CX294839

Overview
NameCX294839
Unique NameCX294839
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length568
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig886 contig Ccv1_Contig886:1..565. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294839 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.931e-19
Identity = 57/154 (37.01%), Postives = 86/154 (55.84%), Query Frame = 1
Query:  127 SEPVLDIIGNKVKSTLEYKLIPVLDGAGGFSTHLG--TNGQCPLDVIQLSSPSERGDNLRLLPYDNYK-IVKVSTDVNLRFPVKVSVKPCNEEPLWKVDSYDDPL----IVTGGSEGHPGAETLLNWFKIEKAGNFSYGGVYNIVHCPSVCLSC 567
            + PVLD  G+++++ ++Y ++  + GAGG    LG  T   CP  V+Q  S  + G  +     D+   +V+VSTDVN+ F V +  + C+   +W++D+YD+      + T G +G PG  TL +WFKIEKAG       Y    CPSVC SC
Sbjct:   28 NSPVLDTDGDELQTGVQYYVLSSISGAGGGGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEF-VPIRDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVLG----YKFRFCPSVCDSC 176          
BLAST of CX294839 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 3.293e-19
Identity = 63/168 (37.50%), Postives = 91/168 (54.17%), Query Frame = 1
Query:  103 PLLGISSNS-EPVLDIIGNKVKSTLEYKLIPVLDGAGGFSTHLGT--NGQ--CPLDVIQLSSPSERGDNLRLLPYDNYK--IVKVSTDVNLRFPVKVSVKPCN--EEPLWKVDSYDDP----LIVTGGSEGHPGAETLLNWFKIEKAGNFSYGGVYNIVHCPSVCLSC 567
            PLL  + ++  PVLDI G K+++   Y ++PVL   GG  T   T  NG   CP  V+Q     +    L   P +N K  +V+VSTD+N+ F    +  PC      +W++D YD+      +  GG +G+PG ET+ +WFKIE+   F   G Y +V CP+VC SC
Sbjct:   24 PLLSAADSAPNPVLDIDGEKLRTGTNYYIVPVLRDHGGGLTVSATTPNGTFVCPPRVVQTRKEVDHDRPLAFFP-ENPKEDVVRVSTDLNINFS---AFMPCRWTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEE---FCGSGFYKLVFCPTVCGSC 184          
BLAST of CX294839 vs. ExPASy Swiss-Prot
Match: LSPI_CARPA (Latex serine proteinase inhibitor OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.651e-12
Identity = 50/150 (33.33%), Postives = 78/150 (52.00%), Query Frame = 1
Query:  130 EPVLDIIGNKVKSTLEYKLIPVLDGAGGFSTHL---GTNGQCPLDVIQLSSPSERGDNLRLLPYDNYK--IVKVSTDVNLRFPVKVSVKPCNEEPLWKVDSYDDPL---IVTGGSEGHPGAETLLNWFKIEKAG-NFSYGGVYNIVHCPS 552
            +P++DI G  V   ++Y ++  + GAGG    +   G   +CPL V+Q   P + G+ +      N K  IV  S D+N++F + ++   CNE   WKVD +   +   +  GG +G+ G E+  + FKI+KAG  FS    Y    CPS
Sbjct:    4 KPIVDIDGKPVLYGVDYFVVSAIWGAGGGGLTVYGPGNKKKCPLSVVQ--DPFDNGEPIIFSAIKNVKDNIVFESVDLNVKFNITIN---CNETTAWKVDRFPGVIGWTVTLGGEKGYHGFESTHSMFKIKKAGLPFS----YKFHFCPS 144          
The following BLAST results are available for this feature:
BLAST of CX294839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ASP_THECC1.931e-1937.0121 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU3.293e-1937.50Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
LSPI_CARPA6.651e-1233.33Latex serine proteinase inhibitor OS=Carica papaya... [more]
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Properties
Property NameValue
Genbank descriptionC05056E10SK PhIFruit1 Citrus clementina cDNA clone C05056E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294839 ID=CX294839; Name=CX294839; organism=Citrus clementina; type=EST; length=568bp
CTCGTGCCGAATTCGGCACGAGGCCAGCCTTCCAGTGGCAAAAAAATGAA
GACTTCATTGATAACAACACTCTCCTTCCTTATCCTTACCTTGGCCACGC
AGCCTCTATTGGGCATCTCATCAAACTCTGAACCTGTCTTAGATATCATT
GGCAACAAGGTCAAATCCACCCTCGAGTATAAACTTATCCCAGTCCTAGA
TGGCGCCGGTGGATTCAGCACACACCTAGGCACAAATGGACAGTGTCCCT
TGGACGTTATCCAATTAAGTTCTCCTAGCGAAAGGGGAGATAATTTAAGA
TTACTTCCGTACGACAATTACAAAATTGTCAAGGTATCCACTGATGTCAA
CCTGAGATTCCCCGTAAAAGTTTCTGTTAAGCCCTGTAATGAAGAACCAT
TGTGGAAAGTTGATAGCTATGACGATCCATTAATTGTAACCGGCGGAAGT
GAGGGCCACCCAGGAGCTGAAACGTTGCTAAATTGGTTTAAGATTGAGAA
AGCTGGAAATTTTTCATATGGTGGTGTATACAATATTGTCCATTGTCCGA
GTGTCTGTCTATCTTGTC
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