CX294833

Overview
NameCX294833
Unique NameCX294833
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length623
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RK6_ARATH (50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana GN=RPL6 PE=1 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.124e-74
Identity = 144/193 (74.61%), Postives = 165/193 (85.49%), Query Frame = 2
Query:   47 MASSIASSFHTSNLKSIFFGERNGFSMSNVPVNRVGFSRKTIECKESRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDS-FLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAAS 622
            MASS+ SSF     +S F G+RN F +S+ P  +VG+S KTIECKESRIGKQPI VPSNVTI L GQDLKVKGPLGEL+L YPREV++ +E+S FLRV+KTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKL +VGVGYRA ++G+ LVL+LGFSHPV+M IPD + V VEENTRITVSGYDKS IGQFAA+
Sbjct:    1 MASSLVSSFQP---RSAFLGDRNVFKVSSTPFAQVGYSSKTIECKESRIGKQPIAVPSNVTIALEGQDLKVKGPLGELALTYPREVELTKEESGFLRVKKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLILVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSEIGQFAAT 190          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_CYAA5 (50S ribosomal protein L6 OS=Cyanothece sp. (strain ATCC 51142) GN=rplF PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.455e-37
Identity = 76/145 (52.41%), Postives = 101/145 (69.66%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SRIGK+PI +P+ VTI + GQ + VKGP G L L  P EV V++E   + V++  ++R A + HGLFRTL  NM+ GVS+GFEK+L + GVGYRA  +G  L L++G+S PV MT+P GI V VE NT++ VSG DK  +G  AA
Sbjct:    2 SRIGKKPIPLPNKVTIDIKGQHIAVKGPKGSLELDLPSEVTVNQEGETVEVQRVDDSRTARERHGLFRTLVANMIQGVSQGFEKRLNIQGVGYRAQAQGSKLTLNVGYSKPVEMTMPQGINVAVENNTQVVVSGIDKEIVGNIAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_CYAP7 (50S ribosomal protein L6 OS=Cyanothece sp. (strain PCC 7424) GN=rplF PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 9.305e-37
Identity = 76/145 (52.41%), Postives = 101/145 (69.66%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SRIGK+PI +P+ VT+ + G  + VKGP GEL    P  V V++++  LRV +  ++R A Q HGL RTL  NMV GVSKGFEK+L++ GVGYRAA +G  L L++G+S PV M +P GI V VE+NT IT++G DK  +G  AA
Sbjct:    2 SRIGKRPITIPNKVTVNIDGSHVAVKGPKGELQRTLPTLVIVEQDEGVLRVVRQDDSRTARQRHGLCRTLVSNMVEGVSKGFEKRLEIQGVGYRAAAQGSKLTLNVGYSKPVEMDMPSGIGVAVEKNTEITITGIDKEIVGNVAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_TRIEI (50S ribosomal protein L6 OS=Trichodesmium erythraeum (strain IMS101) GN=rplF PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.587e-36
Identity = 76/145 (52.41%), Postives = 103/145 (71.03%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SRIGK PI +P  VTIT+ GQ + VKGPLGELS V P E+ V  +++ + V+   ++RRA Q +GL RTL  NMV GVSKG+EK+L + GVGYRA ++G+ LVL++G+S PV M  P+GI + VE NT + V+G +K  +G  AA
Sbjct:    2 SRIGKLPIPIPKKVTITIEGQKVTVKGPLGELSRVLPPEIAVKEQENTIIVKPQEQSRRARQRYGLCRTLVANMVEGVSKGYEKRLVIQGVGYRAQVQGKTLVLNVGYSKPVEMPAPEGINIAVENNTNVIVNGINKELVGNTAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_ANASP (50S ribosomal protein L6 OS=Anabaena sp. (strain PCC 7120) GN=rplF PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.536e-36
Identity = 76/145 (52.41%), Postives = 102/145 (70.34%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SRIGK+PI VP+ V +T+ G  + VKGP GELS   P  V V +E   L+V +  ETR + Q+HGL RTL  NMV GVS+GF+++L++ GVGYRA ++G+ LVL++G+SH V++  PDGI   VE NT + VSGYDK  +G  AA
Sbjct:    2 SRIGKRPITVPAKVQVTIDGTKVVVKGPKGELSRELPANVSVSQEGETLQVTRRDETRTSRQLHGLSRTLVANMVEGVSQGFQRRLEIQGVGYRAQVQGRNLVLNMGYSHQVQIEPPDGIQFVVENNTNVIVSGYDKEIVGNTAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_THEEB (50S ribosomal protein L6 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplF PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.618e-36
Identity = 78/153 (50.98%), Postives = 106/153 (69.28%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEEN--------TRITVSGYDKSAIGQFAA 619
            SRIGK+PI +P NVT+TL GQ + VKGP G+LS V+P EV V +E   + V++  ++R A + HGL RTL  NMV GVS+GF KKL++ GVGYRA L+G+ LVLS+G+SHPV +  P+GI + +E+N        T + VSG DK  +G  +A
Sbjct:    2 SRIGKRPIPLPKNVTLTLDGQQVTVKGPKGQLSRVFPPEVNVVQEGEAIVVKRRDDSRPAKERHGLCRTLLANMVEGVSQGFTKKLEIQGVGYRAQLQGKTLVLSMGYSHPVEIVPPEGITLEIEDNQGKKVQQGTIVLVSGIDKELVGNTSA 154          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_ANAVT (50S ribosomal protein L6 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplF PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.031e-36
Identity = 75/145 (51.72%), Postives = 102/145 (70.34%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SRIGK+PI VP+ V +T+ G  + VKGP GELS   P  V V +E   L+V +  ETR + Q+HGL RTL  NMV GVS+GF+++L++ GVGYRA ++G+ L+L++G+SH V++  PDGI   VE NT + VSGYDK  +G  AA
Sbjct:    2 SRIGKRPITVPAKVQVTIDGTKVVVKGPKGELSRELPVNVSVSQEGETLQVTRRDETRTSRQLHGLSRTLVANMVEGVSQGFQRRLEIQGVGYRAQVQGRNLILNMGYSHQVQIEPPDGIQFAVENNTNVIVSGYDKEIVGNTAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_SYNR3 (50S ribosomal protein L6 OS=Synechococcus sp. (strain RCC307) GN=rplF PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.877e-36
Identity = 74/145 (51.03%), Postives = 99/145 (68.28%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SRIGK P+ +P  V++ + G  +KVKGP GEL  V P  V V + D+ + V  +  +RR+ + HGL RTL  NMV GVSKGF KKL+++GVGYRA ++G+ LV+S G+SHPV M  P+G+   VE NT +TVSG DK  +G  AA
Sbjct:    2 SRIGKNPVPIPEKVSVEISGLTVKVKGPKGELERVLPDGVSVSQADNAVTVSPSDTSRRSRERHGLCRTLVANMVEGVSKGFSKKLEIIGVGYRAQVKGKKLVVSAGYSHPVEMDAPEGVTFAVENNTLVTVSGADKELVGNEAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_SYNJA (50S ribosomal protein L6 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplF PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.993e-35
Identity = 74/145 (51.03%), Postives = 100/145 (68.97%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SRIGK+PI +P+ V + + GQ + VKGP GELS   P  + V +E   L+V +  E+R A Q+HGL RTL  NMV GVS+GFE++L++VGVGYRA+ +G  L+L++G+SHPV +  P GI + VE N  I VSG DK  +G  AA
Sbjct:    2 SRIGKRPIALPAKVEVQIEGQQISVKGPKGELSRSLPPLIAVHQEAQTLKVSRVNESRPARQLHGLCRTLVANMVDGVSRGFERRLELVGVGYRASTQGNKLILNVGYSHPVEIPFPPGIQIAVEGNNVIVVSGIDKELVGNTAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_NITWN (50S ribosomal protein L6 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rplF PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.909e-35
Identity = 73/145 (50.34%), Postives = 101/145 (69.66%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SRIGK+P+ VPS VT T+ GQ +K+KGP GEL  V   +V+V  ED  ++V    ET+RA  ++G  R    N+V GV+KGFEKKL+++GVGYRAAL+G+ L L+LG+SH V   +P+GI + V + T IT++G D   +GQ AA
Sbjct:    2 SRIGKRPVTVPSGVTATVEGQTVKMKGPKGELRFVVHDDVEVKLEDGAVKVAPRYETKRAQALYGTARAQVANLVAGVTKGFEKKLEIIGVGYRAALQGKSLQLALGYSHDVNYAVPEGITIAVPKPTEITITGNDAQRVGQVAA 146          
The following BLAST results are available for this feature:
BLAST of CX294833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK6_ARATH1.124e-7474.6150S ribosomal protein L6, chloroplastic OS=Arabido... [more]
RL6_CYAA55.455e-3752.4150S ribosomal protein L6 OS=Cyanothece sp. (strain... [more]
RL6_CYAP79.305e-3752.4150S ribosomal protein L6 OS=Cyanothece sp. (strain... [more]
RL6_TRIEI1.587e-3652.4150S ribosomal protein L6 OS=Trichodesmium erythrae... [more]
RL6_ANASP3.536e-3652.4150S ribosomal protein L6 OS=Anabaena sp. (strain P... [more]
RL6_THEEB4.618e-3650.9850S ribosomal protein L6 OS=Thermosynechococcus el... [more]
RL6_ANAVT6.031e-3651.7250S ribosomal protein L6 OS=Anabaena variabilis (s... [more]
RL6_SYNR37.877e-3651.0350S ribosomal protein L6 OS=Synechococcus sp. (str... [more]
RL6_SYNJA2.993e-3551.0350S ribosomal protein L6 OS=Synechococcus sp. (str... [more]
RL6_NITWN3.909e-3550.3450S ribosomal protein L6 OS=Nitrobacter winogradsk... [more]

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Properties
Property NameValue
Genbank descriptionC05056E04SK PhIFruit1 Citrus clementina cDNA clone C05056E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294833 ID=CX294833; Name=CX294833; organism=Citrus clementina; type=EST; length=623bp
AGGCAGGTGTTAAAAGTTGATTGATGCTCAAAGCCGCTTAAGCGAAATGG
CTTCTTCTATCGCCTCTTCTTTCCATACCAGCAATTTGAAGTCCATATTT
TTTGGTGAGAGAAATGGATTCAGCATGTCTAATGTTCCTGTAAATCGTGT
TGGCTTTTCAAGGAAGACTATAGAATGTAAGGAATCAAGAATAGGAAAAC
AGCCTATAGAAGTGCCATCCAATGTGACAATCACATTAGGAGGTCAAGAT
CTAAAAGTAAAGGGTCCACTGGGAGAACTTTCACTTGTTTATCCACGAGA
AGTGAAGGTTGATAGGGAGGACTCATTCCTGAGGGTCAGAAAGACTGTAG
AGACAAGAAGGGCCAATCAAATGCACGGGCTTTTCAGGACACTGACTGAC
AACATGGTGGTTGGAGTATCGAAAGGGTTTGAGAAGAAGCTTCAAATGGT
TGGTGTTGGATATCGTGCTGCATTAGAAGGACAAGTCTTGGTATTGAGTC
TTGGGTTCTCGCATCCAGTTAGGATGACAATCCCAGATGGCATANAAGTG
AATGTGGAGGAAAACACCAGGATCACTGTTAGTGGATACGATAAAAGCGC
AATTGGTCAGTTTGCTGCTTCCA
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