CX294889

Overview
NameCX294889
Unique NameCX294889
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length372
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294889 vs. ExPASy Swiss-Prot
Match: U2A2B_ARATH (Splicing factor U2af large subunit B OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.008e-12
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 3
Query:   27 TPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDY 173
            TPGVGKVFLEY D  G + A++ ++GRKFGGN V A YYPEDKY   DY
Sbjct:  539 TPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKYAQGDY 587          
BLAST of CX294889 vs. ExPASy Swiss-Prot
Match: U2A2A_NICPL (Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia GN=U2AF65A PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.673e-11
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 3
Query:   27 TPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDYSA 179
            TPG+GKVFLEY D  G + A+  L+GRKFGGN V A +YPE+K+   DY A
Sbjct:  505 TPGLGKVFLEYADVDGSSKARQGLNGRKFGGNQVVAVFYPENKFSEGDYEA 555          
BLAST of CX294889 vs. ExPASy Swiss-Prot
Match: U2A2B_NICPL (Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.409e-11
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 3
Query:   27 TPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDY 173
            TPGVGKVFLEY D    + A+ +L+GRKFGGN V A +YPE+K++  DY
Sbjct:  523 TPGVGKVFLEYADVDSSSKARQSLNGRKFGGNQVVAVFYPENKFYEGDY 571          
The following BLAST results are available for this feature:
BLAST of CX294889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
U2A2B_ARATH3.008e-1265.31Splicing factor U2af large subunit B OS=Arabidopsi... [more]
U2A2A_NICPL5.673e-1158.82Splicing factor U2af large subunit A OS=Nicotiana ... [more]
U2A2B_NICPL7.409e-1159.18Splicing factor U2af large subunit B OS=Nicotiana ... [more]
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Properties
Property NameValue
Genbank descriptionC05057B06SK PhIFruit1 Citrus clementina cDNA clone C05057B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294889 ID=CX294889; Name=CX294889; organism=Citrus clementina; type=EST; length=372bp
CTCGTGCCGAATTCGGCACGAGGGAGACGCCTGGAGTTGGAAAGGTGTTC
TTGGAGTATTATGACGCTGTTGGTTGTGCCACTGCAAAAAACGCCCTAAG
TGGCAGGAAATTTGGAGGCAATACGGTGAATGCCTTCTATTACCCAGAAG
ACAAATACTTCAACAAAGACTATAGTGCCTGAAGTAGGCTTCCCCGCGCC
GGCCCCCCCTCCCAAAAAAAAATTATTTTTATAATAAAAGTTTACAATGT
ATAGTTTTCAGTCAGTTGTGTAACATGAAATGATTTACCTAATAATTATT
TTTATAGGTGCTTTTAAGTCAATTGGATCGCATTCGATTGTATATGAATG
CCATTTTCCCAAAAAAAAAAAA
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