CX294898

Overview
NameCX294898
Unique NameCX294898
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig593 contig Ccv1_Contig593:1..596. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_PARUW (Tyrosyl-tRNA synthetase OS=Protochlamydia amoebophila (strain UWE25) GN=tyrS PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.984e-26
Identity = 58/122 (47.54%), Postives = 82/122 (67.21%), Query Frame = 1
Query:  235 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIFG----SSNVVILN 588
            NV+D L  RG ++++TS+ +R L +   + +KVYCGFDPTA+SLHLGNL+ I+ L+WF R GH  VA++GGAT  +GDPSGK+ ER  LD   ++ N+ GI K    I      ++  +ILN
Sbjct:    3 NVMDVLRERGFIDAVTSEEIRQLTN---QPIKVYCGFDPTADSLHLGNLVAIMGLAWFQRFGHTPVAIVGGATGMIGDPSGKNAERQLLDEKKIQLNLKGISKNLEAILDFNHPTAPAIILN 121          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYYM_DICDI (Probable tyrosyl-tRNA synthetase, mitochondrial OS=Dictyostelium discoideum GN=mtyrS PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.955e-21
Identity = 52/141 (36.88%), Postives = 83/141 (58.87%), Query Frame = 1
Query:  211 TQTHGRHPNVVDTLERRGLLESITSDNLRSLA--------------SSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIFGSSNVVILNI 591
            T T     NV++ L++RG +  +T+ ++  +               ++N   + +Y GFDPTA+SLH+GNLL ++V+  F R GH  +AL+GGATA +GDPSGKS +R  L  + +E N+  IR+  + + G   +V+ NI
Sbjct:   30 TITKNDKNNVINILKKRGFIHQMTASDIEMIKMTSTNNNNNNDNNNNNNNNKVSLYAGFDPTADSLHIGNLLTLMVMLHFKRHGHNPIALMGGATALIGDPSGKSSDRVMLTEEFIEGNLKHIRENITAVLGEDTLVVNNI 170          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYYM_YEAST (Tyrosyl-tRNA synthetase, mitochondrial OS=Saccharomyces cerevisiae GN=MSY1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.466e-20
Identity = 54/140 (38.57%), Postives = 83/140 (59.29%), Query Frame = 1
Query:  148 IKNSAFFSSISCVQQLQSDPQTQTHGRHPNVVDTLERRGLLESITSDN--LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF 561
            +  S F+S  S ++      Q  +  R  N++D L++RGL+  ++     LR+  + N+K +K+YCG DPTA+SLHLGNL+ ++VL  F   GH  V +IGGAT +VGDPSG+  ER  ++ D  + N+  I +     F
Sbjct:   31 LPKSRFYSQPSALEV-----QGTSDSRSDNILDELKQRGLVSQVSQPESFLRTKLNGNDK-IKLYCGVDPTAQSLHLGNLVPLMVLLHFYVKGHDIVTVIGGATGKVGDPSGRKTERDVMENDIRQSNVASISQQLQRFF 164          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_LACF3 (Tyrosyl-tRNA synthetase OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=tyrS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.046e-19
Identity = 48/119 (40.34%), Postives = 71/119 (59.66%), Query Frame = 1
Query:  235 NVVDTLERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIFGSSNVVILN 588
            N++D L+ RG L   T +  LR L  + EK + +YCG DP+ +SLH+G+L+  ++L  F   GH+ V LIGG T  +GDPSG+  ER       LE+N+  + K    +FG+ N  I+N
Sbjct:    2 NIIDELKWRGALNQATDEEGLREL--TEEKKIALYCGTDPSGDSLHIGHLIPFMMLKRFQLAGHKPVILIGGGTGAIGDPSGRKTERDLETRSKLEQNVQSLTKQMIRLFGTENFTIVN 118          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_RHOBA (Tyrosyl-tRNA synthetase OS=Rhodopirellula baltica GN=tyrS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.051e-18
Identity = 47/102 (46.08%), Postives = 68/102 (66.67%), Query Frame = 1
Query:  235 NVVDTLERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGI 537
            ++++ L  RGLL   T +N +  L +S  +T  +Y GFDPTA SLH+G ++ +++L  F R GH  +AL+GGAT  +GDPSGKS ER  L  D L+KN+ G+
Sbjct:   15 SLIEDLRWRGLLNQTTDENGIAELLNSGPQT--IYIGFDPTATSLHVGGMMQLMMLRRFQRAGHNPIALVGGATGMIGDPSGKSEERNLLSADQLQKNVDGV 114          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_BACFR (Tyrosyl-tRNA synthetase OS=Bacteroides fragilis GN=tyrS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.792e-18
Identity = 48/103 (46.60%), Postives = 66/103 (64.08%), Query Frame = 1
Query:  235 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRK 543
            N V+ L  RG++  +       LA   ++ +  Y G DPTA+SLH+G+L G+++L  F RCGH+ +ALIGGAT  +GDPSGKS ER  LD +TL  N   I+K
Sbjct:    2 NFVEELRWRGMVHDMMPGTEELLA---KEQVTAYVGIDPTADSLHIGHLCGVMILRHFQRCGHKPLALIGGATGMIGDPSGKSAERNLLDEETLRHNQACIKK 101          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_BACFN (Tyrosyl-tRNA synthetase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=tyrS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.792e-18
Identity = 48/103 (46.60%), Postives = 66/103 (64.08%), Query Frame = 1
Query:  235 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRK 543
            N V+ L  RG++  +       LA   ++ +  Y G DPTA+SLH+G+L G+++L  F RCGH+ +ALIGGAT  +GDPSGKS ER  LD +TL  N   I+K
Sbjct:    2 NFVEELRWRGMVHDMMPGTEELLA---KEQVTAYVGIDPTADSLHIGHLCGVMILRHFQRCGHKPLALIGGATGMIGDPSGKSAERNLLDEETLRHNQACIKK 101          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_BACTN (Tyrosyl-tRNA synthetase OS=Bacteroides thetaiotaomicron GN=tyrS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.341e-18
Identity = 48/103 (46.60%), Postives = 66/103 (64.08%), Query Frame = 1
Query:  235 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRK 543
            N V+ L  RG+L+ I       L   N++ +  Y G DPTA+SLH+G+L G+++L    RCGH+ +ALIGGAT  +GDPSGKS ER  L+ +TL  N   I+K
Sbjct:    2 NFVEELRWRGMLQDIMPGTEELL---NKEQVTAYLGIDPTADSLHIGHLCGVMILRHLQRCGHKPLALIGGATGMIGDPSGKSAERNLLNEETLRHNQACIKK 101          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_DESOH (Tyrosyl-tRNA synthetase OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=tyrS PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.057e-18
Identity = 52/121 (42.98%), Postives = 75/121 (61.98%), Query Frame = 1
Query:  235 NVVDTLERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTI--FGSSNVVILN 588
            +VVD L  RG +E+ T +  LR LA+  E  +  Y GFDPTA SLH+G+L+ I+ L+   R GH+ +AL+GG T  VGDPSGK+  R  +  +T+E NI GI++  S    F     +++N
Sbjct:    2 SVVDILSERGFVEAFTHEQELRDLAA--ESAVTCYIGFDPTASSLHVGSLVPIMALAHMQRNGHRPIALVGGGTGLVGDPSGKTEMRQLITPETVEANIEGIQRQLSRFIDFDGGKALLVN 120          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_FLAPJ (Tyrosyl-tRNA synthetase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=tyrS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.215e-18
Identity = 50/115 (43.48%), Postives = 71/115 (61.74%), Query Frame = 1
Query:  235 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTI--FGSSN 573
            N+V+ L+ RGL   +       L    +++   Y GFDPTA+SLH+G+++ II+L      GH+ +ALIGGAT  +GDPSGKS ER  LD  TL KN+ GI+   S+   F ++N
Sbjct:    3 NLVEELKWRGLFHDMMPGTEEQLT---KESTTAYIGFDPTADSLHIGSMVQIILLVHLKNFGHKPIALIGGATGMIGDPSGKSDERNLLDEATLNKNVAGIKAVLSSFLDFNTTN 114          
The following BLAST results are available for this feature:
BLAST of CX294898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
SYY_PARUW3.984e-2647.54Tyrosyl-tRNA synthetase OS=Protochlamydia amoeboph... [more]
SYYM_DICDI2.955e-2136.88Probable tyrosyl-tRNA synthetase, mitochondrial OS... [more]
SYYM_YEAST1.466e-2038.57Tyrosyl-tRNA synthetase, mitochondrial OS=Saccharo... [more]
SYY_LACF38.046e-1940.34Tyrosyl-tRNA synthetase OS=Lactobacillus fermentum... [more]
SYY_RHOBA1.051e-1846.08Tyrosyl-tRNA synthetase OS=Rhodopirellula baltica ... [more]
SYY_BACFR1.792e-1846.60Tyrosyl-tRNA synthetase OS=Bacteroides fragilis GN... [more]
SYY_BACFN1.792e-1846.60Tyrosyl-tRNA synthetase OS=Bacteroides fragilis (s... [more]
SYY_BACTN2.341e-1846.60Tyrosyl-tRNA synthetase OS=Bacteroides thetaiotaom... [more]
SYY_DESOH3.057e-1842.98Tyrosyl-tRNA synthetase OS=Desulfococcus oleovoran... [more]
SYY_FLAPJ5.215e-1843.48Tyrosyl-tRNA synthetase OS=Flavobacterium psychrop... [more]

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Properties
Property NameValue
Genbank descriptionC05057C04SK PhIFruit1 Citrus clementina cDNA clone C05057C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294898 ID=CX294898; Name=CX294898; organism=Citrus clementina; type=EST; length=596bp
AGCAAGTGCTGCTGACATCAAACGCAAATGGCAGCCGCAGCCGCTGCCGC
TGCGTCGAGAACTCTCCTCTGCTCCCACCAAAAACTCATAACCTCATCCA
TTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCACCGCATT
AAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCAACAACTCCAATC
CGACCCACAGACACAAACCCACGGCCGTCACCCGAATGTCGTCGACACTC
TCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCTCA
CTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGACCC
AACTGCCGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCTGT
CTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCGCC
ACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAACT
CGACATTGATACGTTAGAAAAGAACATTCTTGGAATTCGTAAGACTTTTT
CAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATATTATGAT
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