CX294833
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RK6_ARATH (50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana GN=RPL6 PE=1 SV=1) HSP 1 Score: 279.256 bits (713), Expect = 1.124e-74 Identity = 144/193 (74.61%), Postives = 165/193 (85.49%), Query Frame = 2 Query: 47 MASSIASSFHTSNLKSIFFGERNGFSMSNVPVNRVGFSRKTIECKESRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDS-FLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAAS 622 MASS+ SSF +S F G+RN F +S+ P +VG+S KTIECKESRIGKQPI VPSNVTI L GQDLKVKGPLGEL+L YPREV++ +E+S FLRV+KTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKL +VGVGYRA ++G+ LVL+LGFSHPV+M IPD + V VEENTRITVSGYDKS IGQFAA+ Sbjct: 1 MASSLVSSFQP---RSAFLGDRNVFKVSSTPFAQVGYSSKTIECKESRIGKQPIAVPSNVTIALEGQDLKVKGPLGELALTYPREVELTKEESGFLRVKKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLILVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSEIGQFAAT 190
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_CYAA5 (50S ribosomal protein L6 OS=Cyanothece sp. (strain ATCC 51142) GN=rplF PE=3 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 5.455e-37 Identity = 76/145 (52.41%), Postives = 101/145 (69.66%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SRIGK+PI +P+ VTI + GQ + VKGP G L L P EV V++E + V++ ++R A + HGLFRTL NM+ GVS+GFEK+L + GVGYRA +G L L++G+S PV MT+P GI V VE NT++ VSG DK +G AA Sbjct: 2 SRIGKKPIPLPNKVTIDIKGQHIAVKGPKGSLELDLPSEVTVNQEGETVEVQRVDDSRTARERHGLFRTLVANMIQGVSQGFEKRLNIQGVGYRAQAQGSKLTLNVGYSKPVEMTMPQGINVAVENNTQVVVSGIDKEIVGNIAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_CYAP7 (50S ribosomal protein L6 OS=Cyanothece sp. (strain PCC 7424) GN=rplF PE=3 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 9.305e-37 Identity = 76/145 (52.41%), Postives = 101/145 (69.66%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SRIGK+PI +P+ VT+ + G + VKGP GEL P V V++++ LRV + ++R A Q HGL RTL NMV GVSKGFEK+L++ GVGYRAA +G L L++G+S PV M +P GI V VE+NT IT++G DK +G AA Sbjct: 2 SRIGKRPITIPNKVTVNIDGSHVAVKGPKGELQRTLPTLVIVEQDEGVLRVVRQDDSRTARQRHGLCRTLVSNMVEGVSKGFEKRLEIQGVGYRAAAQGSKLTLNVGYSKPVEMDMPSGIGVAVEKNTEITITGIDKEIVGNVAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_TRIEI (50S ribosomal protein L6 OS=Trichodesmium erythraeum (strain IMS101) GN=rplF PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 1.587e-36 Identity = 76/145 (52.41%), Postives = 103/145 (71.03%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SRIGK PI +P VTIT+ GQ + VKGPLGELS V P E+ V +++ + V+ ++RRA Q +GL RTL NMV GVSKG+EK+L + GVGYRA ++G+ LVL++G+S PV M P+GI + VE NT + V+G +K +G AA Sbjct: 2 SRIGKLPIPIPKKVTITIEGQKVTVKGPLGELSRVLPPEIAVKEQENTIIVKPQEQSRRARQRYGLCRTLVANMVEGVSKGYEKRLVIQGVGYRAQVQGKTLVLNVGYSKPVEMPAPEGINIAVENNTNVIVNGINKELVGNTAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_ANASP (50S ribosomal protein L6 OS=Anabaena sp. (strain PCC 7120) GN=rplF PE=3 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 3.536e-36 Identity = 76/145 (52.41%), Postives = 102/145 (70.34%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SRIGK+PI VP+ V +T+ G + VKGP GELS P V V +E L+V + ETR + Q+HGL RTL NMV GVS+GF+++L++ GVGYRA ++G+ LVL++G+SH V++ PDGI VE NT + VSGYDK +G AA Sbjct: 2 SRIGKRPITVPAKVQVTIDGTKVVVKGPKGELSRELPANVSVSQEGETLQVTRRDETRTSRQLHGLSRTLVANMVEGVSQGFQRRLEIQGVGYRAQVQGRNLVLNMGYSHQVQIEPPDGIQFVVENNTNVIVSGYDKEIVGNTAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_THEEB (50S ribosomal protein L6 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplF PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 4.618e-36 Identity = 78/153 (50.98%), Postives = 106/153 (69.28%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEEN--------TRITVSGYDKSAIGQFAA 619 SRIGK+PI +P NVT+TL GQ + VKGP G+LS V+P EV V +E + V++ ++R A + HGL RTL NMV GVS+GF KKL++ GVGYRA L+G+ LVLS+G+SHPV + P+GI + +E+N T + VSG DK +G +A Sbjct: 2 SRIGKRPIPLPKNVTLTLDGQQVTVKGPKGQLSRVFPPEVNVVQEGEAIVVKRRDDSRPAKERHGLCRTLLANMVEGVSQGFTKKLEIQGVGYRAQLQGKTLVLSMGYSHPVEIVPPEGITLEIEDNQGKKVQQGTIVLVSGIDKELVGNTSA 154
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_ANAVT (50S ribosomal protein L6 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplF PE=3 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 6.031e-36 Identity = 75/145 (51.72%), Postives = 102/145 (70.34%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SRIGK+PI VP+ V +T+ G + VKGP GELS P V V +E L+V + ETR + Q+HGL RTL NMV GVS+GF+++L++ GVGYRA ++G+ L+L++G+SH V++ PDGI VE NT + VSGYDK +G AA Sbjct: 2 SRIGKRPITVPAKVQVTIDGTKVVVKGPKGELSRELPVNVSVSQEGETLQVTRRDETRTSRQLHGLSRTLVANMVEGVSQGFQRRLEIQGVGYRAQVQGRNLILNMGYSHQVQIEPPDGIQFAVENNTNVIVSGYDKEIVGNTAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_SYNR3 (50S ribosomal protein L6 OS=Synechococcus sp. (strain RCC307) GN=rplF PE=3 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 7.877e-36 Identity = 74/145 (51.03%), Postives = 99/145 (68.28%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SRIGK P+ +P V++ + G +KVKGP GEL V P V V + D+ + V + +RR+ + HGL RTL NMV GVSKGF KKL+++GVGYRA ++G+ LV+S G+SHPV M P+G+ VE NT +TVSG DK +G AA Sbjct: 2 SRIGKNPVPIPEKVSVEISGLTVKVKGPKGELERVLPDGVSVSQADNAVTVSPSDTSRRSRERHGLCRTLVANMVEGVSKGFSKKLEIIGVGYRAQVKGKKLVVSAGYSHPVEMDAPEGVTFAVENNTLVTVSGADKELVGNEAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_SYNJA (50S ribosomal protein L6 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplF PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 2.993e-35 Identity = 74/145 (51.03%), Postives = 100/145 (68.97%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SRIGK+PI +P+ V + + GQ + VKGP GELS P + V +E L+V + E+R A Q+HGL RTL NMV GVS+GFE++L++VGVGYRA+ +G L+L++G+SHPV + P GI + VE N I VSG DK +G AA Sbjct: 2 SRIGKRPIALPAKVEVQIEGQQISVKGPKGELSRSLPPLIAVHQEAQTLKVSRVNESRPARQLHGLCRTLVANMVDGVSRGFERRLELVGVGYRASTQGNKLILNVGYSHPVEIPFPPGIQIAVEGNNVIVVSGIDKELVGNTAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_NITWN (50S ribosomal protein L6 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rplF PE=3 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 3.909e-35 Identity = 73/145 (50.34%), Postives = 101/145 (69.66%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SRIGK+P+ VPS VT T+ GQ +K+KGP GEL V +V+V ED ++V ET+RA ++G R N+V GV+KGFEKKL+++GVGYRAAL+G+ L L+LG+SH V +P+GI + V + T IT++G D +GQ AA Sbjct: 2 SRIGKRPVTVPSGVTATVEGQTVKMKGPKGELRFVVHDDVEVKLEDGAVKVAPRYETKRAQALYGTARAQVANLVAGVTKGFEKKLEIIGVGYRAALQGKSLQLALGYSHDVNYAVPEGITIAVPKPTEITITGNDAQRVGQVAA 146 The following BLAST results are available for this feature:
BLAST of CX294833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX294833 ID=CX294833; Name=CX294833; organism=Citrus clementina; type=EST; length=623bpback to top |