CX294904

Overview
NameCX294904
Unique NameCX294904
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294904_ssr101 microsatellite CX294904_ssr101:101..112. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX294904 vs. ExPASy Swiss-Prot
Match: Y3209_ORYSJ (B3 domain-containing protein Os03g0120900 OS=Oryza sativa subsp. japonica GN=Os03g0120900 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.253e-48
Identity = 91/116 (78.45%), Postives = 101/116 (87.07%), Query Frame = 1
Query:  226 IMQETKDIIGEGEAEED--RVLISLEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSF 567
            I++      G GE +E   R L ++EKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLD++SNEKGLLL+FEDR GKPWRFRYSYWNSSQSYVMTKGWSRFVK+K+LDAGD VSF
Sbjct:    7 IVRPASAAAGGGEVQESGGRSLAAVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDAASNEKGLLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSF 122          

HSP 2 Score: 25.0238 bits (53), Expect = 1.253e-48
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 3
Query:  570 RGVGDLAKGRLFI 608
            RGVG+ A+GRLFI
Sbjct:  124 RGVGEAARGRLFI 136          
BLAST of CX294904 vs. ExPASy Swiss-Prot
Match: Y2835_ORYSJ (B3 domain-containing protein Os02g0683500 OS=Oryza sativa subsp. japonica GN=Os02g0683500 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.393e-45
Identity = 88/105 (83.81%), Postives = 95/105 (90.48%), Query Frame = 1
Query:  253 GEGEAEEDRVLISLEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSF 567
            G GEAE       +EKEHMFDKVVTPSDVGKLNRLVIPKQ+AEKYFPLD+++NEKGLLLNFEDR GKPWRFRYSYWNSSQSYVMTKGWSRFVK+K+LDAGD VSF
Sbjct:   83 GGGEAEV------VEKEHMFDKVVTPSDVGKLNRLVIPKQYAEKYFPLDAAANEKGLLLNFEDRAGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSF 181          
BLAST of CX294904 vs. ExPASy Swiss-Prot
Match: NGA1_ARATH (B3 domain-containing transcription factor NGA1 OS=Arabidopsis thaliana GN=NGA1 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.819e-45
Identity = 86/101 (85.15%), Postives = 92/101 (91.09%), Query Frame = 1
Query:  265 AEEDRVLISLEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSF 567
            AEE+      ++EHMFDKVVTPSDVGKLNRLVIPKQHAE++FPLDSSSNEKGLLLNFED  GK WRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGD+VSF
Sbjct:   20 AEEEGAREVADREHMFDKVVTPSDVGKLNRLVIPKQHAERFFPLDSSSNEKGLLLNFEDLTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSF 120          
BLAST of CX294904 vs. ExPASy Swiss-Prot
Match: Y4814_ORYSJ (B3 domain-containing protein Os04g0581400 OS=Oryza sativa subsp. japonica GN=Os04g0581400 PE=2 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 6.912e-45
Identity = 87/105 (82.86%), Postives = 94/105 (89.52%), Query Frame = 1
Query:  253 GEGEAEEDRVLISLEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSF 567
            G G  E+  V+   EKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDS++NEKGLLL+FEDR GK WRFRYSYWNSSQSYVMTKGWSRFVK+K+LDAGD VSF
Sbjct:   94 GGGGGEDVEVI---EKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSAANEKGLLLSFEDRTGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSF 195          
BLAST of CX294904 vs. ExPASy Swiss-Prot
Match: NGA3_ARATH (B3 domain-containing transcription factor NGA3 OS=Arabidopsis thaliana GN=NGA3 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.179e-44
Identity = 82/91 (90.11%), Postives = 88/91 (96.70%), Query Frame = 1
Query:  295 EKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSF 567
            EKEHMFDKVVTPSDVGKLNRLVIPKQHAE+YFPLDSS+N+ G LLNF+DRNGK WRFRYSYWNSSQSYVMTKGWSRFVK+KKLDAGD+VSF
Sbjct:   51 EKEHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDSSNNQNGTLLNFQDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSF 141          
BLAST of CX294904 vs. ExPASy Swiss-Prot
Match: NGA2_ARATH (B3 domain-containing transcription factor NGA2 OS=Arabidopsis thaliana GN=NGA2 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.793e-43
Identity = 82/96 (85.42%), Postives = 90/96 (93.75%), Query Frame = 1
Query:  289 SLEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSS---NEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSF 567
            S+E+EHMFDKVVTPSDVGKLNRLVIPKQHAE+YFPLD+S+   + KGLLLNFEDR+G  WRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGD+VSF
Sbjct:   16 SMEREHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDNSTTNDSNKGLLLNFEDRSGNSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSF 111          
BLAST of CX294904 vs. ExPASy Swiss-Prot
Match: Y1071_ORYSJ (Putative B3 domain-containing protein Os10g0537100 OS=Oryza sativa subsp. japonica GN=Os10g0537100 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.168e-39
Identity = 79/122 (64.75%), Postives = 93/122 (76.23%), Query Frame = 1
Query:  250 IGEGEAEEDRVLIS---LEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNE-------------KGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSF 567
            +  GE + +R   +   +EKEHMF+KVVTPSDVGKLNRLVIPKQHAE+YFPLD+++               KGL+L+FEDR GK WRFRYSYWNSSQSYVMTKGWSRFVK+K+L AGD VSF
Sbjct:   12 VAGGEEDSERGAAAWAVVEKEHMFEKVVTPSDVGKLNRLVIPKQHAERYFPLDAAAGAGGGGGGGGGGGGGKGLVLSFEDRTGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKRLGAGDTVSF 133          

HSP 2 Score: 25.409 bits (54), Expect = 1.168e-39
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 3
Query:  570 RGVGDLAKGRLFI 608
            RG+GD A+GRLFI
Sbjct:  135 RGLGDAARGRLFI 147          
BLAST of CX294904 vs. ExPASy Swiss-Prot
Match: NGA4_ARATH (B3 domain-containing transcription factor NGA4 OS=Arabidopsis thaliana GN=NGA4 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.823e-37
Identity = 75/112 (66.96%), Postives = 87/112 (77.68%), Query Frame = 1
Query:  232 QETKDIIGEGEAEEDRVLISLEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSF 567
            QE  +I        +    S  +EHMFDKV+TPSDVGKLNRLVIPKQHAE +FPL+   N+ G +L+F+D+NGK WRFRYSYWNSSQSYVMTKGWSRFVK+KKL AGD VSF
Sbjct:    5 QELAEIRASSSDHTNYFYSSERREHMFDKVLTPSDVGKLNRLVIPKQHAENFFPLED--NQNGTVLDFQDKNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLFAGDTVSF 114          
BLAST of CX294904 vs. ExPASy Swiss-Prot
Match: Y5625_ARATH (B3 domain-containing protein At5g06250 OS=Arabidopsis thaliana GN=At5g06250 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.305e-37
Identity = 74/100 (74.00%), Postives = 84/100 (84.00%), Query Frame = 1
Query:  298 KEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPL----------DSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSF 567
            KE +F+K +TPSDVGKLNRLVIPKQHAEKYFPL          D+SS+EKG+LL+FED +GK WRFRYSYWNSSQSYV+TKGWSRFVKDK+LD GDVV F
Sbjct:   42 KESLFEKSLTPSDVGKLNRLVIPKQHAEKYFPLNAVLVSSAAADTSSSEKGMLLSFEDESGKSWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVVFF 141          
BLAST of CX294904 vs. ExPASy Swiss-Prot
Match: Y1160_ORYSJ (B3 domain-containing protein Os11g0156000 OS=Oryza sativa subsp. japonica GN=Os11g0156000 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.543e-36
Identity = 70/92 (76.09%), Postives = 82/92 (89.13%), Query Frame = 1
Query:  295 EKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSS-SNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSF 567
            EKEHMF+K +TPSDVGKLNRLVIPKQHAE+YFPL +  + +KGL+L+FED  G PWRFRYSYW SSQSYV+TKGWSR+VK+K+LDAGDVV F
Sbjct:   33 EKEHMFEKPLTPSDVGKLNRLVIPKQHAERYFPLGAGDAADKGLILSFEDEAGAPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHF 124          
The following BLAST results are available for this feature:
BLAST of CX294904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
Y3209_ORYSJ1.253e-4878.45B3 domain-containing protein Os03g0120900 OS=Oryza... [more]
Y2835_ORYSJ1.393e-4583.81B3 domain-containing protein Os02g0683500 OS=Oryza... [more]
NGA1_ARATH1.819e-4585.15B3 domain-containing transcription factor NGA1 OS=... [more]
Y4814_ORYSJ6.912e-4582.86B3 domain-containing protein Os04g0581400 OS=Oryza... [more]
NGA3_ARATH1.179e-4490.11B3 domain-containing transcription factor NGA3 OS=... [more]
NGA2_ARATH3.793e-4385.42B3 domain-containing transcription factor NGA2 OS=... [more]
Y1071_ORYSJ1.168e-3964.75Putative B3 domain-containing protein Os10g0537100... [more]
NGA4_ARATH1.823e-3766.96B3 domain-containing transcription factor NGA4 OS=... [more]
Y5625_ARATH5.305e-3774.00B3 domain-containing protein At5g06250 OS=Arabidop... [more]
Y1160_ORYSJ1.543e-3676.09B3 domain-containing protein Os11g0156000 OS=Oryza... [more]

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Properties
Property NameValue
Genbank descriptionC05057C10SK PhIFruit1 Citrus clementina cDNA clone C05057C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294904 ID=CX294904; Name=CX294904; organism=Citrus clementina; type=EST; length=609bp
GGGCCATTCCCTTCAAGTCCAGGGCTTAAGAGAGTTCACTGATGACTATC
TGGTGGTACACAGCTGCTTCCTCTTACCACTCATCATCAAAATTACAACA
AACAACAACAACCACAAATGGGTTCTTGGCTATTAGGCAAAACAACCACA
ACAACGACAGCCGCCGAATTAGAAGATGTCTCAAACGAAGAAGAAGCTGC
AGCACCAACAGAAGAGCAGGCCATCATCATGCAGGAGACGAAGGATATTA
TTGGAGAAGGAGAAGCAGAAGAAGATCGTGTTCTTATTAGCTTGGAGAAG
GAACACATGTTTGACAAAGTTGTAACACCAAGCGATGTGGGTAAGCTGAA
TCGTTTAGTCATTCCAAAGCAACACGCAGAAAAGTACTTCCCATTAGACT
CTTCCTCGAACGAGAAAGGCCTTCTCTTGAATTTCGAGGATCGAAATGGA
AAGCCATGGAGGTTCCGCTACTCTTACTGGAACAGCAGCCAAAGCTACGT
CATGACCAAAGGCTGGAGCCGCTTTGTCAAGGACAAGAAACTTGATGCCG
GTGACGTTGTTTCCTTTATAGGGGTGTTGGTGATTTGGCTAAAGGTCGTC
TTTTCATTG
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