CX294912

Overview
NameCX294912
Unique NameCX294912
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length431
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9858 contig Ccv1_Contig9858:702..1132. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294912 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.848e-21
Identity = 42/74 (56.76%), Postives = 55/74 (74.32%), Query Frame = 1
Query:    4 PSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPYGPNLMAQSM 225
            PS++D  A R+PGYG+ TNIINGG+ECGKGWN+ V +RIGF+  +C   G+  G+NLDCYNQ P+G  +   SM
Sbjct:  251 PSSSDRAAGRVPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 324          
BLAST of CX294912 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.255e-20
Identity = 41/67 (61.19%), Postives = 52/67 (77.61%), Query Frame = 1
Query:    1 KPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPYG 201
            +PSA D  A RLPGYG+ TN++NGG+ECGKG N  VA+R+GFF  +CG  G+  G+NLDCYNQ P+G
Sbjct:  177 QPSAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDCYNQRPFG 243          
BLAST of CX294912 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 5.557e-20
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 1
Query:    4 PSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPYGPNLMAQSM 225
            PS++D  A R  GYG+ TNIINGG+ECGKGWN+ V +RIGF+  +C   G+  G+NLDCYNQ P+G  +   SM
Sbjct:  229 PSSSDRAAGRATGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 302          
BLAST of CX294912 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.758e-19
Identity = 41/75 (54.67%), Postives = 55/75 (73.33%), Query Frame = 1
Query:    1 KPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPYGPNLMAQSM 225
            +PSA D  A+RLPG+G+ TNIINGG+ECG+G +S V +RIGF+  +C   G+ PGDNLDC NQ  +G  L+  +M
Sbjct:  255 QPSAGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 329          
BLAST of CX294912 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.602e-19
Identity = 43/74 (58.11%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    4 PSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPYGPNLMAQSM 225
            PS+ D  A RLPGYG  TNIINGG+ECG+G +S V +RIGF+  +C  FGI  GDNLDCY+Q P+G +L   S+
Sbjct:  243 PSSADRAAGRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGIGYGDNLDCYSQRPFGSSLPLSSI 316          
BLAST of CX294912 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.704e-19
Identity = 42/77 (54.55%), Postives = 56/77 (72.73%), Query Frame = 1
Query:    4 PSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPYGPNLMAQSM*SS 234
            PS+ DV A RLPGYG  TNIINGG+ECG+G +S V +RIGFF  +C   G+  G+NLDCY+Q P+G +L+   + +S
Sbjct:  251 PSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLLLSDLVTS 327          
BLAST of CX294912 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 4.704e-19
Identity = 41/68 (60.29%), Postives = 50/68 (73.53%), Query Frame = 1
Query:    4 PSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPYGPN 207
            PSA+D  A R+PGYG  TNIINGG+ECG G +  VA+RIGF+  +C   G+  GDNLDCYNQ PY P+
Sbjct:  253 PSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDCYNQRPYPPS 320          
BLAST of CX294912 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 8.024e-19
Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = 1
Query:    4 PSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPYGPNLMAQSM*SS 234
            PS+ DV A RLPGYG  TNIINGG+ECG+G +S V +RIGFF  +C   G+  G+NLDCY+Q P+G +L    + +S
Sbjct:  250 PSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLFLSDLVTS 326          
BLAST of CX294912 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.048e-18
Identity = 40/75 (53.33%), Postives = 55/75 (73.33%), Query Frame = 1
Query:    1 KPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPYGPNLMAQSM 225
            +PS+ D  A+RLPG+G+ TNIINGG+ECG+G +S V +RIGF+  +C   G+ PGDNLDC NQ  +G  L+  +M
Sbjct:  250 QPSSADRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 324          
BLAST of CX294912 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.048e-18
Identity = 40/74 (54.05%), Postives = 51/74 (68.92%), Query Frame = 1
Query:    4 PSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPYGPNLMAQSM 225
            PS +D  A R+PG+GL TNIINGG+ECG+GWN+ V +RIGF+  +C   G+  G+NLDCYNQ  Y       SM
Sbjct:  248 PSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTLGVGYGNNLDCYNQRSYNNGPSVDSM 321          
The following BLAST results are available for this feature:
BLAST of CX294912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
CHI1_GOSHI3.848e-2156.76Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHIT_CARPA4.255e-2061.19Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI2_GOSHI5.557e-2055.41Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_TOBAC2.758e-1954.67Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI2_PEA3.602e-1958.11Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHIT_PHAVU4.704e-1954.55Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI3_ORYSJ4.704e-1960.29Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI5_PHAVU8.024e-1954.55Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI2_TOBAC1.048e-1853.33Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI1_THECC1.048e-1854.05Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionC05057D09SK PhIFruit1 Citrus clementina cDNA clone C05057D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294912 ID=CX294912; Name=CX294912; organism=Citrus clementina; type=EST; length=431bp
AAACCATCAGCAAATGACGTAAACGCCAGCCGGCTTCCGGGATACGGTCT
AACCACAAATATAATCAACGGTGGAATTGAATGTGGCAAAGGTTGGAATA
GCTTTGTAGCTAACCGTATTGGGTTCTTTACCACTTTCTGTGGCAAGTTT
GGGATTCAGCCTGGCGACAATCTTGATTGCTACAACCAAGGGCCTTATGG
CCCTAATTTGATGGCACAATCTATGTGATCATCATGATCAACGTTTTAGT
AAAATAAGCTTAATAAAAGCTACTTAATAAAAACTTTAGATGTCACACTT
GTAGGTGGACAACTAAATTGTTAGTTTGTTACGCTCTTATTGTAGGTAAA
TTAAATAAGACTGATCCAACATGGATCAATGAGTCTTCTCCNNNNNAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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