CX294917

Overview
NameCX294917
Unique NameCX294917
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig595 contig Ccv1_Contig595:1..638. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACT7_ARATH (Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 2.147e-92
Identity = 164/166 (98.80%), Postives = 164/166 (98.80%), Query Frame = 1
Query:  139 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP
Sbjct:    1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 166          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACT1_SORBI (Actin-1 OS=Sorghum bicolor GN=AC1 PE=2 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 2.147e-92
Identity = 164/166 (98.80%), Postives = 164/166 (98.80%), Query Frame = 1
Query:  139 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT IMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP
Sbjct:    1 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 166          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACT1_ORYSJ (Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE=2 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 2.147e-92
Identity = 164/166 (98.80%), Postives = 164/166 (98.80%), Query Frame = 1
Query:  139 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT IMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP
Sbjct:    1 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 166          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACT1_ORYSI (Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 2.147e-92
Identity = 164/166 (98.80%), Postives = 164/166 (98.80%), Query Frame = 1
Query:  139 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT IMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP
Sbjct:    1 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 166          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACT2_ORYSJ (Actin-2 OS=Oryza sativa subsp. japonica GN=ACT2 PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 3.662e-92
Identity = 163/166 (98.19%), Postives = 165/166 (99.40%), Query Frame = 1
Query:  139 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREKMT IMFETF+VPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP
Sbjct:    1 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFSVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 166          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACT2_ORYSI (Actin-2 OS=Oryza sativa subsp. indica GN=ACT2 PE=3 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 3.662e-92
Identity = 163/166 (98.19%), Postives = 165/166 (99.40%), Query Frame = 1
Query:  139 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREKMT IMFETF+VPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP
Sbjct:    1 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFSVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 166          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACT3_PEA (Actin-3 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 6.246e-92
Identity = 163/166 (98.19%), Postives = 164/166 (98.80%), Query Frame = 1
Query:  139 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            MA+AEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT IMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP
Sbjct:    1 MAEAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 166          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACT1_TOBAC (Actin OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 6.246e-92
Identity = 163/166 (98.19%), Postives = 163/166 (98.19%), Query Frame = 1
Query:  139 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT IMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP
Sbjct:    1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 166          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACT11_ARATH (Actin-11 OS=Arabidopsis thaliana GN=ACT11 PE=1 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 6.246e-92
Identity = 163/166 (98.19%), Postives = 163/166 (98.19%), Query Frame = 1
Query:  139 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            MAD EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT IMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP
Sbjct:    1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 166          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACT13_SOLTU (Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 8.158e-92
Identity = 162/166 (97.59%), Postives = 165/166 (99.40%), Query Frame = 1
Query:  139 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            MADAEDI+PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRV+P+EHPVLLTEAPLNPKANREKMT IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP
Sbjct:    1 MADAEDIEPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVSPDEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 166          
The following BLAST results are available for this feature:
BLAST of CX294917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 456
Match NameE-valueIdentityDescription
ACT7_ARATH2.147e-9298.80Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1[more]
ACT1_SORBI2.147e-9298.80Actin-1 OS=Sorghum bicolor GN=AC1 PE=2 SV=1[more]
ACT1_ORYSJ2.147e-9298.80Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE... [more]
ACT1_ORYSI2.147e-9298.80Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2... [more]
ACT2_ORYSJ3.662e-9298.19Actin-2 OS=Oryza sativa subsp. japonica GN=ACT2 PE... [more]
ACT2_ORYSI3.662e-9298.19Actin-2 OS=Oryza sativa subsp. indica GN=ACT2 PE=3... [more]
ACT3_PEA6.246e-9298.19Actin-3 OS=Pisum sativum PE=2 SV=1[more]
ACT1_TOBAC6.246e-9298.19Actin OS=Nicotiana tabacum PE=3 SV=1[more]
ACT11_ARATH6.246e-9298.19Actin-11 OS=Arabidopsis thaliana GN=ACT11 PE=1 SV=... [more]
ACT13_SOLTU8.158e-9297.59Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05057E04SK PhIFruit1 Citrus clementina cDNA clone C05057E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294917 ID=CX294917; Name=CX294917; organism=Citrus clementina; type=EST; length=638bp
CTCGTGCCGAATTCGGCACGAGGTTTTTAATCTCTCGGCAGTACCAAATA
CAGAGCGATAGAGAGAATCGACACTCTCAGCTAGACTCCATCTTCGAATT
TTTCTCTCGTCGTCTCTTCAATCTAACTTTTATAAAAAATGGCCGATGCT
GAGGATATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTGAAGGC
TGGATTTGCTGGAGATGATGCTCCAAGGGCAGTATTCCCTAGTATTGTTG
GTAGGCCTCGACACACTGGAGTCATGGTTGGAATGGGGCAGAAGGATGCC
TATGTTGGTGATGAGGCCCAATCGAAAAGAGGTATTCTTACTTTGAAATA
CCCAATTGAGCACGGTATTGTAAGCAACTGGGATGATATGGAAAAGATCT
GGCATCATACCTTCTACAACGAGCTTCGTGTTGCTCCTGAAGAGCACCCA
GTGCTTCTCACTGAGGCACCTCTTAACCCCAAGGCCAACAGAGAGAAGAT
GACCCANATTATGTTTGAAACTTTCAATGTGCCAGCCATGTACGTTGCCA
TCCAGGCTGTTCTATCTCTTTATGCCAGTGGTCGTACAACTGGTATTGTG
CTGGATTCTGGTGATGGTGTGTCTCATACTGTACCATT
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