CX294859

Overview
NameCX294859
Unique NameCX294859
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length641
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9463 contig Ccv1_Contig9463:38..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294859 vs. ExPASy Swiss-Prot
Match: RPE_SPIOL (Ribulose-phosphate 3-epimerase, chloroplastic OS=Spinacia oleracea GN=RPE PE=1 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 7.235e-80
Identity = 153/189 (80.95%), Postives = 167/189 (88.36%), Query Frame = 2
Query:   86 MSTGSLCSST--TQINGFTGGFMLQKT--NLNQPSSLSFTRGRIHTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLKPATSLSAIECVL 640
            MS  SLC ST  +QINGF GG  ++K   + + P+SL+FTR ++ T+VKA++RVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE +STIHLHRT+NQIK LGAKAGVVL P T LS IE VL
Sbjct:    1 MSAASLCQSTLQSQINGFCGGLNIRKLQPSTSSPNSLTFTRRKVQTLVKATSRVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCELASTIHLHRTVNQIKSLGAKAGVVLNPGTPLSTIEYVL 189          
BLAST of CX294859 vs. ExPASy Swiss-Prot
Match: RPE_SOLTU (Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 2.327e-78
Identity = 147/184 (79.89%), Postives = 162/184 (88.04%), Query Frame = 2
Query:   89 STGSLCSSTTQINGFTGGFMLQKTNLNQPSSLSFTRGRIHTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLKPATSLSAIECVL 640
            S GS     +QI+GF G   LQK + + P+SL+FTR RI T+V AS+RVDKFSKSDIIVSPSILSANF+KLGEQVKA+E AGCDWIHVDVMDGRFVPNITIGPLVVD+LRP+TDLPLDVHLMIVEP+QRVPDFIKAGADIVSVHCEQSSTIHLHRT+NQIK LGAKAGVVL P T L+AIE VL
Sbjct:    1 SLGSSTLLQSQISGFGGSQKLQKISFSNPNSLTFTRRRIQTVVNASSRVDKFSKSDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVL 184          
BLAST of CX294859 vs. ExPASy Swiss-Prot
Match: RPE_ORYSJ (Ribulose-phosphate 3-epimerase, chloroplastic OS=Oryza sativa subsp. japonica GN=RPE PE=1 SV=2)

HSP 1 Score: 261.922 bits (668), Expect = 1.975e-69
Identity = 133/153 (86.93%), Postives = 143/153 (93.46%), Query Frame = 2
Query:  182 LSFTRGRIHTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLKPATSLSAIECVL 640
            L+F+  R    V+AS+RVDKFSK+DIIVSPSILSANF+KLGEQVKAVE+AGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRT+NQIK LGAKAGVVL PAT L+AI+ VL
Sbjct:   26 LAFSSPRKAFRVRASSRVDKFSKNDIIVSPSILSANFSKLGEQVKAVEVAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATPLTAIDYVL 178          
BLAST of CX294859 vs. ExPASy Swiss-Prot
Match: RPE_SYNY3 (Ribulose-phosphate 3-epimerase OS=Synechocystis sp. (strain PCC 6803) GN=rpe PE=1 SV=3)

HSP 1 Score: 184.496 bits (467), Expect = 4.007e-46
Identity = 89/129 (68.99%), Postives = 110/129 (85.27%), Query Frame = 2
Query:  254 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLKPATSLSAIECVL 640
            +I+V+PSILSA+F++LGE++KAV+ AG DWIHVDVMDGRFVPNITIGPL+VDA+RP+T   LDVHLMIVEPE+ V DF KAGADI+SVH E +++ HLHRTL QI++LG KAG VL P+T L  +E VL
Sbjct:    4 NIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVL 132          
BLAST of CX294859 vs. ExPASy Swiss-Prot
Match: RPE_BACSU (Ribulose-phosphate 3-epimerase OS=Bacillus subtilis GN=rpe PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.248e-39
Identity = 83/127 (65.35%), Postives = 99/127 (77.95%), Query Frame = 2
Query:  257 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLKPATSLSAIECV 637
            I V+PSILSA+FA LG ++K VE  G D IH+DVMDG FVPNITIGPL+V+A+RPVTDLPLDVHLMI EP++ +P F KAGADI+SVH E  +  HLHRT+  IK+ G KAGVVL P T +  IE V
Sbjct:    2 IKVAPSILSADFAALGNEIKDVEKGGADCIHIDVMDGHFVPNITIGPLIVEAVRPVTDLPLDVHLMIEEPDRYIPAFAKAGADILSVHAE--ACPHLHRTIQLIKEQGVKAGVVLNPHTPVQVIEHV 126          
BLAST of CX294859 vs. ExPASy Swiss-Prot
Match: RPEC_RALEH (Ribulose-phosphate 3-epimerase, chromosomal OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbEC PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.135e-31
Identity = 68/132 (51.52%), Postives = 94/132 (71.21%), Query Frame = 2
Query:  245 SKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLKPATSLSAIECVL 640
            S+  I ++PSILSA+FA+LGE+V A+E  G D +H DVMD  +VPN+TIGPLV +A+RP+  +P+DVHLM+   +  +P F KAGA+I+S H E S   H+ RT+  I+D G KAG+VL PAT L  ++  L
Sbjct:   12 SQRAIRLAPSILSADFARLGEEVCAIEAGGADLVHFDVMDNHYVPNLTIGPLVCEAIRPLVSIPIDVHLMVEPVDALIPLFAKAGANIISFHPEASR--HVDRTIGLIRDHGCKAGLVLNPATPLGWLDHTL 141          
BLAST of CX294859 vs. ExPASy Swiss-Prot
Match: RPEP_RALEH (Ribulose-phosphate 3-epimerase, plasmid OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbEP PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.111e-31
Identity = 67/132 (50.76%), Postives = 94/132 (71.21%), Query Frame = 2
Query:  245 SKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLKPATSLSAIECVL 640
            S+  I ++PSILSA+FA+LGE+V A+E  G D +H DVMD  +V N+TIGPLV +A+RP+  +P+DVHLM+   +  +P F KAGA+++S H E S   H+ RT+  I+D G KAG+VL PAT LS ++  L
Sbjct:   12 SQRAIRLAPSILSADFARLGEEVCAIEAGGADLVHFDVMDNHYVSNLTIGPLVCEAIRPLVSIPIDVHLMVEPVDALIPMFAKAGANLISFHPEASR--HVDRTIGLIRDHGCKAGLVLNPATPLSWLDHTL 141          
BLAST of CX294859 vs. ExPASy Swiss-Prot
Match: RPE_AQUAE (Ribulose-phosphate 3-epimerase OS=Aquifex aeolicus GN=rpe PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.171e-29
Identity = 64/124 (51.61%), Postives = 89/124 (71.77%), Query Frame = 2
Query:  260 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLKPATSLSAIE 631
            +++PSIL+ ++  +GEQ++A    G D +H DVMDG FVPNIT G  ++  +R    LP+D HLMI  P++ +P F++AGA+ +SVH E  +  H+HRTL  IK+LGAKAGVV+ P TSLSAIE
Sbjct:    3 LLAPSILAGDWWCIGEQIQATIRGGADILHYDVMDGHFVPNITAGYEILSHIRKRASLPIDAHLMIENPDKYIPKFVEAGANWISVHIE--NNYHIHRTLQLIKELGAKAGVVVNPGTSLSAIE 124          
BLAST of CX294859 vs. ExPASy Swiss-Prot
Match: RPE_BUCAP (Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rpe PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.592e-29
Identity = 64/127 (50.39%), Postives = 89/127 (70.08%), Query Frame = 2
Query:  263 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLKPATSLSAIECVL 640
            ++ SILSA+FA+LGE  K    AG DWIH DVMD  +VPN+T+GP+++ ALR     +P+DVHLM+   +  +P F +AGAD ++ H E  ST H+ RTLN IK+ G KAG+ L PATSL+ ++ V+
Sbjct:    6 LASSILSADFARLGEDTKKAIDAGSDWIHFDVMDNHYVPNLTMGPMILKALRNYNITVPIDVHLMVKPVDNLIPQFAEAGADFITFHPE--STDHIDRTLNLIKECGCKAGLALNPATSLNFLDYVM 130          
BLAST of CX294859 vs. ExPASy Swiss-Prot
Match: RPE_RHOCA (Ribulose-phosphate 3-epimerase OS=Rhodobacter capsulatus GN=cbbE PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 8.394e-28
Identity = 61/128 (47.66%), Postives = 82/128 (64.06%), Query Frame = 2
Query:  257 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLKPATSLSAIECVL 640
            I ++PSILSA+FA  G +++A+E  G DW+HVDVMDG FVPN+T GP  V A R      +DVHLMI   +  +  + +AGAD+++ H E     H+HRTL  I+  G K+GV + P T   AIE VL
Sbjct:    7 IKIAPSILSADFADFGREIQAIEAQGADWVHVDVMDGHFVPNLTFGPPAVAAFRKHVKTVMDVHLMISPVDAYIDAYAQAGADVLTAHVEAGP--HIHRTLQAIRAAGMKSGVAINPGTPAEAIEHVL 132          
The following BLAST results are available for this feature:
BLAST of CX294859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RPE_SPIOL7.235e-8080.95Ribulose-phosphate 3-epimerase, chloroplastic OS=S... [more]
RPE_SOLTU2.327e-7879.89Ribulose-phosphate 3-epimerase, chloroplastic (Fra... [more]
RPE_ORYSJ1.975e-6986.93Ribulose-phosphate 3-epimerase, chloroplastic OS=O... [more]
RPE_SYNY34.007e-4668.99Ribulose-phosphate 3-epimerase OS=Synechocystis sp... [more]
RPE_BACSU1.248e-3965.35Ribulose-phosphate 3-epimerase OS=Bacillus subtili... [more]
RPEC_RALEH2.135e-3151.52Ribulose-phosphate 3-epimerase, chromosomal OS=Ral... [more]
RPEP_RALEH8.111e-3150.76Ribulose-phosphate 3-epimerase, plasmid OS=Ralston... [more]
RPE_AQUAE1.171e-2951.61Ribulose-phosphate 3-epimerase OS=Aquifex aeolicus... [more]
RPE_BUCAP7.592e-2950.39Ribulose-phosphate 3-epimerase OS=Buchnera aphidic... [more]
RPE_RHOCA8.394e-2847.66Ribulose-phosphate 3-epimerase OS=Rhodobacter caps... [more]

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Properties
Property NameValue
Genbank descriptionC05056G08SK PhIFruit1 Citrus clementina cDNA clone C05056G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294859 ID=CX294859; Name=CX294859; organism=Citrus clementina; type=EST; length=641bp
GAAAACAGATACCATATTTCCTCTCACTAGCCATAACCAAACCAACAGTT
ACGTTTTAGAGAGAGAAACAAAAAAAAGCGTCAAGATGTCTACAGGCTCG
CTGTGTTCATCAACGACTCAGATCAATGGCTTTACAGGTGGTTTCATGTT
GCAGAAAACCAATCTTAATCAGCCCAGTTCACTTAGTTTTACAAGGGGGA
GAATTCATACTATAGTGAAGGCATCAGCTCGTGTGGATAAGTTCTCGAAA
AGTGATATTATTGTTTCTCCATCTATTCTCTCTGCTAATTTCGCGAAGTT
AGGCGAGCAGGTAAAAGCAGTGGAATTGGCTGGTTGTGATTGGATTCATG
TTGATGTCATGGATGGTCGTTTTGTTCCAAACATTACAATTGGACCTCTT
GTGGTTGATGCCTTGCGCCCTGTGACAGACCTTCCTTTGGATGTTCATTT
GATGATTGTCGAACCTGAACAACGAGTGCCTGATTTTATCAAGGCTGGAG
CAGACATAGTCAGCGTCCACTGTGAGCAATCATCCACCATTCATTTGCAC
CGCACTCTTAACCAAATAAAAGATTTGGGAGCTAAAGCTGGAGTTGTCCT
TAAACCTGCTACCTCACTGAGTGCAATAGAATGTGTCCTTG
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