CX294861

Overview
NameCX294861
Unique NameCX294861
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10715 contig Ccv1_Contig10715:140..827. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294861 vs. ExPASy Swiss-Prot
Match: FABG1_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic OS=Brassica napus GN=gbkr1 PE=1 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 3.547e-63
Identity = 122/178 (68.54%), Postives = 148/178 (83.15%), Query Frame = 2
Query:  119 GDRKIPQFRQWSPVQVKALPRPSVELKRRWNSSFASSGI-RAQVATIEQATNEAAQKVEAPVAVVTGASRGIGRAVAMSLGKAGCKVLVNYARSSKEAEEVCKEIEGSGGQALTFGGDVSKEADVESMIKTAVDAWGTVDILINNAXITRDTLLMRMKKVTWQDVIDLNLTGVFLCTQ 649
            G R+I Q RQWSP+Q  A+P   + L+     SFA+S + +AQ   +EQ+T EA  KVE+PV VVTGASRGIG+A+A+SLGKAGCKVLVNYARS+KEAEEV K+IE  GGQA+TFGGDVSKEADVE+M+KTA+DAWGT+D+++NNA ITRDTLL+RMKK  W +VIDLNLTGVFLCTQ
Sbjct:   20 GFREIRQVRQWSPLQ-SAMPHFGM-LRCGSRQSFATSTVVKAQATAVEQSTGEAVPKVESPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKEAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQ 195          

HSP 2 Score: 24.6386 bits (52), Expect = 3.547e-63
Identity = 8/18 (44.44%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  630 VYSCVHSSSQIMMKKKRG 683
            V+ C  ++++IMMKK++G
Sbjct:  190 VFLCTQAATKIMMKKRKG 207          
BLAST of CX294861 vs. ExPASy Swiss-Prot
Match: FABG_CUPLA (3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic OS=Cuphea lanceolata GN=CLKR27 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 6.570e-62
Identity = 118/145 (81.38%), Postives = 129/145 (88.97%), Query Frame = 2
Query:  215 SFASSGIRAQVATIEQATNEAAQKVEAPVAVVTGASRGIGRAVAMSLGKAGCKVLVNYARSSKEAEEVCKEIEGSGGQALTFGGDVSKEADVESMIKTAVDAWGTVDILINNAXITRDTLLMRMKKVTWQDVIDLNLTGVFLCTQ 649
            S A+SGIRAQVAT E+ +  A Q VE+PV +VTGASRGIG+A+A+SLGKAGCKVLVNYARSSKEAEEV KEIE  GGQALTFGGDVSKE DVE+MIKTAVDAWGTVDIL+NNA ITRD LLMRMKK  WQ+VIDLNLTGVFLCTQ
Sbjct:   51 SIATSGIRAQVATAEKVSAGAGQSVESPVVIVTGASRGIGKAIALSLGKAGCKVLVNYARSSKEAEEVSKEIEAFGGQALTFGGDVSKEEDVEAMIKTAVDAWGTVDILVNNAGITRDGLLMRMKKSQWQEVIDLNLTGVFLCTQ 195          

HSP 2 Score: 25.7942 bits (55), Expect = 6.570e-62
Identity = 9/18 (50.00%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  630 VYSCVHSSSQIMMKKKRG 683
            V+ C  ++++IMMKKK+G
Sbjct:  190 VFLCTQAAAKIMMKKKKG 207          
BLAST of CX294861 vs. ExPASy Swiss-Prot
Match: FABG3_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 3, chloroplastic OS=Brassica napus GN=bkr3 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 8.568e-62
Identity = 119/178 (66.85%), Postives = 145/178 (81.46%), Query Frame = 2
Query:  119 GDRKIPQFRQWSPVQVKALPRPSVELKRRWNSSFASSGI-RAQVATIEQATNEAAQKVEAPVAVVTGASRGIGRAVAMSLGKAGCKVLVNYARSSKEAEEVCKEIEGSGGQALTFGGDVSKEADVESMIKTAVDAWGTVDILINNAXITRDTLLMRMKKVTWQDVIDLNLTGVFLCTQ 649
            G R+I Q RQW+P+Q  ++P            SFA+S + +AQ   +EQ+T EA  KVE+PV VVTGASRGIG+A+A+SLGKAGCKVLVNYARS+KEAEEV K+IE  GGQA+TFGGDVSKEADVE+M+KTA+DAWGT+D+++NNA ITRDTLL+RMKK  W +VIDLNLTGVFLCTQ
Sbjct:   20 GFREIRQVRQWTPLQ-SSMPHFGSR------QSFATSTVVKAQATAVEQSTGEAVPKVESPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKEAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQ 190          

HSP 2 Score: 24.6386 bits (52), Expect = 8.568e-62
Identity = 8/18 (44.44%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  630 VYSCVHSSSQIMMKKKRG 683
            V+ C  ++++IMMKK++G
Sbjct:  185 VFLCTQAATKIMMKKRKG 202          
BLAST of CX294861 vs. ExPASy Swiss-Prot
Match: FABG5_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 5, chloroplastic (Fragment) OS=Brassica napus GN=bkr1 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 7.794e-60
Identity = 115/177 (64.97%), Postives = 139/177 (78.53%), Query Frame = 2
Query:  119 GDRKIPQFRQWSPVQVKALPRPSVELKRRWNSSFASSGIRAQVATIEQATNEAAQKVEAPVAVVTGASRGIGRAVAMSLGKAGCKVLVNYARSSKEAEEVCKEIEGSGGQALTFGGDVSKEADVESMIKTAVDAWGTVDILINNAXITRDTLLMRMKKVTWQDVIDLNLTGVFLCTQ 649
            G R+I Q RQW+P++      P   + R   S+   +  +AQ    EQ T EA  KVE+PV VVTGASRGIG+A+A+SLGKAGCKVLVNYARS+KEAEEV K+IE  GG+A+TFGGDVSKEADV+SM+KTAVD WGT+D+++NNA ITRDTLL+RMKK  W +VIDLNLTGVFLCTQ
Sbjct:   19 GYREICQVRQWAPLKSAM---PHFGMLRCATSTVVKAQAQAQATATEQTTEEAVPKVESPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKEAEEVSKQIEEYGGEAITFGGDVSKEADVDSMMKTAVDKWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQ 192          

HSP 2 Score: 24.6386 bits (52), Expect = 7.794e-60
Identity = 8/18 (44.44%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  630 VYSCVHSSSQIMMKKKRG 683
            V+ C  ++++IMMKK++G
Sbjct:  187 VFLCTQAATKIMMKKRKG 204          
BLAST of CX294861 vs. ExPASy Swiss-Prot
Match: FABG2_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 2, chloroplastic OS=Brassica napus GN=bkr2 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.204e-57
Identity = 118/185 (63.78%), Postives = 142/185 (76.76%), Query Frame = 2
Query:  119 GDRKIPQFRQWSPVQVKALPRPSVELKRRWNSS-FASSG-----IRAQVATIEQATNE--AAQKVEAPVAVVTGASRGIGRAVAMSLGKAGCKVLVNYARSSKEAEEVCKEIEGSGGQALTFGGDVSKEADVESMIKTAVDAWGTVDILINNAXITRDTLLMRMKKVTWQDVIDLNLTGVFLCTQ 649
            G R+I   RQW+PV     P P   + R  +   FA+S       +AQ    EQ+T E  A  KVE+PV VVTGASRGIG+A+A+SLGKAGCKVLVNYARS+KEAE+V K+IE  GGQA+TFGGDVSKEADV++M+KTAVDAWGT+D+++NNA ITRDTLL+RMKK  W +VIDLNLTGVFLCTQ
Sbjct:   22 GYREICHVRQWAPVHS---PMPHFGMLRCGSRRPFATSSSTVVQAQAQATAAEQSTGEEEAVPKVESPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKEAEQVSKQIEAYGGQAITFGGDVSKEADVDAMMKTAVDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQ 203          

HSP 2 Score: 24.6386 bits (52), Expect = 1.204e-57
Identity = 8/18 (44.44%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  630 VYSCVHSSSQIMMKKKRG 683
            V+ C  ++++IMMKK++G
Sbjct:  198 VFLCTQAATKIMMKKRKG 215          
BLAST of CX294861 vs. ExPASy Swiss-Prot
Match: FABG_ARATH (3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g24360 PE=2 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 2.668e-57
Identity = 109/177 (61.58%), Postives = 140/177 (79.10%), Query Frame = 2
Query:  119 GDRKIPQFRQWSPVQVKALPRPSVELKRRWNSSFASSGIRAQVATIEQATNEAAQKVEAPVAVVTGASRGIGRAVAMSLGKAGCKVLVNYARSSKEAEEVCKEIEGSGGQALTFGGDVSKEADVESMIKTAVDAWGTVDILINNAXITRDTLLMRMKKVTWQDVIDLNLTGVFLCTQ 649
            G R+I Q RQ +P+   A+P   + L+ R    F++S ++AQ    EQ+  E  QKVE+PV V+TGASRGIG+A+A++LGKAGCKVLVNYARS+KEAEEV K+IE  GGQA+TFGGDVSK  DV++M+KTA+D WGT+D+++NNA ITRDTLL+RMK+  W +VI LNLTGVFLCTQ
Sbjct:   20 GFREISQIRQLAPLH-SAIPHFGM-LRCRSRQPFSTSVVKAQATATEQSPGEVVQKVESPVVVITGASRGIGKAIALALGKAGCKVLVNYARSAKEAEEVAKQIEEYGGQAITFGGDVSKATDVDAMMKTALDKWGTIDVVVNNAGITRDTLLIRMKQSQWDEVIALNLTGVFLCTQ 194          

HSP 2 Score: 25.7942 bits (55), Expect = 2.668e-57
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 3
Query:  630 VYSCVHSSSQIMMKKKRG 683
            V+ C  ++ +IMMKKKRG
Sbjct:  189 VFLCTQAAVKIMMKKKRG 206          
BLAST of CX294861 vs. ExPASy Swiss-Prot
Match: FABG4_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 4 (Fragment) OS=Brassica napus GN=bkr4 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 3.071e-49
Identity = 94/126 (74.60%), Postives = 112/126 (88.89%), Query Frame = 2
Query:  272 EAAQKVEAPVAVVTGASRGIGRAVAMSLGKAGCKVLVNYARSSKEAEEVCKEIEGSGGQALTFGGDVSKEADVESMIKTAVDAWGTVDILINNAXITRDTLLMRMKKVTWQDVIDLNLTGVFLCTQ 649
            EA  KVE+PV VVTGASRGIG+A+A+SLGKAGCKVLVNYARS+KEAEEV K+IE  GGQA+TFGGDVSKEADV++M+KTAVD WGT+D+++NNA    DTLL+RMKK  W +V+DLNLTGVFLC+Q
Sbjct:    7 EAVPKVESPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKEAEEVSKQIEEYGGQAITFGGDVSKEADVDAMMKTAVDKWGTIDVVVNNAG---DTLLIRMKKSQWDEVMDLNLTGVFLCSQ 129          

HSP 2 Score: 23.8682 bits (50), Expect = 3.071e-49
Identity = 8/18 (44.44%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  630 VYSCVHSSSQIMMKKKRG 683
            V+ C  ++++IMMKK++G
Sbjct:  124 VFLCSQAATKIMMKKRKG 141          
BLAST of CX294861 vs. ExPASy Swiss-Prot
Match: FABG1_SYNY3 (3-oxoacyl-[acyl-carrier-protein] reductase 1 OS=Synechocystis sp. (strain PCC 6803) GN=fabG1 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.441e-31
Identity = 67/119 (56.30%), Postives = 89/119 (74.79%), Query Frame = 2
Query:  293 APVAVVTGASRGIGRAVAMSLGKAGCKVLVNYARSSKEAEEVCKEIEGSGGQALTFGGDVSKEADVESMIKTAVDAWGTVDILINNAXITRDTLLMRMKKVTWQDVIDLNLTGVFLCTQ 649
            A VA+VTGASRGIG+A A++L   G KV+VNYA+SS  A+ V  EI  +GG+A+    +V+   +V+ +IKT +D +  +D+L+NNA ITRDTLL+RMK   WQ VIDLNLTGVFLCT+
Sbjct:    6 AQVALVTGASRGIGKATALALAATGMKVVVNYAQSSTAADAVVAEIIANGGEAIAVQANVANADEVDQLIKTTLDKFSRIDVLVNNAGITRDTLLLRMKLEDWQAVIDLNLTGVFLCTK 124          
BLAST of CX294861 vs. ExPASy Swiss-Prot
Match: FABG_BACSU (3-oxoacyl-[acyl-carrier-protein] reductase OS=Bacillus subtilis GN=fabG PE=3 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 5.090e-29
Identity = 61/116 (52.59%), Postives = 84/116 (72.41%), Query Frame = 2
Query:  302 AVVTGASRGIGRAVAMSLGKAGCKVLVNYARSSKEAEEVCKEIEGSGGQALTFGGDVSKEADVESMIKTAVDAWGTVDILINNAXITRDTLLMRMKKVTWQDVIDLNLTGVFLCTQ 649
            A+VTGASRGIGR++A+ L K+G  V+VNY+ +  +A EV  EI+  G +A+    DVS   DV++MIK  +  + T+DIL+NNA ITRD L+MRMK+  W DVI++NL GVF CT+
Sbjct:    7 AIVTGASRGIGRSIALDLAKSGANVVVNYSGNEAKANEVVDEIKSMGRKAIAVKADVSNPEDVQNMIKETLSVFSTIDILVNNAGITRDNLIMRMKEDEWDDVININLKGVFNCTK 122          
BLAST of CX294861 vs. ExPASy Swiss-Prot
Match: FABG_STAES (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=fabG PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.139e-27
Identity = 61/117 (52.14%), Postives = 82/117 (70.09%), Query Frame = 2
Query:  302 AVVTGASRGIGRAVAMSLGKAGCKVLVNYARSSKEAEEVCKEIEGSGGQALTFGGDVSKEADVESMIKTAVDAWGTVDILINNAXITRDTLLMRMKKVTWQDVIDLNLTGVFLCTQQ 652
            A+VTGASRGIGR++A+ L + G  V VNYA S  +AE V +EI+  G ++     +V+K  +V+ MIK  V  +G+VD+L+NNA IT+D LLMRMK+  W DVID NL GVF C Q+
Sbjct:    5 ALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKDKAEAVVEEIKAKGVESFAIQANVAKGDEVKEMIKEVVSQFGSVDVLVNNAGITKDNLLMRMKEQEWDDVIDTNLKGVFNCIQK 121          
The following BLAST results are available for this feature:
BLAST of CX294861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
FABG1_BRANA3.547e-6368.543-oxoacyl-[acyl-carrier-protein] reductase 1, chlo... [more]
FABG_CUPLA6.570e-6281.383-oxoacyl-[acyl-carrier-protein] reductase, chloro... [more]
FABG3_BRANA8.568e-6266.853-oxoacyl-[acyl-carrier-protein] reductase 3, chlo... [more]
FABG5_BRANA7.794e-6064.973-oxoacyl-[acyl-carrier-protein] reductase 5, chlo... [more]
FABG2_BRANA1.204e-5763.783-oxoacyl-[acyl-carrier-protein] reductase 2, chlo... [more]
FABG_ARATH2.668e-5761.583-oxoacyl-[acyl-carrier-protein] reductase, chloro... [more]
FABG4_BRANA3.071e-4974.603-oxoacyl-[acyl-carrier-protein] reductase 4 (Frag... [more]
FABG1_SYNY32.441e-3156.303-oxoacyl-[acyl-carrier-protein] reductase 1 OS=Sy... [more]
FABG_BACSU5.090e-2952.593-oxoacyl-[acyl-carrier-protein] reductase OS=Baci... [more]
FABG_STAES2.139e-2752.143-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]

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Properties
Property NameValue
Genbank descriptionC05056G10SK PhIFruit1 Citrus clementina cDNA clone C05056G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294861 ID=CX294861; Name=CX294861; organism=Citrus clementina; type=EST; length=688bp
TTCATTTCTGGCTACCCTCTTGTCTTGGATTATTTCGTTTCGCGGAAAAC
CTCTCATGGCTGCCGTCGCCGGATCCAACATTGTCGCGTTCAAATCGGCG
GCTGCTTCCGCGAAATTCGGCGATCGAAAAATCCCGCAGTTTCGTCAATG
GTCTCCTGTTCAGGTTAAGGCTCTGCCTCGCCCTTCCGTTGAGCTCAAGC
GTAGATGGAACAGCTCCTTCGCTTCTTCTGGAATCAGAGCTCAGGTTGCC
ACCATAGAACAAGCAACCAATGAAGCAGCACAAAAGGTGGAAGCTCCTGT
GGCTGTGGTGACTGGTGCCTCTAGGGGTATTGGCAGAGCAGTAGCGATGT
CCTTGGGAAAAGCAGGTTGCAAGGTCCTGGTAAATTATGCTAGGTCATCA
AAGGAAGCCGAAGAAGTTTGCAAAGAGATTGAGGGGTCTGGCGGTCAGGC
TCTTACTTTTGGTGGAGATGTTTCCAAAGAAGCTGATGTGGAATCAATGA
TCAAAACTGCTGTCGATGCTTGGGGAACCGTTGATATATTGATTAACAAT
GCANGAATCACTAGAGATACATTGCTCATGAGAATGAAGAAAGTCACATG
GCAGGACGTTATTGATCTGAATCTTACAGGTGTATTCCTGTGTACACAGC
AGCAGCCAAATCATGATGAAGAAGAAAAGGGGAGATAT
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