CX294828

Overview
NameCX294828
Unique NameCX294828
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig583 contig Ccv1_Contig583:1..576. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294828 vs. ExPASy Swiss-Prot
Match: HSBP1_PONAB (Heat shock factor-binding protein 1 OS=Pongo abelii GN=HSBP1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.685e-11
Identity = 33/59 (55.93%), Postives = 45/59 (76.27%), Query Frame = 2
Query:  134 DPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVE 310
            DPK +  D+T  VQ LLQQMQ +FQTMSD I+ +ID+M +RI++LE++I DL  + GVE
Sbjct:    5 DPK-TVQDLTSVVQTLLQQMQDKFQTMSDQIIGRIDDMSSRIDDLEKNIADLMTQAGVE 62          
BLAST of CX294828 vs. ExPASy Swiss-Prot
Match: HSBP1_HUMAN (Heat shock factor-binding protein 1 OS=Homo sapiens GN=HSBP1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.685e-11
Identity = 33/59 (55.93%), Postives = 45/59 (76.27%), Query Frame = 2
Query:  134 DPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVE 310
            DPK +  D+T  VQ LLQQMQ +FQTMSD I+ +ID+M +RI++LE++I DL  + GVE
Sbjct:    5 DPK-TVQDLTSVVQTLLQQMQDKFQTMSDQIIGRIDDMSSRIDDLEKNIADLMTQAGVE 62          
BLAST of CX294828 vs. ExPASy Swiss-Prot
Match: HSBP1_BOVIN (Heat shock factor-binding protein 1 OS=Bos taurus GN=HSBP1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.685e-11
Identity = 33/59 (55.93%), Postives = 45/59 (76.27%), Query Frame = 2
Query:  134 DPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVE 310
            DPK +  D+T  VQ LLQQMQ +FQTMSD I+ +ID+M +RI++LE++I DL  + GVE
Sbjct:    5 DPK-TVQDLTSVVQTLLQQMQDKFQTMSDQIIGRIDDMSSRIDDLEKNIADLMTQAGVE 62          
The following BLAST results are available for this feature:
BLAST of CX294828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
HSBP1_PONAB9.685e-1155.93Heat shock factor-binding protein 1 OS=Pongo abeli... [more]
HSBP1_HUMAN9.685e-1155.93Heat shock factor-binding protein 1 OS=Homo sapien... [more]
HSBP1_BOVIN9.685e-1155.93Heat shock factor-binding protein 1 OS=Bos taurus ... [more]
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Properties
Property NameValue
Genbank descriptionC05056D11SK PhIFruit1 Citrus clementina cDNA clone C05056D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294828 ID=CX294828; Name=CX294828; organism=Citrus clementina; type=EST; length=576bp
ATCTTTGTCTTAGATTAGGCACAGGCGATCGTTTATCGGCATTTTAACTC
TTGGCAATCTATCTACTGTACGGCAGAGACCAGTAGAGAGAGATCCGCTA
GCGTAGCGAGCAATGGACGGACATGATTCGGAAGATCCCAAGCAAAGTAC
TGCTGATATGACTGTTTTCGTGCAAAATCTTCTTCAACAGATGCAGTCCA
GGTTTCAGACAATGTCTGACTCCATTGTGACAAAGATTGATGAGATGGGA
AACCGAATAAATGAGTTGGAGCAGAGCATCAATGATCTAAGAGCAGAGAT
GGGAGTGGAGGGTTCTCCATCTCCGTTGACCCCATCCAAGACAAACTCGG
GTGAAGGGAAGCCAGAGGAAGGATCAGCATAGAATAGTAAAAGGGTGTGC
TTGTGCAGTGAATGCTGGCTTTAGTTTCTATGCTAGCTTTTTGTTTGTGT
TTCTGGTTGAGAGAGATCATACTGATATGAGTGGGCTTAGTTGGTTCTGT
ATTTGATATTTTCTGGTTTTCTGTGTACTGACAACTGAGGGCAGCTACTT
CGTATTTGTCAGTAATTACTTTCTTG
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