CX294897

Overview
NameCX294897
Unique NameCX294897
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length592
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13924 contig Ccv1_Contig13924:955..1546. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX294897 vs. ExPASy Swiss-Prot
Match: SPE1_PEA (Arginine decarboxylase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.834e-15
Identity = 45/106 (42.45%), Postives = 54/106 (50.94%), Query Frame = 2 
Query:    2 VMQHEPELMFETLKHRAEEYCGQEHXXXXXXXXXXXXXXXMXXXXXXXXXXXQYFHSMPYLVVPSSCSLTAINNGGGLYYCNGEDCD----PVVDSSPNEDEQWSY 307
            VMQHEP+LMFETLKHRA E+CGQ                 +           Q F +MPYLV  ++C L A+ N  G YYC+G+D       V  S   EDE WSY
Sbjct:  635 VMQHEPQLMFETLKHRALEFCGQH------------DDDSVVNAGVLANSLAQSFDNMPYLVSSTTCCLNALTNNNGFYYCSGDDFSADTVSVATSVAGEDENWSY 728
The following BLAST results are available for this feature:
BLAST of CX294897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SPE1_PEA1.834e-1542.45Arginine decarboxylase OS=Pisum sativum PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC05057C02SK PhIFruit1 Citrus clementina cDNA clone C05057C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294897 ID=CX294897; Name=CX294897; organism=Citrus clementina; type=EST; length=592bp
GGTGATGCAGCACGAGCCCGAGCTCATGTTTGAGACCCTCAAACACCGTG
CTGAGGAATATTGTGGACAGGAGCATGGTAGTAATGGTGGGGATGGTGAT
ACTGATGATTACGATCACGGCATGGCTAATAATTCTGCTTTAGCTAGCAG
CCTTGCTCAGTACTTTCACAGCATGCCATATCTTGTGGTGCCATCCTCTT
GTTCTTTGACTGCTATCAATAATGGTGGTGGGTTATACTATTGCAACGGG
GAGGATTGCGATCCTGTTGTTGATTCTTCTCCAAATGAGGATGAGCAGTG
GTCATACTGCTATGCTTAGATGTGTATTCTTAGTATCACCTGTCACCCTA
TCGAAATGCTTCATCTAATCCTTGAGCTTGTCTTGTTGCAAGTTTTTATT
CCGTAATTTTAATTTCATTGTCTATTTTAATTTTTAGATTTTCATTGCAA
AAGATGGAAGCAGTTGAACATTGTCTTTTGCAATTTTAGTGATGAAGAGG
AGTGATGGGTACTGAATCCACCCTTTTGTAAATTCGGGATCTCATGGCCT
CTTTTTATGTCAACATTAGTAGACTTCAATCAGAGCTTTTAG
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