-------KLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKVTALVDKSKLF 634
            +H YTLN E +   +L  LG+  E    R LPW    +  R +EDVRPIFWA+RPKSY+ RT  WD++P GRWG+S +P++G L D+   +++ +S  ++L + W   L S E ++E F  Y  G       K+   PW++ + L  ET ++ E+L ++N +G LTINSQP +NG+ S    VGWG  GGYV+QKAYLEFF S E   AL+   K +
Sbjct:  318 LHFYTLNREMATTEVLKRLGMWTEDP-RRPLPWALSAHPKRREEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPAFGELKDYYLFYLKSKSPKEELLKMWGEELTSEESVFEVFVLYLSGEPNRNGHKVTCLPWND-EPLAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAYLEFFTSRETAEALLQVLKKY 532          
BLAST of CX294825 vs. ExPASy Swiss-Prot
Match: MTHR_MACFA (Methylenetetrahydrofolate reductase OS=Macaca fascicularis GN=MTHFR PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.985e-44
Identity = 94/217 (43.32%), Postives = 132/217 (60.83%), Query Frame = 2
Query:   11 VHLYTLNMEKSALAILLNLGLIEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQ--FMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLG-------KLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKVTALVDKSKLF 634
            +H YTLN E +   +L  LG+  E    R LPW    +  R +EDVRPIFWA+RPKSY+ RT  WD++P GRWG+S +P++G L D+   +++ +S  + L + W   L S E ++E F  Y  G       K+   PW++ + L  ET ++ E+L ++N +G LTINSQP +NG+ S    VGWG  GGYV+QKAYLEFF S E   AL+   K +
Sbjct:  318 LHFYTLNREMATTEVLKRLGMWTEDP-RRPLPWALSAHPKRREEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPAFGELKDYYLFYLKSKSPRELLLKMWGEELTSEESVFEVFVLYLSGEPNRNGHKVTCLPWND-EPLAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPVVGWGPSGGYVFQKAYLEFFTSRETAEALLQVLKKY 532          
BLAST of CX294825 vs. ExPASy Swiss-Prot
Match: MTHR1_SCHPO (Methylenetetrahydrofolate reductase 1 OS=Schizosaccharomyces pombe GN=met9 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.615e-40
Identity = 92/222 (41.44%), Postives = 126/222 (56.76%), Query Frame = 2
Query:    2 IKTVHLYTLNMEKSALAILLNLGLIEESKISRSLPWRPPTNVF---------RVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKVTALVDKSKLFHS 640
            I  +H YT+N+EK+   I+  LGL++E+      P     NV          R+ E VRPIFW  R +SY+SRT  WD+ P GRWGDSR+P++G     ++   R   K++   W  P KS  +I + F  YC  K+ S PWS+L  +  E  +I +QL  +N   FLTINSQPA+NGE+S     GWG P GYV+QK Y+EFF  P  +  L +  K  +S
Sbjct:  270 ITRLHFYTMNLEKAVKMIIERLGLLDENLA----PIVDTNNVELTNASSQDRRINEGVRPIFWRTRNESYVSRTDQWDELPHGRWGDSRSPAFGEFDAIRYGL-RMSPKEITTSWGSP-KSYSEIGDLFARYCEKKISSLPWSDLP-ISDEADLIRDQLLSMNRNAFLTINSQPALNGEKSSHPVFGWGPPNGYVFQKPYVEFFVHPSLLNELKETVKKLNS 484          
BLAST of CX294825 vs. ExPASy Swiss-Prot
Match: MTHR_CAEEL (Probable methylenetetrahydrofolate reductase OS=Caenorhabditis elegans GN=C06A8.1 PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.695e-39
Identity = 92/215 (42.79%), Postives = 128/215 (59.53%), Query Frame = 2
Query:    8 TVHLYTLNMEKSALAILLNLGLIEESKISRSLPWRPPT-NVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQFMR---PRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLG-------KLRSSPWSELD-GLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKVTALV 616
            ++HLYT+N E S   IL +LGL +     R  PW+  + +  R  E VRPI+W+ RP+SY++RT  WDQ+P GRWG+S +P++G +S +        R+ D +L   +   ++S ED+   F NY          K+   PW+E + G+QPET +I+EQL   N  G LT+NSQP+VNG  S    VGWG PGGY YQKAYLE F + E    L+
Sbjct:  330 SIHLYTMNREGSIREILKSLGLWKLEG-DRVFPWKNRSQHPIRCLESVRPIYWSFRPRSYITRTRDWDQFPNGRWGNSSSPAFGDVSSYYLSNLTTVRNADDRL-AMFGANIESFEDVKRVFINYITQAPNADGVKVTVLPWTEAETGVQPETSLISEQLVWCNENGILTVNSQPSVNGAPSTDPLVGWGKPGGYCYQKAYLECFMTAELSDKLI 542          
The following BLAST results are available for this feature:
BLAST of CX294825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
MTHR_ORYSJ6.110e-10684.98Probable methylenetetrahydrofolate reductase OS=Or... [more]
MTHR1_MAIZE5.353e-10281.22Methylenetetrahydrofolate reductase 1 OS=Zea mays ... [more]
MTHR2_ARATH1.234e-9878.87Methylenetetrahydrofolate reductase 2 OS=Arabidops... [more]
MTHR1_ARATH1.412e-9473.71Methylenetetrahydrofolate reductase 1 OS=Arabidops... [more]
MTHR_BOVIN6.015e-4543.58Methylenetetrahydrofolate reductase OS=Bos taurus ... [more]
MTHR_MOUSE7.856e-4542.86Methylenetetrahydrofolate reductase OS=Mus musculu... [more]
MTHR_HUMAN1.026e-4443.32Methylenetetrahydrofolate reductase OS=Homo sapien... [more]
MTHR_MACFA2.985e-4443.32Methylenetetrahydrofolate reductase OS=Macaca fasc... [more]
MTHR1_SCHPO2.615e-4041.44Methylenetetrahydrofolate reductase 1 OS=Schizosac... [more]
MTHR_CAEEL1.695e-3942.79Probable methylenetetrahydrofolate reductase OS=Ca... [more]

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Properties
Property NameValue
Genbank descriptionC05056D08SK PhIFruit1 Citrus clementina cDNA clone C05056D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294825 ID=CX294825; Name=CX294825; organism=Citrus clementina; type=EST; length=653bp
GATTAAGACTGTGCATCTTTATACTCTAAACATGGAGAAATCTGCATTAG
CTATATTATTGAATCTTGGTTTGATTGAAGAGTCCAAAATTTCCAGATCC
TTACCCTGGAGACCCCCTACTAATGTTTTCCGCGTTAAGGAAGATGTTCG
TCCAATATTTTGGGCTAATCGTCCAAAGAGCTACTTATCAAGGACAGTTG
GTTGGGACCAGTATCCACGTGGACGATGGGGTGATTCTCGTAACCCATCA
TATGGTGCTTTATCTGACCATCAGTTTATGCGGCCTCGTTCACGTGACAA
GAAACTTCATGAAGAATGGGCTGTCCCCTTGAAAAGTGTTGAAGATATCT
ATGAAAAATTTAAGAATTACTGCCTTGGGAAATTGAGAAGCAGTCCTTGG
TCAGAGTTAGACGGGCTTCAGCCAGAGACCAAAATCATAAATGAACAGCT
TGGAAAGATCAATGTGAAAGGTTTCCTCACTATCAACAGCCAGCCGGCAG
TCAATGGTGAAAGATCCGATTCATCTTCTGTTGGTTGGGGTGGGCCAGGA
GGATATGTTTATCAGAAAGCATATCTAGAGTTTTTCTGCTCACCAGAGAA
AGTGACTGCACTTGTTGACAAAAGCAAGCTCTTCCATTCATAACTTCATG
GCT
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