CX294896

Overview
NameCX294896
Unique NameCX294896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig592 contig Ccv1_Contig592:1..457. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294896 vs. ExPASy Swiss-Prot
Match: PTRB_MORLA (Protease 2 OS=Moraxella lacunata GN=ptrB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.457e-11
Identity = 31/55 (56.36%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    1 EPAKFVAKLREMKTDDNILLFKCELGAGHFSKSGRFERLREAAFTYTFLMRALSM 165
            EPAK+VA+LR +KTD+N L+ K  +GAGHF KSGRF  L+EAA +Y F++  L +
Sbjct:  626 EPAKWVARLRAVKTDNNTLVMKTNMGAGHFGKSGRFNHLKEAAESYAFILDKLGV 680          
The following BLAST results are available for this feature:
BLAST of CX294896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PTRB_MORLA1.457e-1156.36Protease 2 OS=Moraxella lacunata GN=ptrB PE=3 SV=1[more]
back to top
Properties
Property NameValue
Genbank descriptionC05057C01SK PhIFruit1 Citrus clementina cDNA clone C05057C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294896 ID=CX294896; Name=CX294896; organism=Citrus clementina; type=EST; length=457bp
GAACCTGCTAAGTTTGTGGCAAAACTGAGGGAAATGAAAACTGATGACAA
TATACTATTGTTTAAATGTGAACTTGGTGCTGGACATTTTTCAAAGTCAG
GGAGATTTGAGAGGCTTCGAGAAGCTGCTTTTACATATACTTTTCTGATG
AGGGCCCTGAGTATGCTTCCCAGTGTTGGCTCTGAGCAGAGCTGAGGAAC
CAAATGCCCATTAGGAGATGCTTCACGCGGTACGAATGCCTGTTGCGCAA
GATCAGCAACACGGCTTACAGTTGAGCCATTTCTGGTGATACAAATATTA
CTCCTGATTTATTTCTTGGACTCTTCCCCGCCAAAAAAAAAAAAATTAGG
TAGTGCTTGGAATTTTGAACTCTTGATAGTGACCATTTGGAATTGTTTTT
CATTACAATTTACTCAATAATTTTCTTGTCTTTTAGAAAAAAAAAAAAAA
AAAAAAA
back to top