CX294873

Overview
NameCX294873
Unique NameCX294873
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294873_ssr108 microsatellite CX294873_ssr108:108..125. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig590 contig Ccv1_Contig590:1..625. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX294873 vs. ExPASy Swiss-Prot
Match: Y1839_ARATH (Probable serine/threonine-protein kinase At1g18390 OS=Arabidopsis thaliana GN=At1g18390 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 4.473e-31
Identity = 77/169 (45.56%), Postives = 102/169 (60.36%), Query Frame = 3 
Query:  132 ASHTLSLDSKFEACAPRTCGNDLIISYPFWISAEQEPFCGYPNFGITCND--KNPVLTISHYDYIIKDIFYPNTSLLVANSLVYEESCQTPLQNLTLDRTPFNFS-SNTDLFIWYNCTEN-PPQYDTYPINCYSNAT-LHSFAGFHKDVL-VEANYSFESCQSFAYAPV 620
            A+ TLSLD KF+AC P++CG    ISYPF++S +QE FCGYP+F +TC+D  K PVL IS  +Y+IK+I Y   S  V NS    + C  PL NLTL RTPF  + S+ +  I YNC+++    + TYP+ C  N + L SF  F +  L  E   +  SCQ     PV
Sbjct:   21 ATQTLSLDPKFKACEPKSCGKGPQISYPFYLSGKQESFCGYPSFELTCDDEEKLPVLGISGEEYVIKNISYLTQSFQVVNSKASHDPCPRPLNNLTLHRTPFFVNPSHINFTILYNCSDHLLEDFRTYPLTCARNTSLLRSFGVFDRKKLGKEKQIASMSCQKLVDVPV 189
The following BLAST results are available for this feature:
BLAST of CX294873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1839_ARATH4.473e-3145.56Probable serine/threonine-protein kinase At1g18390... [more]
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Properties
Property NameValue
Genbank descriptionC05056H10SK PhIFruit1 Citrus clementina cDNA clone C05056H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294873 ID=CX294873; Name=CX294873; organism=Citrus clementina; type=EST; length=625bp
TATGCTTCTCTCCATTTGCTTACGCTACTTCTCTTCTTCCCTTCATTTTC
CAAATCCGTATGGATCTCCAAAACATCTTCACATTCAAAACAACTCTTCT
TCGAAGTATCATCATCATCATCATCACTTTTGCCAGCCACACCCTTTCTC
TTGACTCCAAATTCGAGGCTTGTGCCCCAAGAACATGCGGCAACGACCTC
ATAATAAGCTACCCTTTTTGGATTTCTGCAGAACAAGAACCCTTCTGTGG
CTATCCAAACTTTGGGATCACCTGTAATGACAAAAACCCTGTACTTACCA
TTTCTCATTATGATTACATCATTAAAGATATCTTCTATCCTAACACTTCA
CTTCTTGTGGCCAATTCTTTGGTCTATGAAGAATCATGTCAAACTCCTCT
TCAGAATCTTACTCTTGACCGAACTCCTTTCAATTTTAGTAGTAATACAG
ATCTTTTTATCTGGTACAACTGCACTGAGAATCCTCCTCAGTACGATACG
TATCCTATAAATTGTTATAGTAATGCTACACTCCATTCTTTTGCCGGTTT
TCACAAGGATGTGTTGGTGGAGGCAAACTATTCATTCGAGTCGTGCCAGT
CTTTTGCGTACGCACCTGTGCATCT
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