CX294900

Overview
NameCX294900
Unique NameCX294900
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length611
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294900 vs. ExPASy Swiss-Prot
Match: DPOE1_MOUSE (DNA polymerase epsilon catalytic subunit A OS=Mus musculus GN=Pole PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 7.203e-18
Identity = 46/143 (32.17%), Postives = 68/143 (47.55%), Query Frame = 3
Query:    3 DPCPSFILPNVICSYCNXXXXXXXXXXXXXXXQ-----DWHCAMPQCGQPYDREVMENALLQIVRQRERLYHLQDLVCIRCNQVKAAHLAEQCACAGSFRCKEDASDFRSKMQIFLNIANRQGFQLLQECTSWILEVQ*PLTC 416
            DPC S++LP VIC  CN                      W C+   C  PYD   +E+AL++ ++++   + LQDLVC++C  +K  H+   C+CAG F        F  +++IF NIA       LQE   W+L+      C
Sbjct: 2143 DPCHSYVLPEVICHSCNFCRDLDLCKDSSFSQDGAILPQWLCS--NCQAPYDSSAIESALVEALQRKLMAFTLQDLVCLKCRGMKETHMPVYCSCAGDFTLTIRTEVFMEQIRIFQNIAKYYSMSYLQETIEWLLQTSPVSNC 2283          
BLAST of CX294900 vs. ExPASy Swiss-Prot
Match: DPOE1_HUMAN (DNA polymerase epsilon catalytic subunit A OS=Homo sapiens GN=POLE PE=1 SV=5)

HSP 1 Score: 86.2705 bits (212), Expect = 1.358e-16
Identity = 44/136 (32.35%), Postives = 64/136 (47.06%), Query Frame = 3
Query:    3 DPCPSFILPNVICSYCNXXXXXXXXXXXXXXXQ-----DWHCAMPQCGQPYDREVMENALLQIVRQRERLYHLQDLVCIRCNQVKAAHLAEQCACAGSFRCKEDASDFRSKMQIFLNIANRQGFQLLQECTSWILE 395
            DPC S++LP VIC  CN                      W C+   C  PYD   +E  L+++++++   + LQDLVC++C  VK   +   C+CAG F        F  ++ IF NIA   G   L E   W+L+
Sbjct: 2146 DPCRSYVLPEVICRSCNFCRDLDLCKDSSFSEDGAVLPQWLCS--NCQAPYDSSAIEMTLVEVLQKKLMAFTLQDLVCLKCRGVKETSMPVYCSCAGDFALTIHTQVFMEQIGIFRNIAQHYGMSYLLETLEWLLQ 2279          
The following BLAST results are available for this feature:
BLAST of CX294900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DPOE1_MOUSE7.203e-1832.17DNA polymerase epsilon catalytic subunit A OS=Mus ... [more]
DPOE1_HUMAN1.358e-1632.35DNA polymerase epsilon catalytic subunit A OS=Homo... [more]
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Properties
Property NameValue
Genbank descriptionC05057C06SK PhIFruit1 Citrus clementina cDNA clone C05057C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294900 ID=CX294900; Name=CX294900; organism=Citrus clementina; type=EST; length=611bp
GTGATCCCTGCCCTTCTTTTATCTTACCGAACGTCATTTGCAGCTACTGC
AATGACTGTCGAGACTTGGACTTGTGCCGTGACATGGCTTTACTGGCTCA
GGATTGGCATTGTGCCATGCCACAGTGTGGCCAGCCTTATGACCGTGAGG
TGATGGAGAATGCTCTTCTTCAAATTGTTCGTCAGAGAGAGCGGCTCTAC
CATCTACAGGATCTGGTATGCATTAGGTGCAACCAGGTGAAAGCTGCTCA
TTTAGCTGAACAATGTGCGTGTGCTGGTTCATTTAGGTGCAAGGAAGACG
CGTCTGATTTCCGCAGCAAAATGCAGATTTTCTTAAACATAGCTAATCGA
CAGGGGTTTCAACTCCTCCAGGAATGTACCTCATGGATTTTAGAAGTTCA
GTAGCCGTTGACCTGTGGCTCTTCACATTCATAAATCTGACAATGTTACA
CTTTCCTGACTAATTTCAACCCTGCTGTCTTGAGCTCCAGCACTGTACAT
AACGGTAAGAACGTAACACCAAACAGATTTAGATGGAGAATGATGANCAG
CATTCAGAGAAGGGGGCAAATTCAGGGAGGTGGTTAAAGAAAAAATCACA
GTTGAATGTTA
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