CX294916

Overview
NameCX294916
Unique NameCX294916
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length629
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294916 vs. ExPASy Swiss-Prot
Match: AL121_ARATH (Delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial OS=Arabidopsis thaliana GN=ALDH12A1 PE=2 SV=1)

HSP 1 Score: 360.147 bits (923), Expect = 5.117e-99
Identity = 173/200 (86.50%), Postives = 191/200 (95.50%), Query Frame = 3
Query:    3 KCSAQSVLFMHENWSSTSLLSKMKDLADRRKLEDLTVGPVLTFTTEAMLEHMNKLLKVPGSKLLFGGEELKNHSIPSIYGALKPTAVFVPLEEILKDGN-YELVTREIFGPFQIVTEYKQDQLPLVLNALERMHAHLTAAVVSNDPLFLQEVIGNTVNGTTYAGLRARTTGAPQNHWFGPSGDPRGAGIGTPEAIKLVWS 599
            KCSAQS+LF+HENWS T L+SK+K+LA+RRKLEDLT+GPVLTFTTEAMLEHM  LL++PGSKLLFGG+ELKNHSIPSIYGAL+PTAV+VP+EEILKD   YELVT+EIFGPFQIVTEYK+DQLPLVL ALERMHAHLTAAVVSNDP+FLQEVIGN+VNGTTYAGLR RTTGAPQNHWFGP+GDPRGAGIGTPEAIKLVWS
Sbjct:  335 KCSAQSMLFVHENWSKTPLVSKLKELAERRKLEDLTIGPVLTFTTEAMLEHMENLLQIPGSKLLFGGKELKNHSIPSIYGALEPTAVYVPIEEILKDNKTYELVTKEIFGPFQIVTEYKKDQLPLVLEALERMHAHLTAAVVSNDPIFLQEVIGNSVNGTTYAGLRGRTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWS 534          
BLAST of CX294916 vs. ExPASy Swiss-Prot
Match: ALDH_LINUS (Probable aldehyde dehydrogenase OS=Linum usitatissimum GN=FIS1 PE=2 SV=1)

HSP 1 Score: 355.91 bits (912), Expect = 9.651e-98
Identity = 168/199 (84.42%), Postives = 190/199 (95.48%), Query Frame = 3
Query:    3 KCSAQSVLFMHENWSSTSLLSKMKDLADRRKLEDLTVGPVLTFTTEAMLEHMNKLLKVPGSKLLFGGEELKNHSIPSIYGALKPTAVFVPLEEILKDGNYELVTREIFGPFQIVTEYKQDQLPLVLNALERMHAHLTAAVVSNDPLFLQEVIGNTVNGTTYAGLRARTTGAPQNHWFGPSGDPRGAGIGTPEAIKLVWS 599
            KCSAQS+LFMHENW++T L+S++K+LA+RRKLEDLTVGPVLT TTEAML+H+NKLL++PG+KLLFGG+ L+NH+IPSIYGA+KPTAV+VPLEEILK  NYELVT+EIFGPFQ+VTEYK  QLP+VL ALERMHAHLTAAVVSND LFLQEVIGNTVNGTTYAGLRARTTGAPQNHWFGP+GDPRGAGIGTPEAIKLVWS
Sbjct:  331 KCSAQSILFMHENWAATPLISRLKELAERRKLEDLTVGPVLTVTTEAMLDHLNKLLQIPGAKLLFGGKPLENHTIPSIYGAVKPTAVYVPLEEILKVSNYELVTKEIFGPFQVVTEYKNSQLPMVLEALERMHAHLTAAVVSNDQLFLQEVIGNTVNGTTYAGLRARTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWS 529          
The following BLAST results are available for this feature:
BLAST of CX294916 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
AL121_ARATH5.117e-9986.50Delta-1-pyrroline-5-carboxylate dehydrogenase 12A1... [more]
ALDH_LINUS9.651e-9884.42Probable aldehyde dehydrogenase OS=Linum usitatiss... [more]
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Properties
Property NameValue
Genbank descriptionC05057E03SK PhIFruit1 Citrus clementina cDNA clone C05057E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294916 ID=CX294916; Name=CX294916; organism=Citrus clementina; type=EST; length=629bp
AAAAATGTTCTGCACAATCAGTACTATTCATGCATGAGAATTGGTCTTCA
ACTTCACTTTTATCCAAAATGAAAGATCTTGCCGATAGAAGAAAGCTGGA
AGATTTAACCGTCGGCCCTGTTCTTACTTTCACAACTGAAGCAATGCTTG
AGCACATGAATAAATTGCTTAAGGTACCAGGTTCAAAGTTACTCTTTGGT
GGTGAAGAGTTGAAGAACCATTCCATCCCATCCATATATGGTGCTCTAAA
ACCAACAGCCGTCTTTGTGCCACTTGAAGAAATTCTGAAAGATGGAAATT
ATGAACTTGTAACAAGAGAAATCTTTGGACCTTTTCAGATTGTCACCGAG
TATAAGCAAGATCAACTTCCTCTAGTGTTGAATGCTTTGGAGAGGATGCA
TGCACATTTAACAGCTGCAGTGGTTTCAAATGATCCACTCTTTTTACAGG
AAGTGATTGGGAATACAGTGAATGGCACTACATATGCTGGATTAAGAGCA
AGAACAACTGGAGCTCCACAGAATCACTGGTTCGGACCATCTGGAGATCC
GAGGGGTGCAGGAATTGGAACCCCGGAAGCAATAAAACTTGTTTGGTCTT
CCATAGAGAAACATATACGATTATGGTCC
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